AMCG00008060


Basic Information

Item Value
gene id AMCG00008060
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40993721 ~ 41013873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008060
AGGACTTGCAATCTTCATGTTCAAttctggacttttttttttttatatatatatattattagttaCAACGTTACACAAACAAGGAAGTGCTTTTGTTGCACCAAcaaggtgtgtttgtttttgtcagccCTGTGCGGGTTGCATTGCTTAAGAGCGCAGACTCGCACTCGACGATATTCTTGCAAATCGGCACCCGTTGCTTTTcattgtagtttttgttttcaaaagccTAAATTAACCAGGAAGGCAGGCCAACATGATTCCCGACAGTGCCCCGCAGCAAGACGTGTACCAAGCACCGCAAGATTTGATCAAAGAAGCCCACGTACAAAACTTTGCACAATATAAAGAACTTTATATGAAATCGGTGGAAAACATGGAAGagtTCTGGGGTGACATCGCCAAAGAGTTCTACTGGAAGACCAAGCACACGGGCCCGTTCATGGACTACAACTTCGATGTGACGAAAGGCAAGATCTACATCAAGTGCATGGAAGGAGCCAGCACTAACATTTGCTACAATGTCCTGGACAGGAATGTCAATGAGAGAAAGCTGGGCGATAAAGTTGCCTTCTACTGgGAAGGAAACGAGCCGGGAGATGAGGAGAAAGTGACGTATCGTGAATTGCTGCAGCAAGTCTGCAAATTCGCCAACGTCCTCAAATCGCAAGGTGTGAAGAAAGGGGACCGCGTGTCTATCTACATGCCCATGATCGTGGAGTTGGTCGTGGCCATGTTGGCCTGTGCTCGAATCGGAGCCACACACTCCATTGTGTTTGCAGgattttcagcagaatctctgTGTGAGCGCATCTTGGACTCCCAGTGTTCACTCCTAATCACTGCTGatGGATTTTACCGTGGAGACAAACTAATCAACTTGAAGCTGATCGCTGATGACGCACTTCAGAAATGCCAGGAAAAGAACTTCCCTGTGACAAAATGCATCATGATCAAACACCTGTCCAAAGAGGAGGCCAGCTCCCAGCCCACGCCCTGCTCCCAGTCCCCCCCAGCCAAGAGATCCTGCCCCGGTTTGCAGGTGCCCTGGAACCCGGAGGTGGACCTGTGCTGGCACAGCCTGATGCAGGACGCCCCCGCTGTGTGCGAGCCCGAGTGGTGCGAATCCGAGGACCCGCTGTTTATACTCTACACCAGCGGCTCCACTGGGAAGCCCAAGTTTGAAGGTCTCCCCACCTACCCAGACATGAGCCGCCTCTGGGAGATCGTGGACAAGTACCAAGTCACCAAATTTTACACTGCACCCACTGCCATCAGATTGCTGATGAAGTTTGGAAGTGAGCCTGTTCAGAAGTTTAAGCGAGACTCCTTAAAAATCCTGGGGACAGTGGGAGAGCCCATCAACCCCGAGGCGTGGCAGTGGTACTACAATGTGGTCGGGGAAAAGAGGTGTCCCGTTGTCGACACCTTCTGGCAGACCGAGACGACCTTTCCTTTCTTTGGGGTTGTTCCTGCCATCCTGAACGAGTCTGGAGAGGAACTGGAGGGACCAAGCGAAGGATATCTGGTGTTCAAGCAGCCTTGGCCAGGTGTGATGAGGACCGTCTATGGGAACCACCAAAGGTTCGAGACAACGTACTTCAAGAAATTCCCGGGTTACTATGTAACAGGAGACGGGCACCTGCTGAGCACGGCCGAGGTGGAGTCTGCCCTGGTGGAGCATGCTGCCGTGGCTGAGGCGGCGGTGGTCAGCCACCCACACCCGGTCAAGGGCGAGTGTCTGTACTGCTTCGTCACCCTCAAAGACGGCTACGAGTACAATAAGGGGCTGGAGGCCGAGCTCAAACAGCAAGTTAGAGAAAAGATCGGAGCTATTGCCACCCCAGACTACATGCAGAACGCTCCTGGGCTGCCCAAAACAAGATCAGGGAAGATTATGCGTCGAGTGTTGCGAAAGATCGCCCGGAACGATAAGGACCTGGGGGACACGTCAACGCTCGCTGACTCCGCGGTCATTGAGCAGCTCTTCAGAAACCGCTGCTGCACCGCTGTGTAAACCCCACCAGGAGTTACACAGACAGTTTTTAgcgcaaagaaaaaaaaaaaaatctaaccatAACAAAATAATGGAAGAAAAAGTTGTACAAATTgtggagggaaaacaaaactatatatatatatatatatatatatatatatatatattttgttttaacaaagatagtctccttttattttttaatttaccccTAGATTTTAGTCCTATCCCTCCTTTTCATGGTATTTTATCTGCTTCTGAGACTCTGGGAATCCTTTATGTGTTTACCAACCTacgtatatatgtgtgtgtgagtgtaaatataattattttgtttgcccATTACATCCACGAGTGCTCTCAGTGAATGGCCAGGTGCTTAAAAATGAGAGAACACTATGAATTTGCCAAACATTTGCCACTGCCTTTCCCCCCCGCACTGTTCCCATATTTTGTTCCCCAGCTGTTCTATCTGGTTTGTTTTCGCTGATATTTTTACGGGTTACAGAGTTGATGTTTGCTTGCTGAAGATCAGTTGATCGAGTCAGCTTGCTTTTTATAGTCTCGGATGTGATTCACTTTGAGTTGTGACTATCTGCGTGTTCATGTGCCAAGTCCTTTTGCAAAAGAGCTGATGGATGTTAAATTAGCCCCCGTTCGGAACTGTAATCATGACGCAAAGACACCTGGCTGTGTGAAGGACATTTTACACTCACTCCACTCACTCACTCCACACTTGTATTCTTTCCGCTAttatatttcactgtatttatatttaaatgctcGGCAATGCAGTGTCCTGATTGGCATAGCTCTGTTGCTCATGCTTCTGTAgtaaaaaaactcaaaacaaaacaagaaaagtacccctgtttttctttccagcaCGTATCTTTTATACTAAATTGCCTGCCTTTCCTGAGATATCTAAATGGCTTGTAAACGGCGACATTTATATGAAACTTGGATCGTAGATTTGTGCTCtggtgtatgtgttttttgttcctttctGAAAGTGGGTGTATAAATATGAAACGCAAGCCTCTCAACTGGAGTGCTGTAGATTTCCTGACAGCAGGCAAATTCCCGTGTCCCTCACTCCCATCCCCAGTGCTCCTGCAGCCGACTGCCGTATCCAATCCAAAGCCCCATTCTCCTTCCGAAATCATATTGCATTTCAGTGTCATTGCTACGAACCAGTCCTGGGTCAACTGTTCTGCTGCATGATACTACACAGAGGTGGAGTAAAACTGTGGAACAAACCCCGCGACTTTAGGGTAACCTGGGGCAGTGCAGGGCGAGTGGGTCTGCATTCCACAATTCCAACATGCAGATTCCTGGTCATTTTTCCTGCTTATTCAGGGATTCTGattgttttatgcctttaaTTGACAGGTTAGAGAAACCATGCTTAAGATGCATTCCAGTAGAGGGCAGCAATTTCATAGTTTTGATGGACTGCAGTGAGGAGCATTAGTCAGGGCTAAATGAATAGCCATGGcccttttcttttgctttcctCACATGAACCCCATGTctgttatgaaaatgtaaacagtatTACATCTGTCAATGAGTTGAAAACGGCAGGTGTGatgttgtattgatttgtgttgtgttaattCCACGTGATGGTGTTCTCCCAGTCTTATCATAGAAGCATGCtcctttttattgatttatttttaacatttcttgtAAGATTGGAGACTCCCAGACTCGGTGGCTCGGAGCTTTATGCATCTGGCAAGGCTTCTTATGCGTTTGAAGATTTACATTTGTAGTGCAGTGTTTCGTGTGCGTTTGGTTCGTGTCCGTCCGTTGCAGTTGGTTTAACTGAGTGGCTGCAGGTTTCGGTGAATTAAAGGAAAGGGACTGATGTtaaggtgtgtgtatgtgtgcgtgttcAGCGTTGGTCTCCCATTGGTGCAGTGGTTGTTGATTTTGTCTCTGAAAGGACACTGTAAGAAAGATGAGGAGGGCAATccatttaaaactataaatcaataaccagcatgtttttttttttcatgtatacaaatatacaaaagcCTTTAATTTGTTATCATGCACTCTCACTACAGCTTAACATGAAAGATGTAGGGCTGCATGTAAGAAATAAGTCAaatttaacatgcaaatgaaaGTAAAAGTGACAACCTAAAAGAATGGGGACCATGCTGTGTGAATATTTGGTTTATGTCGGAAAGCGCGATGTCAAATCTTTCACGGTTCATCagtatgaaatatttttaaaataaagaagtggGTCTACAGAGACCATTTGAATGCAGAGTTTGTTTTTTGGCTATGCATATATAAGAGAACTGcacaatgtttcattttaaaatgcaactaTTTCCTTTTGGTTGTCTAGTATTTtatcaatctttttttatttattttagctcatGGGGAAAAATATGtgaaggattgtttttttaaatgtgaaatccCCTAGCCGTAATGTTGGCCCATTGTGGTGACTGGCATTTAAACCGGATTCCCTACCTCttgctgaaatgtaaaaaacgcacaattcaaatacaaaatatgtatgtttctaCAGAAATCATGTagagtgttttgttgtgttttatgtattaattttttttctttttatagtttCAGGGAAATCTTTAGTCAAAATGCAGGTTTTTAAAGAAGCACTACTGTTGGTGCATGTTCTTCTGGGCACTGATTCACTATGCTTTTCCTTCTCTTTACCCttcatttaatatgtatgtaatcCTGTCTGTAATATTCTAGTCTCCTGTGTATGATTCTGTGTGAAAGACTCCATGGCTTTACTTTCTATTTACATGCGTTTTATTCCAGACAATTGCGCTAAAGATCTGTGATTTCTCCTCTAAACCACACATTTTGTGGGTTGTAGGATTTAAAGTtgtttaatggaaatgtaaagttAGATCCTAAAACGTTCAGCTGATTACATGTTAAAAGGTTTTTTCAAGCATGTGGtttaaacaggaaatgcaaAGTATAGGCATAGGTACATAGGCATTTGAACATCAGTGCTCAAACCAGTGTCCATGGAGTTAGAGGAATTTGGACGAACGTGTATATTGAAAGGAATAAAATGCTGTGTATGCccgttttattttcttttaatttgttccagTTCCACCTTCCCCCGAATATCGATCAATATCCGAACTGTAGGTGTTAAGAGGGCAGCACTGTACCCCTTGCTCTGGATTGTATAACCACAAACCATTCATGTAATGAACCAAAAtacaggggtggaaagtaactACAACTACACTCGTTattgtaattgagtagctttttcgtgtacttgtacatttttgagtatttttaaaatttgatgATTTTACTTTTgagttttgaaatgtatgttttgagtGAAGTATTGTAGTTCGCTACTTTTATAAAGGCATTCGTTACAGATTACACTTTTGTAGGCTGTCACAGAAAAAATGTgggtgacagacagacaaatagacCAATAACTGAAGTAGCAACACATTCAAATGTCCAGCATCCCGCCCACCGCgctcagcagccaatcacagtgcgTGTGTGATGCTACGGCTGGTCCGTCAATTAGTCACGGATTTGCAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008060 True 5607 mRNA 0.43 16 40993721 41013873

Neighbor

gene id symbol gene type direction distance location
AMCG00008059 NA coding upstream 17837 40963149 ~ 40975884 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding upstream 34170 40950212 ~ 40959551 (+)
AMCG00008061 NA coding upstream 44817 40930112 ~ 40948904 (+)
AMCG00008057 NA coding upstream 70907 40896616 ~ 40922814 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding upstream 248456 40724357 ~ 40745265 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding downstream 97183 41111056 ~ 41118960 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding downstream 110030 41123903 ~ 41128874 (+)
AMCG00008070 NA coding downstream 336555 41350428 ~ 41356833 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 544547 41558420 ~ 41563189 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 756077 41769950 ~ 41789678 (+)
G28174 NA non-coding upstream 15293 40977654 ~ 40978428 (+)
G28143 NA non-coding upstream 232088 40761266 ~ 40761633 (+)
G28141 NA non-coding upstream 234711 40758698 ~ 40759010 (+)
G28140 NA non-coding upstream 237745 40751475 ~ 40755976 (+)
G28032 NA non-coding upstream 716034 40277414 ~ 40277687 (+)
G28173 NA non-coding downstream 2494 41016367 ~ 41017248 (+)
G28178 NA non-coding downstream 4371 41018244 ~ 41019386 (+)
G28234 NA non-coding downstream 115263 41129136 ~ 41129628 (+)
G28263 NA non-coding downstream 185580 41199453 ~ 41201854 (+)
G28298 NA non-coding downstream 350722 41364595 ~ 41366619 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 271976 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 746483 40241312 ~ 40247238 (+)
G27974 NA other upstream 934335 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1158769 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1448114 39540220 ~ 39545607 (+)
G28395 NA other downstream 978986 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1399759 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2091840 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2130932 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2278723 43292596 ~ 43305530 (+)

Expression


Co-expression Network