AMCG00008071


Basic Information

Item Value
gene id AMCG00008071
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41240156 ~ 41248162 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008071
GGCTGTCTGTCTTGCAGGTACCTTCACTCGCTGTACCTGGGCGTCCTGAGCCGCTGGCGAGGTGAACATGAACGGCGTCACTTCTACTGGCGCATGATGTTCGAGAGTGCCGACATCAACATGCTGCGCCTGCTGGAGACCTTCCTGAAGAGCGCCCCCCAGCTGGTCCTGCAGCTCAGCATCATGATCCAGGGCAACGACATCCAGCCCCTGCAGGGCCTGTCTGCCTCCGCCTCTCTGGTCTCCCTGGCCTGGATGATTGCCTCATACCAGAAGGTTCTCCGCGATTCCCGAGACGACAAGATGTCCATGTCTTACAAGGCCGTCATCATCCAGATGCTGTGGCACCTCTTCACCATCGGAGCGCGCACCATCGCCTTCGCTCTGTTCGCCTCGGTGTTCCAGCTCTACTTCGGCATTTTCATCGTCACCCACTGGTGTATCATGACCTTCTGGATCATCCAGGGGGAGACGGACTTCTGCATGTCCAAGTGGGAGGAGATCATCTACAACATGGTGGTGGGCATCATCTACATCTTCTGCTGGTTCAACGTCAAGGAAGGGCGGACCCGCTACCGAATGTTCATCTACTACTTCATCACCCTCACGGAAAACGCTGCCTTGACGGTGCTTTGGTACCTCTACCGAGGACCGCAGACCACAGACTTCTGCGCCTTAATCATAGTCTGTGTGGTGGTCTGCAGCTTCGCTCTTGGAATGttcttcatgtttatttattactgcCTCCTACACCCGAATGGACCCATATTTGGGTCCCAGTGGGGGTGTGTGGAGGACGAGGGGCCAGAACCTTGTGCGGTGCCCCCTGATGTTGTAACAAGCCCCCCTAGGCCTCTGCAGAGGACTATGGGTGTGGACAGGGAACAGGTACCAGGAGACAGAGAAAGCTGCCTGCCTGTTTTTCAGGTGAGGCCCAGTGTCCCTCCTACACCAGTCCCTCGCACACCTCGGACAGAAGGGCCAGTCATTAGGATAGACTTGCCTAGGAAGAGGTACCCAGCTTGGGACGCCCACTTCATCGACAGGAGGCTCCGCAAGACTATCTTGGCATTGGAGTACACCTCTCCTGTCACTCCCCGACTGCAGTACCGAAGTCTTAGCGCCCCGAAGGAAGTGATGGAGTACGAGACCACAGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008071 True 1161 mRNA 0.56 2 41240156 41248162

Neighbor

gene id symbol gene type direction distance location
AMCG00008072 LOC106566342 coding downstream 11083 41220316 ~ 41229073 (-)
AMCG00008067 NA coding downstream 20484 41202908 ~ 41219672 (-)
AMCG00008068 lama5,LOC107666435 coding downstream 50525 41128916 ~ 41189631 (-)
AMCG00008066 NA coding downstream 145151 41086948 ~ 41095005 (-)
AMCG00008063 NA coding downstream 162017 41056126 ~ 41078139 (-)
AMCG00008074 NA coding upstream 61847 41310009 ~ 41310560 (-)
AMCG00008073 NA coding upstream 87416 41335578 ~ 41339688 (-)
AMCG00008075 LOC108275976 coding upstream 120526 41368688 ~ 41378417 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding upstream 344492 41592654 ~ 41593613 (-)
AMCG00008079 NA coding upstream 345640 41593802 ~ 41758872 (-)
G28241 NA non-coding downstream 110528 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 196109 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 220734 41018244 ~ 41019422 (-)
G28190 NA non-coding downstream 255252 40983619 ~ 40984904 (-)
G28139 NA non-coding downstream 489713 40748306 ~ 40750443 (-)
G28308 NA non-coding upstream 111982 41360144 ~ 41360468 (-)
G28309 NA non-coding upstream 116600 41364762 ~ 41366616 (-)
G28325 NA non-coding upstream 379199 41627361 ~ 41627752 (-)
G28361 NA non-coding upstream 559616 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 578280 41826442 ~ 41826766 (-)
AMCG00008069 rps21 other downstream 38331 41199489 ~ 41201825 (-)
G28202 NA other downstream 222908 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 951582 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1735564 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 2148261 39088557 ~ 39091895 (-)
AMCG00008076 NA other upstream 157629 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 598771 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 835312 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 1111738 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1512842 42761004 ~ 42764654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021481 xkr7 coding NC_007134.7 CM002907.2 8989168 ~ 9015026 (+)
grasscarp (Ctenopharyngodon idella) CI01000021_04061478_04074988 XKR7 coding CI01000021 null 4061478 ~ 4074988 (-)