AMCG00008070


Basic Information

Item Value
gene id AMCG00008070
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41350428 ~ 41356833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008070
tgaaatgtgttttgcaatTAACAAACTTCTTAATTACACAGAGTTTGGCTCATTTTGTCAAACATTAACGGTATGAGATCGAGGCCgacatacatgttttaaatatacgtACCAGAACTCGAATATTAATGTTGCTAAACGTATTCTGCCCAGAtgaaacctGGACTTGGTTGAAACTGTACGGAGCCGCGGTACTGCGGCAGCTCGTCGTGTATCACAGTGCCGCCGTTGGGATAGAAAGCAGGCACTCGGCGGTTGGGAAATAAATGGAGATTTTTTTAACGACGTTGGTAGCACTGCGGTAAAAGAAAATGGTGAAGGATCAAGAGGTCGAACGCATTGCcaagaagctggagaagatgGTCAACAAGAAGAGCACGgatggTGCTGCAGACTTGTTGAAAGAGcttaaaaacatcaacatgtCTTTGGAGACTTTGCAGTCTACAAGGATTGGGATGTCTGTCAATGCGGTGAGGAAGCAGAGCACAGATGAAGAGGTCCAGACCTTAGCCAAGTCTCTCATTAAATCCTGGAAAAAACTGCTTGATGGTGCTGAAAACAAACTCGACGACAAGAAGAAGGAGTGTTCTTCACCCGCCTCCTCGTCCAAAAACAGCCCGGAGTCGAGTGACCAGAGTTCAAGCAGAAAACAAGAGCCACCAAAGACACCCACTACCCCCACCACTCCAAAAATCACAGCATTCCCCCCCGCGCCGGTCACAACGGACAGCGTGCGCAACAAGTGCAGAGAGCTACTGGTGGCAGCTTTGCAAACAGACAacatgaaatataaaaccaGGCTGAGGAGCAGGATTTCCAATCTGAAAGACCAGAAGAACCCAGACCTGAGGAAGAACGTCCTGTGTGGAAACATTTCCGCTGAGCGCATTGCCTCCATGACGGCAGACGAGATGGCAAGTGCGGAGCTGAAGGAGATGAGGAAAGCCCTGACCAAAGAGTCCATACGGGAGCACCAGCTATCCAAGACCGGGGGCTCCGAAACGGACATGTTCATATGTGGGAAGTGCAGGAAGAAGAACTGCACCTACACACAGGTTCAGACCCGCAGTGCCGATGAACCCATGACCACGTTTGTTGTGTGTAACGAGTGTGGAAACCGATGGAAGttctgCTAACAAGAAGAATTCCTGCATTCCTGTCAAGATATATAAAGTGGAAAGCTGTACAGTATACAATGTTTCTTTGCATACAATTGTAGAAGGTGATTTTTGAGAAGGCACTTTGTTGaagggcatttttttttttcctgttttttattaaattgaatctAAGGTACTGTATCTGCagagcattgtttttatttggattgaGTTTGTTTTGGTTGAAGGGACAATTATAGGCTCTGCTTGGGTCTTTGTACTCTCTTTGGCATTTATAATCTGTTTGTGCCTTTTAAtgactgattatttttttctcggCTCTTCTTCACATCCTGCTTTTCAATGAAGTGTTGTTATATTCCTATATAAAGTATAGCACTGTTGCTTGTGAGGGAAAAACTGTGCTGCAAATTTCCCTTTACTTAATTTCCACTATGACCAAATGCAAAACTTGCAGCCAGTAGGAGAGAACTGTCTGAAGTGGCCAATTTTTTTTGCAACACAAATGGTTGTGACTGGATAACTCATGATAATTCCCCCCtgctgtttaaaagaaaaaaggaaactgattGTTCAGACAGCAGTAGAAGTTTaatgaaaaatgcttttttttttttttgtatgtgtatgtatccTGTTTTTCTTAAGCTTCTGTAGATTTCATTAAAAAGTTCCTAAAATTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006412 translation biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008070 True 1807 mRNA 0.43 10 41350428 41356833

Neighbor

gene id symbol gene type direction distance location
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding upstream 221554 41123903 ~ 41128874 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding upstream 231468 41111056 ~ 41118960 (+)
AMCG00008060 NA coding upstream 336555 40993721 ~ 41013873 (+)
AMCG00008059 NA coding upstream 374544 40963149 ~ 40975884 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding upstream 390877 40950212 ~ 40959551 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 201587 41558420 ~ 41563189 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 413117 41769950 ~ 41789678 (+)
AMCG00008080 pcmtd2,LOC102294427,LOC108440950,LOC103371493 coding downstream 443416 41800249 ~ 41812742 (+)
AMCG00008083 NA coding downstream 464835 41821668 ~ 41821994 (+)
AMCG00008084 NA coding downstream 469907 41826740 ~ 41832892 (+)
G28263 NA non-coding upstream 148574 41199453 ~ 41201854 (+)
G28234 NA non-coding upstream 220800 41129136 ~ 41129628 (+)
G28178 NA non-coding upstream 331042 41018244 ~ 41019386 (+)
G28173 NA non-coding upstream 333180 41016367 ~ 41017248 (+)
G28174 NA non-coding upstream 372000 40977654 ~ 40978428 (+)
G28298 NA non-coding downstream 7762 41364595 ~ 41366619 (+)
G28299 NA non-coding downstream 9893 41366726 ~ 41368640 (+)
G28300 NA non-coding downstream 14033 41370866 ~ 41371821 (+)
G28301 NA non-coding downstream 21218 41378051 ~ 41378293 (+)
G28303 NA non-coding downstream 31750 41388583 ~ 41388784 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 628683 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1103190 40241312 ~ 40247238 (+)
G27974 NA other upstream 1291042 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1515476 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1804821 39540220 ~ 39545607 (+)
G28395 NA other downstream 636026 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1056799 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1748880 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1787972 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1935763 43292596 ~ 43305530 (+)

Expression


Co-expression Network