AMCG00008052


Basic Information

Item Value
gene id AMCG00008052
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40669670 ~ 40677744 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008052
ATGGAAGTGCAGCCCCTCTTCTCTCCTCCACACGCTACCACTCTGCAACCGCTCCCTACAGAGTTGCCGCACGAGAGCCTGGAAGGGGGGGCAGCAGCGTCCGCCTTTTCATGGCCCCGGCCCCTTAAGGCTGCCATGGCAGCAGGTGCCACCGATGACCAAGGCCAGATTACCGCAATAACGCCGGAGGACGAGGACGTGTGCAACGCCACCAAGCTTTTTGCCGGCAGGCCGCTGCGAGCAGAGAGAGAGTACAGAGAGGACAGGACGCCCAGGAGCAGCGAGTGCCCTGTGTGCGGGGCCCTCTTCAGCACGCAGGACAAGCTCCGTATACATACCTACTGTCACTCTGGGGAGAAGCCCTTCCGCTGCTCTCAGCCCCAGTGTGCCAAGGCCTTTGTCTCCAAATACAAGCTTTTCAGACATATGGCCACACATTCTCCACAGAAGACACACCAGTGCACTTTCTGCGAGAAAATGTTCCACCGGAAAGATCACCTGAAGAACCACCTCCAAACCCACGACCCGAACAAGGAGGCCTTCAAGTGCGAGGAGTGTGGCAAGAACTACAACACCAAGCTGGGCTACAAGCGGCACGTGGCCATGCACGCTGCCACCAGTGGCGACCTCACCTGCAAAGTGTGCCTGCAGACGTACGAGAGCACGCCTGTGCTGCTGGAGCACCTCAAGAGCCACTCGGGCAAGTCCTCCGGCGGCACCAAGGAGAAGAAGCACCCCTGCGACCACTGTGACCGCCGCTTCTACACCCGCAAGGATGTGCGGCGCCACATGGTTGTACACACGGGGCGCAAGGACTTCCTGTGCCAGTACTGTGCCCAGCGCTTTGGCCGCAAGGACCACCTGACCCGGCACGTCAAGAAGAGCCACTCTCAGGAGCTCCTGAAGATCAAATCGGAGCCACCCGACATGCTAGGCCTCCTCAACTCAGGCTCACCCATCTCTGTGAAGGAGGAGCTCAGCCCCATGATGTGCATGGCTGCCTCCAAGGACAACATGATGGGCAAGCCCTTCAGTAACAGCTTCCCCATGGGCATGTACAACCCACACCTCCAGGTCATGTCCAACTCAGGAGTGTCACACTCGCACACCTTGGTGCCGAACTCACTGGCCGCCATGGGAATGGGCTGCCCCATGGATTCCCCTtcccccctccaccaccaccatcaccaccaccaccactcgCCACCACAGCAGCCCCAGCCACCCAAGTATCAGCTTGGATCTACCTCATACCTGCTGGAGAAGCCCCTCAAGGTGGAAATGGAAAGCTTCCTCATGGATCTGCAGAGCGGGCTGCCCGTCTCCTGCGCAGAGTCCCATCCCTCTCCACCCAAGGACGGCCTGGAGCACCAGCAGGCCCTAGACGACCTGTCCGGGGAGCACCTCCTGTCCAAGAGCCCGGCCGTCATTGCCGAGTCTCTCTGTGCTGCTAATATGGACTTCTCCCACCTGCTGGGCTTCCTGCCACTGAACCTGCCTCCGTACAGCCCGCCCATGTCCTCTAGTGGGTTAGTCATGGGTTACTCCTCCCAGGGGGAGCACCAGCCTCCTCTTACCTCTTTGCAACCTCAACCTCAAGAGAGCCAAGGCTCTGGGAGTGGCTTAAGCCTCGGATctctccactctctccctccagtgTTCACCAGCAGCCTCAGCACAACCACCCTGCCTCGCTTCCACCAAGCATTTCAGTAG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K19486 PLAGL2; zinc finger protein PLAGL2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008052 True 1716 mRNA 0.60 3 40669670 40677744

Neighbor

gene id symbol gene type direction distance location
AMCG00008044 NA coding downstream 253912 40394078 ~ 40415758 (-)
AMCG00008041 NA coding downstream 312923 40328731 ~ 40356747 (-)
AMCG00008043 NA coding downstream 371002 40289650 ~ 40298668 (-)
AMCG00008040 NA coding downstream 443264 40221367 ~ 40226406 (-)
AMCG00008034 NA coding downstream 532218 40132543 ~ 40137452 (-)
AMCG00008055 NA coding upstream 78039 40755783 ~ 40769324 (-)
AMCG00008054 LOC105022343,LOC103467740,LOC106572463,LOC103385599,LOC106567217 coding upstream 142105 40819849 ~ 40828516 (-)
AMCG00008056 NA coding upstream 169258 40847002 ~ 40848749 (-)
AMCG00008053 NA coding upstream 190909 40868653 ~ 40875437 (-)
AMCG00008058 NA coding upstream 304152 40981896 ~ 40982690 (-)
G28119 NA non-coding downstream 1808 40663917 ~ 40667862 (-)
G28110 NA non-coding downstream 5910 40659881 ~ 40663760 (-)
G28095 NA non-coding downstream 36906 40627777 ~ 40632764 (-)
G28036 NA non-coding downstream 392023 40277163 ~ 40277647 (-)
G27949 NA non-coding downstream 822626 39842331 ~ 39847044 (-)
G28139 NA non-coding upstream 70562 40748306 ~ 40750443 (-)
G28190 NA non-coding upstream 305875 40983619 ~ 40984904 (-)
G28203 NA non-coding upstream 340500 41018244 ~ 41019422 (-)
G28206 NA non-coding upstream 365952 41043696 ~ 41044047 (-)
G28241 NA non-coding upstream 451394 41129138 ~ 41129628 (-)
AMCG00008042 NA other downstream 381096 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1165078 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 1577775 39088557 ~ 39091895 (-)
G27720 NA other downstream 1613991 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 1620073 39032787 ~ 39049597 (-)
G28202 NA other upstream 338415 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 521745 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 728047 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 1169189 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 1405730 42083474 ~ 42089493 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location