AMCG00008048 (LOC107747493)


Basic Information

Item Value
gene id AMCG00008048
gene name LOC107747493
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40632644 ~ 40647166 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008048
GGAGAACAATGGGATGTGTGAAATCGAAGGAGGACCAGTCGCTCAGCAATGACAAGGTCTTGAATTCTGACCCAGTACGTAAACTCCAACAAGCTCATTACGTGAAAGATCCCACATCGGGTAGACAAGATAATGTGGTCATTGCACTGTATGATTATGAGGGAATGCATGATGGCGACCTGGGCTTCAAGAAGGGTGACAAACTCCGGATTTTGCAGGAgtCTGGCGAATGGTGGAGTGCCAAATCCATCAGTACAGGACAGGAGGGGTTCATTCCTAGCAATTATGTTGCTAAAACAGACACACTGGAGACAGAGGACTGGTTCTTTAAGGGAGTCAGCCGTAAGGATGCTGAGAGGACGCTCCTCGCAAGTGGGAACCGCTTAGGGTCTTTCATGATCCGGGACAGTAGCTATTCTCTGTCAGTGAGAGACAGCGACCCACAGGCTGGTGACACTGTGAAGCATTACAAGATCCGGACACTGGATAATGGCGGGTTTTACATCTCCCCAAGAATCACTTTCAGCAGCTTACAGGAGCTCGTCATCCACTACAAGAGCAGCTTGCTGGACTTCCTGAAGAGCGACGAGGGAAACCGTGTGCAGCTCCCCAAGCTCATTGACTTCTCAGCACAGGACATTAACCTGAACCAGGGTTGTCTGATTGACATC

Function

NR:

description
PREDICTED: tyrosine-protein kinase HCK-like isoform X3

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008048 True 671 mRNA 0.50 7 40632644 40647166

Neighbor

gene id symbol gene type direction distance location
AMCG00008045 NA coding upstream 8373 40608612 ~ 40624271 (+)
AMCG00008047 LOC104946955 coding upstream 54214 40569832 ~ 40578430 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding upstream 365492 40252212 ~ 40267152 (+)
AMCG00008038 LOC105906738 coding upstream 394934 40215915 ~ 40237710 (+)
AMCG00008037 nsfl1c,LOC106566439 coding upstream 418661 40208137 ~ 40213983 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding downstream 1977 40649143 ~ 40661046 (+)
AMCG00008049 LOC107707748,LOC107747492 coding downstream 50858 40698024 ~ 40709849 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding downstream 77191 40724357 ~ 40745265 (+)
AMCG00008057 NA coding downstream 249450 40896616 ~ 40922814 (+)
AMCG00008061 NA coding downstream 282946 40930112 ~ 40948904 (+)
G28032 NA non-coding upstream 354957 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 572439 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 628944 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 1027816 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1341423 39290968 ~ 39291221 (+)
G28140 NA non-coding downstream 104309 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 111532 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 114100 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 330488 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 369201 41016367 ~ 41017248 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 385406 40241312 ~ 40247238 (+)
G27974 NA other upstream 573258 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 797692 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 1040233 39510411 ~ 39592411 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other downstream 16806 40663972 ~ 40721745 (+)
G28395 NA other downstream 1345693 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1766466 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2458547 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2497639 43144805 ~ 43156072 (+)

Expression


Co-expression Network