AMCG00008062 (mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429)


Basic Information

Item Value
gene id AMCG00008062
gene name mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40950212 ~ 40959551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008062
ATGGCGGATAGGCAGAGCATTGCTAGTGCAGAGAGTGACGGCAAGAAAAGGGCTGGAGCTGCGTACTGCCAGTTTATGGACATGCTGTTCCCTGGTTGTATACCTCTGAAGAAAGTAAAATTCCAGGCCAAACTAGAACATGAATTCATTCACAACTTTAAACTGTTGCAAGCAAGCTTCAAGAGAATGGCAGTTGACAAAatTATCCCAGTggacaaattaataaaaggaAAGTTTCAGGACAATTTTGAGTTTGTGCAGTGGTTTAAGAAATTTTTTGATGCCAACTATGATGGGAAAGATTATGACCCAGTAGCAGCTCGCCAAGGACAGGAAACCATGCCTATGCCCAACCCCGCCACACCCGCCCTGAACAAGCCCAAGAAAATCCCCAGCACTGGCAGCGCAGCCCCTCAGAGGCCTTCCGTGGCGAAGGCGCCCCCGAAAGTGGCTCCTGTGGGTCTGCGGAGACCGGGCGGTGCAGGAAACGGGGACGAGGAGAAGGCGGAACTCGTCCAGGAGGTTAATTTACTAAAACTCACAATTGAAGacatggagaaagagagggatttTTACTTCGGCAAACTGAGGAATATTGAACTGATCTGCCAAGAAAAGGAAGGGGAGAACGATCCCACACTGCAGAGGATTGTTGACATCCTTTATGCCACAGATgAAGGATTCGTCATACCAGATTCTGAATCTCAGGATCAAGAGGAATACTAACATTCCAGACTGGATGTAACTTATAGACCACCTGTACCCCCCCATCAGATCATGTTATGCATTTGGTTCTGATTGAACTTTATATCAAATTGTTTTGtcggcaaaaaaaaaaattgaagtacCTCTTTGACCCTTGACCTGAATAAATCTAGAATTCTGATGACAGCAGAACTGTAATTTGTTTccagcaggggaaaaaaatcgaTGACATTCTGTCTTCAGACCTCGCTTCACGTTTTCTTTGATTTTTTAGGGAAGTACACAGGTGTTTGGCACCTtcaatgtttgtcttttgtttgttcttaaagCTTTGTCACCTTCTCACTGTTGTACTTTTATAGAAGTCACTTTCTAAAATGTTCTGGTTTATGGATTATTAAATATTGcagaaatgtacttttttttttattacattttaaaagcaaaatatcaCTGTTGGGTTCAAACTTTAAAGACAGAACATCAGAAATAATTTGGAAACCTATCAGAATCTGATGTTCTgcctaaacaaaatacaagtgaGTGTCTTTGcagtttttcctgtgtttttgtatttcagcaACACTGAATTTTCAAGATTGCAAACAAAGTTACATAACTTGTATACTGTATATCTCTTATCTGCATTTTACTGAGACAGATGCCAGGACTAAGCTTGGACTGTACTTATTGTGAAGTCTTGGTGTGGTGAAGGGGTCTGTCTTTGTGAAGAGGAGAGCCATTTAGTCAGTTTATATGCAAGTAACTGAGTGTGGTTTGAGTCTGTAATTTGTTTGATGTTACTAGACAACACCTGCTGTAGCATTTTGAGTCAGATTTTTGGATTCATTCtgaacactctcacacacactgttttcaTGACATTGAcactgtttctttttattattattatttaaatatagagaaggaaaataatttgTGTCCAAGGGGTTGTGTTCAAGCTCTCCCAGGGTCCGTTACTCAGTTTTGCTTCAATACTGCCATTCTTCTGTATcggaaaacaaaaaattaaatagaactgacttcttttttttttcttaaataaactgtttattagtGGTAAATGTTCTCAAAGCTCAGACATtgaattttcatattttcagctcttttgtttgtgttcgattaaaaaatattgtggtGGAGCTCTCAAATGCGTCTGGCTCTTCCGCATAGGGGGACCCTTTCCCAGAGAGAAAATACCTCGGTCTTCCACATTTACAATGATCACGAGAAGTCGCATTTAGAGTATGGTTGGAGTACCCAGCAATAAATGCTGAACGATTGAGAGTAGTGTGTAGCGGACACTGATAGCGACCCATTTTCTTCTGGGAAGCATAACTGACTCCCAACGGGCATGACTTCTCAGTTGCATTGCCGTGTCTTCGTGCAACCATCGGCTCAGTATTCTGAACTTACAGTAGGGCTTCACAGTCCCACAACTTGGGAGCCCCAAGTTTTCTAGTTTCCAAGTGAGTTCTTGAAAACCTAATTCaatccttaatttaattaacaacttGCTTGGGTCCTTTTAACAGTTTCCACCTCCTGGAGACACTCAGGTTACGTATAAAATGTTACTCTCTAGTCCTTTATATGGCAGAAAAGCATTTCACAGTTCTTCTTGCGGGAATGATTTTTCTCCCACAGTAAGGGTTCTGTTGAGGGCGGTGACTGAATACTCGATGAGAATCAAAACCAGAAGACCGCACGGGGCCAAGGACTAGGATTGGGAAGCCCTGATTAGGCATTAGATTTTACTGGATATGGTGCCCTGTAGCTCAAATCTCCAAATTCTGCTGGTGTGCATAACAAAGTGCAGAATAACACCACTGTTCCTCCGAATTCATAACCGATGGATACGTTGCTTGGGTAGCTGCAGATAGTTCTGAGCATAACCCGTTAAAACGCAAGTCATGATGTGTGGGTTCGTTGGGGTTCTGGGTTTCACTTTAGAGCATTGTCCTGTCATGGGCCTTTCCTCCCCAAAGAGTTGAGTGCTTCATTGTGAAAAATGCAATTACCATTTCCACAACCCTTGAAAGACTACAGATTGCAGTTCAACTTTGACCCAGGAAGAGAATAAAATCTCATGGTAGTGTCCCCCCCTCCTTTTTTGAATTCATTTGGATTGATGACTGCAAAATATAGGCATTTGTGTCCTCTGCTAATCCCATGAAAGAGGTGTATGATCAATCCTCTTCTAGGTTTTTGACAGCTTTTGCACTGAGTCAGGAAATTCTCCACTGTAAACCagatgattgtttttttgttggtttatttgtttagaaATTGCACCATCGCAAGGACGTAAAGTAACTAGCCTTTTGGGAAAGATTTGTTAAGTGTACCAAGGTATATGAACATGTGGCTTTTAAAATCTGTAGTAATGTAAAATTCCTCATCAGTTTGTGGTTGTGCACCAATATAAGGTCAAGTGAATACTAATCTCATACCATACATGATCTTCCATTTCATtataatttgtgccaaaatcTAATTTTAGCCTTGTTCAGTCTTAGGCCAAATTTAGGTTTGCTTGCACTGAAATGTTCAATCCATTTTCTGGAAGTGTGTGTTAAGGGGAAACTTGGAAAGACTGTAAATAAAAGCAAGGAGTTGCCAAAAACTTACAGTAAACAAGCCATTGTTGAGGTGGGAAGAAATGCAGTGGTGCTATCTCTTAATGTCTCTTGTGGCCTTTTACAGTTTGTTGTCCTACGATTCTTGACACTGTGGACTATGTGCCACTATGGGTCTGTTTCTGCAGGGCgttccttttttttctgattgCTGGAATCGGTTTCTTATGAACAATAAAAG

Function

symbol description
mapre1 Enables identical protein binding activity; microtubule plus-end binding activity; and protein kinase binding activity. Involved in cell migration; protein localization to microtubule; and regulation of microtubule polymerization. Located in focal adhesion and microtubule cytoskeleton. Colocalizes with spindle.

NR:

description
EB1

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008062 True 3546 mRNA 0.40 6 40950212 40959551

Neighbor

gene id symbol gene type direction distance location
AMCG00008061 NA coding upstream 1308 40930112 ~ 40948904 (+)
AMCG00008057 NA coding upstream 27398 40896616 ~ 40922814 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding upstream 204947 40724357 ~ 40745265 (+)
AMCG00008049 LOC107707748,LOC107747492 coding upstream 240363 40698024 ~ 40709849 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding upstream 289166 40649143 ~ 40661046 (+)
AMCG00008059 NA coding downstream 3598 40963149 ~ 40975884 (+)
AMCG00008060 NA coding downstream 34170 40993721 ~ 41013873 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding downstream 151505 41111056 ~ 41118960 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding downstream 164352 41123903 ~ 41128874 (+)
AMCG00008070 NA coding downstream 390877 41350428 ~ 41356833 (+)
G28143 NA non-coding upstream 188579 40761266 ~ 40761633 (+)
G28141 NA non-coding upstream 191202 40758698 ~ 40759010 (+)
G28140 NA non-coding upstream 194236 40751475 ~ 40755976 (+)
G28032 NA non-coding upstream 672525 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 890007 40051890 ~ 40060205 (+)
G28174 NA non-coding downstream 18103 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 56816 41016367 ~ 41017248 (+)
G28178 NA non-coding downstream 58693 41018244 ~ 41019386 (+)
G28234 NA non-coding downstream 169585 41129136 ~ 41129628 (+)
G28263 NA non-coding downstream 239902 41199453 ~ 41201854 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 228467 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 702974 40241312 ~ 40247238 (+)
G27974 NA other upstream 890826 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1115260 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1404605 39540220 ~ 39545607 (+)
G28395 NA other downstream 1033308 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1454081 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2146162 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2185254 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2333045 43292596 ~ 43305530 (+)

Expression


Co-expression Network