AMCG00008051 (kif3b,LOC106572821,LOC106566426)


Basic Information

Item Value
gene id AMCG00008051
gene name kif3b,LOC106572821,LOC106566426
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40663972 ~ 40721745 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008051
TCCCCGGGTCCATGTTGTGCCGTTGCTAGGCCGCTTATCTATAGTCTCTCTTGAACAGCGGGGGGAAGCCGAACCGATTCAGTATGGATTAGTCCAGTTTCACAAATCCTGATGCTGTTACTAGGGATGATTTCATTTGAACTACAAGgcTTTGATACTGGAAGACTCCCGCTGTGAAGGCAAGCCATACACATTTCCACCATGTCTAAAATGAAGAGCTCGGAGTCTGTGAAGGTGGTCGTCAGATGCAGGCCGATGAATGACAAGGAGGTTGCTGCCAACTTCGAAAGAGTGGTCTCTGTGGATGTGAAGCTGGGGCAGGTTTCTGTGAAGAATTCCCGGGGAGCGTCCAATGAGCATCCCAAGATGTTTACATTCGATTCAGTTTACGACTGGAATTCCAAGCAGGTGGAACTGTATGATGAGACTTTCAGACCCTTGGTAGATTCTGTCCTTCTGGGCTTCAATGGCACCATCTTTGCATATGGTCAGACAGGAACTGGCAAAACCTACACTATGGAAGGGGTGCGTAATGACCCAGAGAGAAGAGGTGTCATCCCTAATTCTTTTGaacacatatttacacacatatcTAGGTCCCAGAACCAGCAGTACCTTGTCAGGGCCTCATATCTAGAAATCTATCAAGAGGAGATCAGAGACTTGTTATCGAAAGACCAATCCAGGAGACTGGAGCTGAAAGAACGTCCAGACACAGGGGTTTACGTCAAAGACTTGTCTTCCTTTGTTACAAAAAGTGTGAAGGAGATTGAGCACGTCATGAATGTTGGAAACCAGAACCGGTCTGTGGGCGCCACCAACATGAATGAGCACAGCTCTAGGTCACACGCCATCTTTGTCATAACCGTCGAGTGCAGCGAGCTTGGCCTGGATGGGGAGAACCACATCCGGGTGGGCAAGCTCAACCTGGTGGACCTGGCTGGCAGTGAACGTCAGAACAAAACGGGAGCGCAGGGTGAGAGGTTGAAAGAGGCCACCAAGATCAACCTGTCCCTGTCCGCCTTGGGAAATGTCATCTCTGCCTTGGTCGATGGCAAGAGCACCCACATCCCCTATCGTGACTCAAAACTCACCCGCTTGCTGCAGGACTCCCTGGGTGGCAATGCCAAGACAGTCATGGTGGCCAACATTGGCCCAGCCTCCTACAACGTGGAAGAGACTCTCACGACCCTGCGCTACTCCAATCGGGCCAAGAACATCAAAAACAAGCCACGGGTGAACGAAGACCCGAAGGACGCCCTGTTACGGGAGTTCCAGGAGGAGATTGCGCGCTTGAAGGCCCAGCTGGAGAAAAGGtcagggaagaagaagaagaagcgaCGAAGGAGGCACCcgggagaggggggagaggagCTGGGCGAGgacgaggaggatgaggatgacGACGGGGATGAAGAAGCGGAGGAAGACAAGGATGCACCGGATTACTGGCGGAAGCAACAGGACaagctggagaaggagaaaaaagccATTCTGGAAGACCACAGCTTGGTGGCTGACGAGAAACAGAAGCTACtcagggagaaggagagaaagatggaggacatgaagaaagagaaggaggcCAGTGAGATGCTGGCGGCCAAAGTGAAGGCCATGGAGAGTAAACTCCTTGTTGGAGGCAAAAATATTGTTGAccatacaaatgaacaacagaAAATACTGGAGCAGAAACGTCATGAAATTGCTGAACAGAAACGGAGAGAGCGTGAGATGCAACAGCAGATGGAGTGCCGTGACGAAGAGACACTGGAGCTGAAGGAAACCTACAGCTCCCTACAACAGGAAGTCGacatcaaaacaaagaaactgaaaaagCTGTTTGCAAAGTTGCAAGCAGTCAAAGCCGAGATCCACGATCTGCAGGAAGATCACATTAAAGAGAGACAAGAACTGGAGCAGACTCAGAACGAGCTGACTAGAGAACTGAAGCTCAAacACCTTATCATCGAGAACTTCATCCCATTGGAAGAAAAGAATAAAATTATGAACAGGTCCTTTCTCGACGATGAAGACGATCACTGGAAACTGCATCCGATAACTCGGATTGAGGACAATCAGCAGATGATGACCAGGCCTATCTCTGCTGTGGGGTACAAGAGGCCCTTGAGCCAGCATGCCCGAATGGCCATGATGATGAGACCTGAAGCTAGATACAGGGCTGAGAACATCCTCTTACTGGAGCTGGATTTGCCCAGTCGTACCACCAGAGAGTACGAGGAGCCGGCCATTGCCCCGAAAGTAGCAGCAGCGCTGGAAGCTGCTCTGCAGGATGAAGACGAGATTCAGGTGGACGCCTCGACCTTTGAAAGCATCGGCAACAAAAAATCTAAGTCCAGGCCTAAAACAGGAAAGAAGTCTAGCACGCCCACATCTGCATCTAGTCCTGGGAGTTCAGCGAGTCCCCTTTACCCACAGTCACGTGGCCTTGTCCCCAAATGAtcctgacactttttttttttttttaaacatggccCTGTATTAAACTGAACAGGGTCCAAACAGAAACACTGGTATGAGATTTTTTTATGCTTTGTAACTGAAATCTACTATTGCATTTACCTTCTGCATCTTCCCTTTCAATTACTATGACAATTACTaccactttttttgtttggatttgtATTGTTAACCTGTACGATCCCAGGAAGAAAACTGACTCTTGATTTATACTATAATACAATGCAAACTCAAGTCGAACACGACTGGCCTTTAAGTCAGTGATTTGCATTTCAATGAAATGCAACATGAATCCGGGAAAAAGAAAGATctgatctttttttaatgttgttaaaatatgtagTGTAGTCCCCAGAACGTCATGTTCCTGCAATGGCTCCGGTCTTCTTTGAGACAGGACACCTGTGAAAAGCATGAGGCAGTATTCAGAAGAGAAGTTAATCAAATGTTATGCCACTGTCAGCTGGGCTAGACAGTATGTTTCAGTCACATTCTTCAGCCTCTTTTACCTTCAGATACAATTATATTAGTTCAGCAgtccaaaacaaatgtatcagtTCTTAAACCCACGATATATGAATTACTGATAATGCTCGTACTTCCATTAACATTACTTTACTTAAATAACGCTAAAGATGCGACCAGAGTATCCTatattttcctatttttgtattacatcaCATACACTAAATGAAGAAGAGGTGTATTTTGTTAAGTTTGGGATCCAGCTACATGCATGGTACTGTCATTCTGAGCTGTGACGAGCTGAACAACTGTGTTACCTAGAGACGATTTAAGAGAGACAAATATGCACACCAAATATACAAAGACTTCATGGTGCCTTACAGAAAGCTAACCCTTTAGCTCATTTGCATAGCTTGGAAACAACATTGGGTATTGCAGTCTTTAAGGGAAGTAAACATTGGTACATAGGCACCAGACCTTATTTCCACTCAGAATTAACAGTGCCGTTGCCCAGACTAAGCATTCTCTCGTGGTGAATCCAGAATTCTACTTCCGGATCTTTTGAATACTGCCCCTTTCAACCCTGTTTAGTGCCACTGCTTGCTGCTATTATAGGATAGGATACACCTATATAAAATACGTacactatatgtatatacaggAATGGATACTTTGCATAAACTGTGGACAACAAAATGTCTAGAACTAAActttgcaaaataatacattctaatttatattgtttttttgttttgtttatgaagaCAAATGTAGATAcgctttttgttaatttttttttaaatctttattttctgaacaaatatttttatttggggtTGTATCATTTAAAGTTatgtatagatttatttttgtgtatcatttgggtttctgaaatgtgatttttgtttttgtttttcggtTGGTTTTTGTCCAGATGTAAGATACATGAAAATGCTTGAAACTCTTCCCTTTTTTTATAGCTTTAAAAATTCTGGTGTACCAAACGGTTCTAGAAACAAAAATACGAAGCCTGGATTGACTATATTGCAAATGCTGACAATTAAGGACTGAAGCACAGTACCTGTTTTTAGAATAACATgtttgctcctctttccttttgacactgtgcttttataatattttaccaTCTTATTTTAATAGTCATTGTGTGCAATCTTAGACGATAAGTCAGTCCCTTTTTGTGTGCTTGCAAATGTGTGGTAAAATACTGGGGgtataagaagaaaaaaaacaaccctgtTCCAACCCTACTTGTGAAGATATTAAATTTAGTGAAATAATAGctatattaacaaattaaagatGTAGATCGCTTGAGATAACTAACCTGAACCCCACCTACTTAGCGAACAGGACTTATCGAATGAATTACTGTGTTGTACAGCATGAGATGACAGACGTTTAGGATGTATTTAAAGTGTTATATTAGAAAGAAATTTTAAAAGATgatgaaatgtgaattatacatttttactttaatgctATTGCAACACCCACCCTCTCCACAAACACATCCCCTCCCTAGTCATTTACACTGAACCTAGAGTCCATGATTTGAGACAAAAGGAATTTAATGACTgagatatgttttgttttttaagccaAACTGAAATTGTGTCCTTAGTCCATCATGCTGTCTCCTGCTGTCCCACAATGTGTGATGGAAATACTCCCTTTGTCTGTTTACTTcagttaattttattaaataataattaaaatagcctacccatttttgtttatttacgtttgtgttacaataaataaatgtggtttTCAATATAATCAATA
>TU35194
TTTGCTGTAACTTTTTCTCTTTGGATCAACCAATATAAAAATCTGTCATCTTACATTGCAGCAATTGATTGCATGTGAAACCTTTTTAACAAAAAGCAGACATCTTTTTcataagttttttttctttctctgaagcattttttttgtacaatttcCCTGTAGTATGAAATGACCAAGCTATATAAAAATAGTGTGTGATGAATGCAAATATCCCATTTTTCCATTCACTTTTTCAGAGGTGGCAGTTATAGAGAATACTAAGTTAAAACAACTAGTTTCTAGACAGGATACACAAGGAACTTGGAATGCAAGACTTCACCATaagctaaaatatataaaactacatGTGGATTTTGTCTTCAACAGACAGTACCCAGTTTCtcataataaagcaaaaaatgtatacatatatagattttttttttctttttttttttttttttgtttaaattggatCCCTTCACGGTTTGTTCTGTACCTACtagtacaaaaatattttaagagtAAGTGCAGTACTAATAGGTACATGGAGGTTAAGAACTGGCAGAACCAAAACAAGGTAGTCATACAGAATACAGCTCAACAGAAATTCAAAACCACCTTGAATGTGATTTAACTAATATGAAGACACGGACCCAGAGAGGCACTTCCAGATGACATGTTCTGACTCCATGAATTCCCTCGCCCGTCCGAAGAGTAATCGCAAAACCAGTAAACCAGGTAAGGCAGATCGTGGATGTGAAGCAGTAATGGTATTGGCACTTCTCAGTTGTCATGCAGGTTCATTAGTGTATATTTCATTGGATTGGATTTTTGGCATATTTCCCAATGGTTTCCAACCAGCACGGACTGAATATAATATGGCAAACTTGCTTGTTGGTTTGCATTTTAGTGTTGCCTGGATTGGCATAGGACCAGATGTTAATTGTGTTCCTAATTAAGGAAGAATTGTATCACCGTGCTCTTTCGCAGTTTTGTGTTGAAGTGTGACTTCAGCGTTGGAATGACGGTTCTCGTCTCCCTCTCTACCAGGATTCTTTGCATGCAGAAGAGTTGGCTAAAAGCTTCTTACAGTTTTGATGTGGTGTCCTAATCAATCATTTGAACTGCCACCAATCAAAGATAATCAAGGGGTTAGGATCCCTGTTAAGATTGGTTTAAACAAAACCCTTTACTGAGATGGCAGAGGTGTTTCATATGACAAAGATTATAGGAAGCTGTCAAAGGAGGTTCAATTAAATCTCCCAAATCAGCCTTATTTCTCAGTTCCAAGACAAACAAAAGTGCTTTTAAGATGTGTATTCCAGTATCAAATCTGCGTTATTCAGTCTCAATTGTATGTTGCATTCAGTTGGAAATGTTACAAATCAGAATATAGCATTTTTACTTAACATTATTAGATGTTTGTGGAGCTGTACTGGCAAGTTTATATAATACTacagattttatattttgtatcctttttttttggcagtgGCACGTCTTAAGTATATAAAAAGAGAGAGCAGCCGTgtgtatatttaagaaaatggaAGAGATTAGGTAAACTGTTTTTGTCCTGTCAAATACTgttgttcttaaaaaaataaaaataataataataattaaacaaaaaaAGTACGAGGAGCCGGCCATTGCCCCGAAAGTAGCAGCAGCGCTGGAAGCTGCTCTGCAGGATGAAGACGAGATTCAGGTGGACGCCTCGACCTTTGAAAGCATCGGCAACAAAAAATCTAAGTCCAGGCCTAAAACAGGAAAGAAGTCTAGCACGCCCACATCTGCATCTAGTCCTGGGAGTTCAGCGAGTCCCCTTTACCCACAGTCACGTGGCCTTGTCCCCAAATGAtcctgacactttttttttttttttaaacatggccCTGTATTAAACTGAACAGGGTCCAAACAGAAACACTGGTATGAGATTTTTTTATGCTTTGTAACTGAAATCTACTATTGCATTTACCTTCTGCATCTTCCCTTTCAATTACTATGACAATTACTaccactttttttgtttggatttgtATTGTTAACCTGTACGATCCCAGGAAGAAAACTGACTCTTGATTTATACTATAATACAATGCAAACTCAAGTCGAACACGACTGGCCTTTAAGTCAGTGATTTGCATTTCAATGAAATGCAACATGAATCCGGGAAAAAGAAAGATctgatctttttttaatgttgttaaaatatgtagTGTAGTCCCCAGAACGTCATGTTCCTGCAATGGCTCCGGTCTTCTTTGAGACAGGACACCTGTGAAAAGCATGAGGCAGTATTCAGAAGAGAAGTTAATCAAATGTTATGCCACTGTCAGCTGGGCTAGACAGTATGTTTCAGTCACATTCTTCAGCCTCTTTTACCTTCAGATACAATTATATTAGTTCAGCAgtccaaaacaaatgtatcagtTCTTAAACCCACGATATATGAATTACTGATAATGCTCGTACTTCCATTAACATTACTTTACTTAAATAACGCTAAAGATGCGACCAGAGTATCCTatattttcctatttttgtattacatcaCATACACTAAATGAAGAAGAGGTGTATTTTGTTAAGTTTGGGATCCAGCTACATGCATGGTACTGTCATTCTGAGCTGTGACGAGCTGAACAACTGTGTTACCTAGAGACGATTTAAGAGAGACAAATATGCACACCAAATATACAAAGACTTCATGGTGCCTTACAGAAAGCTAACCCTTTAGCTCATTTGCATAGCTTGGAAACAACATTGGGTATTGCAGTCTTTAAGGGAAGTAAACATTGGTACATAGGCACCAGACCTTATTTCCACTCAGAATTAACAGTGCCGTTGCCCAGACTAAGCATTCTCTCGTGGTGAATCCAGAATTCTACTTCCGGATCTTTTGAATACTGCCCCTTTCAACCCTGTTTAGTGCCACTGCTTGCTGCTATTATAGGATAGGATACACCTATATAAAATACGTacactatatgtatatacaggAATGGATACTTTGCATAAACTGTGGACAACAAAATGTCTAGAACTAAActttgcaaaataatacattctaatttatattgtttttttgttttgtttatgaagaCAAATGTAGATAcgctttttgttaatttttttttaaatctttattttctgaacaaatatttttatttggggtTGTATCATTTAAAGTTatgtatagatttatttttgtgtatcatttgggtttctgaaatgtgatttttgtttttgtttttcggtTGGTTTTTGTCCAGATGTAAGATACATGAAAATGCTTGAAACTCTTCCCTTTTTTTATAGCTTTAAAAATTCTGGTGTACCAAACGGTTCTAGAAACAAAAATACGAAGCCTGGATTGACTATATTGCAAATGCTGACAATTAAGGACTGAAGCACAGTACCTGTTTTTAGAATAACATgtttgctcctctttccttttgacactgtgcttttataatattttaccaTCTTATTTTAATAGTCATTGTGTGCAATCTTAGACGATAAGTCAGTCCCTTTTTGTGTGCTTGCAAATGTGTGGTAAAATACTGGGGgtataagaagaaaaaaaacaaccctgtTCCAACCCTACTTGTGAAGATATTAAATTTAGTGAAATAATAGctatattaacaaattaaagatGTAGATCGCTTGAGATAACTAACCTGAACCCCACCTACTTAGCGAACAGGACTTATCGAATGAATTACTGTGTTGTACAGCATGAGATGACAGACGTTTAGGATGTATTTAAAGTGTTATATTAGAAAGAAATTTTAAAAGATgatgaaatgtgaattatacatttttactttaatgctATTGCAACACCCACCCTCTCCACAAACACATCCCCTCCCTAGTCATTTACACTGAACCTAGAGTCCATGATTTGAGACAAAAGGAATTTAATGACTgagatatgttttgttttttaagccaAACTGAAATTGTGTCCTTAGTCCATCATGCTGTCTCCTGCTGTCCCACAATGTGTGATGGAAATACTCCCTTTGTCTGTTTACTTcagttaattttattaaataataattaaaatagcctacccattttt

Function

symbol description
kif3b Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including cilium assembly; photoreceptor cell outer segment organization; and sensory organ development. Part of kinesin complex. Is expressed in forerunner cell group and retina. Human ortholog(s) of this gene implicated in retinitis pigmentosa 89. Orthologous to human KIF3B (kinesin family member 3B).

NR:

description
PREDICTED: kinesin-like protein KIF3B isoform X2

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0048839 inner ear development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0048884 neuromast development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K20196 KIF3B; kinesin family member 3B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008051 True 4755 mRNA 0.43 10 40711479 40721745
TU35194 False 4084 lncRNA 0.35 3 40663972 40721691

Neighbor

gene id symbol gene type direction distance location
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding upstream 2926 40649143 ~ 40661046 (+)
AMCG00008048 LOC107747493 coding upstream 16806 40632644 ~ 40647166 (+)
AMCG00008045 NA coding upstream 39701 40608612 ~ 40624271 (+)
AMCG00008047 LOC104946955 coding upstream 85542 40569832 ~ 40578430 (+)
AMCG00008039 LOC108435221,LOC104957652,LOC107559463,LOC107747987,LOC105898346 coding upstream 396820 40252212 ~ 40267152 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding downstream 2612 40724357 ~ 40745265 (+)
AMCG00008057 NA coding downstream 174871 40896616 ~ 40922814 (+)
AMCG00008061 NA coding downstream 208367 40930112 ~ 40948904 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding downstream 228467 40950212 ~ 40959551 (+)
AMCG00008059 NA coding downstream 241404 40963149 ~ 40975884 (+)
G28032 NA non-coding upstream 386285 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 603767 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 660272 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 1059144 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1372751 39290968 ~ 39291221 (+)
G28140 NA non-coding downstream 29730 40751475 ~ 40755976 (+)
G28141 NA non-coding downstream 36953 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 39521 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 255909 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 294622 41016367 ~ 41017248 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 416734 40241312 ~ 40247238 (+)
G27974 NA other upstream 604586 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 829020 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 1071561 39510411 ~ 39592411 (+)
AMCG00008010 NA other upstream 1118365 39540220 ~ 39545607 (+)
G28395 NA other downstream 1271114 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1691887 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2383968 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2423060 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2570851 43292596 ~ 43305530 (+)

Expression


Co-expression Network