AMCG00008049 (LOC107707748,LOC107747492)


Basic Information

Item Value
gene id AMCG00008049
gene name LOC107707748,LOC107747492
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40698024 ~ 40709849 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008049
ATTAATAGATAAACGACCAGTTTCACAGAGGTTTGGTCTAATGTGCTTCAAACCAGACAAACTCTTAACATGAACAGAACTGTTAACTCATATGACAGCTACTTCTAGCATGAAATCTAACATTTGAGTTACCAAACTCAGTTCACGGGCATCTTTCTACACATTCCTCTTTACATGTGCATCACATGGAGTTGAGTAGAATGTAGAGCATCCAGAGAGTGAATTAAAATTCTCCTCATTTACTGGGGGACTTGTACAAACGTGATGTTTTCTCTGCCTTGAGAGGAAATCTCAAGATCATGTTACACAGATATGCTTCCCCACTTATACATTGGCATTGGTCATTTGTAGttcttttaaaggaaatgtattttgatattaAAAGGATTTAACATTACCTGGAAACTATAATTAGTCGTGTAAGAATCTAATTAACCCCCTTAATCCTCGTTTTGAAGgtaaaatacaaagcacaaaaGCTTTGCTGTGGTGCGTGTATTAtgcttttacacacacacacacaaaaagtatgttattaaatatttggtCATGTCTGATCCCCTTTTCCTCCTCAAAACATGGTCTCCATCTCTGTTGTCTGTCCCTTTTGTGTGTTTACGCAATGCCATGTTAACATGCTAGCACACGGTTGTGCTTCTGTAGTTTTCAAATAAGGAACCCCTCCCTCTTCTGAATGAACAACAGCTTCATCTCTTTAAAGCCTTCCCTCTATATTCCAGtccattttgtttcatgtaaCCAACAGTATTTATCCTTGGTAGCTGGGTTGCATTCCAGTGGCAGAGAAGACTAGACAGTGGCAGTAATTACAAAAGGAACAcactataaaaatgtaaagttcagCTACCAAAGCTGCAATTTAGAGCTGAAAAGTACACACATAAATTAGGATAAATATACTCAGAACAATAATTACACCATTAAAGCTGGATATGTGCTggtattttttagattttagtttagtttcctGGCACGTCTCCCTGTGCAAACACATTTGCAtgtagttttcagtttttctggtGCTTAAAACaacctttttaatgttttttttgtccatttatttGATTGTGCCCTGAAATATAAACTTCTCTTCATATGCCTCTTCTAAAGCGAACTGAAGTAACATTTTGCTAAATTACACCAAAACACAATGATACACACACcaactcaaaaaaaaaaaaaaaacaaacagttggaGTGTGAGACAAAATTGACACCATTGTGACTGTTGTTCACTTTGAATGCCACAGACCCATGTGGTCAACTGAAGCCTCATTCCCAACAGAAAAACCACTTCCAGGCATTACCCTTTCTAGTCACAGAATTGTCCTAAAAATGACAGAGGTTTGAAACCGTTATTTCATTTGTGCAGACCATTATTTTTAGATCGGTCACAACGTCACTTCGAAACAGCCGCAGAAAACTGGATTATGTGTCTGATCTGCTTATTATCTTAACTGACCTGTTGTTATGccaaaacagaaactgaaaagctGGGATAGTACACTGTTTTCAAGCTGACTGGACAACAGGTTGTGgatcagatgtgtgtgtgtgagagagagagatctgaaaataaaagacCAAATGTCACATCTAGAGCACACACAATTATGCACTTTTCTTCAACTCTTCCCATGTTCATGACAGATAACATCTTTGAAAGGTGTCCTATTTCTCCTTTTATACACCACCGATGGGTGGGGGTTCTCTCAGTCCTGCAGAGGCGGGGAGGGGGGTGGTATCAGATCTCTTGGCAGTATGGTGAGCCTGCAGTCAGCTGATAACACCTTGGGTGGATCTCATGTTGCCATAGAGACCAGAGAGGGTGTTGAATGCTTACACTCTGCAACAAACATTGTGAAGAGCCTTTCCTCTTCAATAAAGACAAGACGCTTCCAATGAGTAGCCTTGAGCATCTCACCAGCAGTTTCTTTTGCCTACTAGATCTACTGCAAGCCTGTATTATTCTGCCACTGGCTGGTTAATGCTCAATCTGATCTGGAGATCCAACAGAAGGTTGATCATGCACTTCCAACGTTGGCTTCCTCCTTTGTTCTGTTGAAAATGGGGAGTATGCTGTCCCTAGTAAAAGCAGCGTCCGGCATTTAACGCGTTAACTACGAACTCGCGCAAAGCATTGTGGGCCGGCGGAAGATTCGCAATGGCCGCTGAAACCATGAGCCTGAAATTTTCAGCTAACATTTGGCTTTCTTTTACAGCTTTCTCGCTCTTACTTTGTCTTTCTAGTGCGGCCGATTTAGTATGGGATGAAAATGGATACATACTGTATTGCCCTTGTATGGGGAGGTTTGGTAATCAGGCAGATCATTTTTTGGGCTCCCTGGCCTTTGCAAAGATGCTGAATCGTACACTAGCTGTTCCACCTTGGATTATATACAGGCATCATGCGCCCCCTTTCACTAATTTGCATGTTCCTTACAGGGATTTCTTCAGGATGGAGCCCCTGCTGCAGTTCCACAGAGTGGTCAGCCTGGAGGAATTCATGGTGCAGCTGGCACCCTCACGCTGGCCCCCGGGCACACGGGTGGCGTACTGCTTCGACGCTGCGGCACAGAGGAGCCCTGACAAGAGGAGCTGTCCTATGAAGGATGGAAATCCTTTCGGTCCTTTTTGGGACCAGTTCAGTGTGGATTTCGATAGGTCTGTCCTCTTTTCAGGCCTTTCCTTTAACACCTACTACAAGCAGCACTGGATCAAAAAATTCCCTCCTTCTGAACACCCAGTGCTGACACTGCCGGGGGCCCCTGCTCAGTTCCCCGTACTGGAGGAGCATGTGGGTCTGCAGCGCTATGTGGTTTGGGCAGACAACATGGTCCAGCAGGGAGAGGGCCACATCAAAGCTCTGTTAGTGCGGCCTTATGTGGGCATACACCTGAGGATCGGCTCCGACTGGCAAAACGCCTGCAAGCTGTTAAAGAACGGGGAGACGGGGCCACACTTCATGGCCTCTCCGCAGTGTGTGGGGTATAACCGCCAAACCGCTCTGCCCCTCACCATGGACATGTGTCTGCCAGACCTGAGGGAGATCAAACGGGCTCTGAAAGTCTGGGTGAAGATGATCAATGCCAAGTCTGTCTACATTGCCACCGACTCGGAGTCTCACAGCAGAGAGATCGAGAAGCTGTTCAAGGGGAATGTCAAGGTGGTGACTCTGCACCCCGAGGTTGCTCAGGTGGATCTGTACATCCTAGGCCAGGCGGATCACTTCATTGGGAACTGTGCGTCCTCTTTCTCTGCGTTCGTGAAGCGAGAGCGAGACATTTATGGACGGCCCTCCTCATTTTTCGGGATGGACTATCCTGGAAAGAGGAAGGATGAACTTTAAGGACTGTCGATAGCTGGAAGACACTGGATGCTGACCCACGGTACACACTGCTGGATGGACAGCCCAAGACCGCAGTGAGTTAGAGCTGTCAGACTGAAGACGCAGGACAGTGCGTGCTGGTTAAATCCTCTCTGTCTCGCCACGTGACACGCCAcaccttttatttaaattgtgcaaCCACAGCTTGGTCATTTGTGACATTTCTGTGCGGCATATTAGCTACACACACTTTGTTTCGCTCTTTGTAACCTGCATATCAAATAGCCCTCTGGAAAACCCACACTGAATACGTTGGGAAGAGAAGTCACTGAGTGCTGGAAGCTTTCTGAGAGGTGTAAACTGAAAGCCTAACTGATCTGTTAGCTTCTAATAATAGTGGTACTGGTCATAATTACCTCACTTCCTACATTCCCTGCATCGCTGTCTTATGGTATTTACAGGAGAGTTAACTGGCTGTTGTCTGGAAACAATGTAAAGcatgaattatattattttaaaataaaaaatgaatgaaaatgttttatacaagCTAAGAAGAGTAGTTTACAGATCCTCTCAATATCAATACtgctaaaatatgtatatatgaagatagggggaacaaaaaaaatctagtaATTTATAAACTCCAGATTGGGAAGACTAAAGTACCTCAATTGCAGCAGATAACCAATCCCAGATCGGTTGTGCAGAATGTGTTCAAGAGAATTCAGAGAAGGGTTTTGGGGAAGTGTCGGGAGTTTATCAATCAAGGGTAATTCATGATGTTAACCAGGACAGGAAGGTGTGTGCTATTACACAAATCAAACACATCAGCGTTCTTGCACTACGGTTTTGAGAGGGATGCGGGACAGGGTCACCCAAGAGCACCACCTGGTCTCTGACCTGCAGTACCCCAAACTTCCAGCAATATATAAGTATTAATCTAGGACCGTGTACATCTAGTATGACTAGAGACtatgaatttatattttgtttttacatgcaaACTTTTGATTGTGTTCAGTCCTACAGATGTTGAGGTAAAAGGACGGTATTTATGGCTTACTCTGCGAACCCCATTAGATTCACAGAGGGGTGCTATTTGTACTACATGAttctggttaaaaaaataaaaatataccacAATTTGTAAAATTCTTGAGCCAATTGAAAGGACTTGTATATTCatattgttgaaatgtttttctattaaaaatacCATGTCATTTT

Function

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like

GO:

id name namespace
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008049 True 4582 mRNA 0.43 9 40698024 40709849

Neighbor

gene id symbol gene type direction distance location
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding upstream 36978 40649143 ~ 40661046 (+)
AMCG00008048 LOC107747493 coding upstream 50858 40632644 ~ 40647166 (+)
AMCG00008045 NA coding upstream 73753 40608612 ~ 40624271 (+)
AMCG00008047 LOC104946955 coding upstream 119594 40569832 ~ 40578430 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding upstream 430872 40252212 ~ 40267152 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding downstream 14508 40724357 ~ 40745265 (+)
AMCG00008057 NA coding downstream 186767 40896616 ~ 40922814 (+)
AMCG00008061 NA coding downstream 220263 40930112 ~ 40948904 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding downstream 240363 40950212 ~ 40959551 (+)
AMCG00008059 NA coding downstream 253300 40963149 ~ 40975884 (+)
G28032 NA non-coding upstream 420337 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 637819 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 694324 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 1093196 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1406803 39290968 ~ 39291221 (+)
G28140 NA non-coding downstream 41626 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 48849 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 51417 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 267805 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 306518 41016367 ~ 41017248 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 450786 40241312 ~ 40247238 (+)
G27974 NA other upstream 638638 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 863072 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 1105613 39510411 ~ 39592411 (+)
G28395 NA other downstream 1283010 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1703783 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2395864 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2434956 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2582747 43292596 ~ 43305530 (+)

Expression


Co-expression Network