AMCG00008072 (LOC106566342)


Basic Information

Item Value
gene id AMCG00008072
gene name LOC106566342
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41220316 ~ 41229073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008072
AAGTAAGACAGGCTAGGAGCGACAGAACGGCAGGGTGACACCTATGATGTCATCTGTGACTTCTGCCTGGTATGGGAGTCGCTCAATGGCCCTGTCTTTTGCCTGGCATGCTTGTGAGTGTAATTGACTGTTGCCGCTCAGGGATTCGTGTCTCCAATCAAGCGGCTGGTTTTCCCAAAAGCTCCACGCAGGCAGGCGGACAGGAGCAGCCTGTACAGGAGGCCCCTGCACTCTGTCCCCCTCTATCCTCCCGATTTCCTCATCCACCCTGAGAGGCTTCTGCACGACTATGTAGAGAAGGAAGTCAAGTTTCTAGGTCATTTGACCTGGGTGTCATGCTCACTGAACCCCTCTAGCAGAGATGAGGTCCTACAGCTTCTCGACATGGCCAGGAAGCTGAAAGAGCTGCCCTTGAAGACCACGCCGGAGCAGGACAGCATCCTCAGCCTGTCAGCTCGTTGCCTGCTGCTCACCTGGAGGGACAATGAGGAGCTCATCCTACGCATCCCCACCCATGAGATTGCCGCAGCCTCCTACCTGCGGGATGATGCGCTGCACCTGCTAGTGCTAAAAACGGGCCTTGGTGTGGACCCTGTtccagcagggggcagtctTGAGAGGGGGCACCCCAGCAGCAGCCTGGAGAGGAAGCAGGGAGCCGTGGGTGTCGAGGGGCGGAGGCAGACAGTCAGTAACATGGAGCGGCGTCCTGCAGGGGGCACCATGGAGCGCAGACACACCATCTGCAGTGTGGACTGGAAGATGTCCGGCAGGCACGAGCAGAAGCCGACCGGGGGCAGCTCGGAGATTAAAGCCCCGGGGGGAGGAAGCCTGGAGCGCAAGCAGGTGGGGGGCAGCTGGGAGAGGAGGCAGACCCGGAAGCCAGGTGGGAGTTGGGACAAGAGGCCGATGAGTGGGAGTTGGGACCGCCGGCCAGTGAGCGGGAGCTGGGAGCGGAGGAACGCAGCCGGTGTTGGGGGCAGTTGGGAGCGACGACACACAGGCAAGCCTGGGGGGAGCTGGGAAAGGAAGCACACATACGGGGGAAGCTGGGAACGCCGGCAGGCTTACAGTGGGAGCTGGGAGAGGGGCAAGTCCTATGGCAGCTGGGAGAGACGCAACGCCGGTATCAACCCTCTCGACCCCCTGAAGCCAACTCCCTGTCCAGACGCGTACTGCAACCTAGTGATCCTGGCTGTGGAAAATAGGGATGCTGCAGAGGAATACTGCGCCCTGATTGGCCAGGTGTTCCAGATAATCTACGGCGATCAGAACATCGAGTGTGTGGATCGGGCCGGGTACCACTACACCTCGACGCCGGACCACTACTGGCTCCAGAGAAGTGACAGCTGTCTGACAGATATGACATACGGCTATGAGGCAGATTTCAGCTGCTGCAGCTCTTTTAATGGCTCTCAAGAGACCTTCGACCCCTACTACAGCGAGAACTACAGCGATAACTCCTCCCTGTCTTTCCGGGAGTCTCGCCACAGCCTGGCCTCCGTGCACAGTGACCAGAGCAGCCTGGGGGTGCAGCTCCTGCAGGAGTACATGATCACTctGAGGAGCAAGCTTACCCCACAAGAGATCCAGCAGTTTGCCCTCCTTCTGAGAGAGTATAGAATTGGAGCCCCCATTGAGGAGTTCTGCCCAGACCTGCTCCAACTGTATGGAGACAAAAGGAAGTTCCTACTGTTAGGTATGAGGCCCTTCATCCCGGACAAAGACGTGGGTGTGTTCGAGAGTTTTCTAGAGAGCATCGGGATTCGGGAGGGCGGGATCCTGACGGACAGCTTCGGGCGGATCAAGAGGAGTATGAGCAACACGTCGGCCTCGGCAGTCCGCAGCTATGACAGCTGGTCCCTGCGCTCTGGCTCAGAGGACTTCAACCGCATGATCACTGACATCACGCATGACATCGAGGCCCTGGGCTTCGAGGAAGATGGGGACATTGAGGAAGAGGAAAACTACTTATGAACAGAGGCTGGCAGAGTACTCGAGACACAGAGATTTTACACtcaaattaattgtttgtttgtatggtGAAAGGTAAGCTATAGAATTAATCCACCATTTCTATTTGCATTcacatataattattattagaattatgTTTCAAATCAGATTGACTGGGTCTGCATTTAAGTCTCCTTCATCTGTAAGTACACATTGTCATAGACTGGGCTATTTATAAACGCAACAAAGATGACCCCAGTTACGGCCAAAAAGGCATATATTAACACAAAGAGAAACAGGCTGTTCAGTTATCTTGCTGTGCAAACTAATTAGAGTCTCGTCTTAGGGACTGAGCAGCACAAATCAGATCTGCTGTGGAAATATATTATGAAACACTGCGACACTGTCACTGATTCAGTTGGCATGACCTTCCTTGGAGCATTCTTTGAACCCCAGTGACTCTGGTAggcaaataaatgtatggatGACTGAGTTTTCAGAACAAGCTGTGCAAGACCTCAgggttatttgtgttttcttttcatctgtGCCTATTTTTTATGTAGCTAGAAAGCTTATGAGCAAGCAAAGGGTAATGGTTAAGAATACATCAAGAAGTAATATACAGATAACTGTATGTGTTAAagtcacaaaaaatattttttcttataacACGGATGGACTGTTGACCGCAGGCACTTGCCACTGTGCAGTATGAATATTGTGAGAAATCTGCTGAATGCAGCTAAAAATGTATTGCTGCAAATCTTTGCTAGGCTTCTTCCATTAAAAGAGAAAGTAGGCCATTACTGTTAGAACAATACACTGAGATAAAGCTCTGTCTTCCTAAACTATACGAAAGCTATTAAAGCAATGTGATCATACAGGAACAACCTGTGCCATGAAAATCAGCACTATGAAGTCATACATGTGTTTAAGAGCAGATTATATATGTAACTCTTCATGCTGTAAAGAAACATATGCTCTGGATATCATTTTGAGCAGAGCATTCACCCAGGTCGAGCAGGCAATCACTGCAGGCTGTACAAGAACAAAAGTGTGAGACAAATGTTGGGTTGAAGGCACATCAGTTCAAAAGCTTTTAAAGCAAAAGTGCCATCAGTCAATACGGGAATTACCACAGGGCAAACGAGCTCAAATGCGCTCACTGTGCAGGTGAGAAACGCCTTATTATCTACTTCATTGACCACAtgtaatcaaaacaaacacaaattaaatgtgcagtGGGTGAAAACAGAAAGAACAACCATGGCAGTAGAAAACATGGTCCTGTAAGCATTTGGCCGTCCCTGAGAGACCGTATTGGAGGATTAACCCCATTCTAAGTCTATCCTCTTagtaaaatgtttctttctggCCAAGGGGCCTGGCAGGGTATAGTATGGTCCTAGAGATAAATCAGAATATAGGGTCACCCATCAATCACACATACCAGTGTTTTAGATGTCCTGCTCGGTATCTGCCCAGTCCTGGTTTTCAAACATACGATTAGCAGGCATGAGTCGAACATATGGTTTCCTCCTTGGTTTGCCAAAACATGCCATATTGTTCCAAGACATCTGAGATATTTTggcttatttgtttgttttaatgttttttttaagattcaaGCAACATAGCCAGAGGCAAGGTTAGATTGTTTTAGTTCTGCACATTTTTCTCACAGAAGAtcacccctccacccccccaatACAATTTAATCAGCAATCCAGAATTCGCCCGATGGGACTGCAATAGGAAACAACTTTTTGATATACAGCGGCCTCTGAGGGATAGCTTGAGACactgacatttatttcacttacCATCTGAAACACATCTAAAGCCAAGCACAACCACCACCTGACACATCCCTTTCCACACCCTCCAGACATATCAACCTACTAGAGATTCAGTGCAAGTTTCAAGAAAACCTAGAATGCAAAACCAAGGGCACCTTTTGTTAAggcctgttttttgtttaataaataaaacagcacttTGTTTATGCATCACACGATGTCAGGTTTATGGTGTACAAAAGTATTGGCTATAATAATGTGAAAGTAGTACCATTTTTTGCATTCCCAGTTCTGTTGTGAATAACTTTCCAGGCCATCTCTGTTTGAGAAGGGCAACTTGAGTCTCAGATTGGCCATAGATGTGACATTTCTGGTGTCGTGTTAAATCATTAATTCCTGGTCTCACAAGAGTCAActttcccaatgcattagccctgTGGTAGAGAACAATCATTCAACAGCAACTGACTGGAGGGAGAACATGTTacataaaagaacaaaataagttTGCCAATGAATTGCCCCTTGCCTTTCTGTATGTTATGTCATAAAAATATctcctgaaattaaatattggtAACTTAATAAAACTAACTGTGGTTGGAAAGAAAACATA

Function

NR:

description
PREDICTED: cerebral cavernous malformations 2 protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008072 True 4374 mRNA 0.48 9 41220316 41229073

Neighbor

gene id symbol gene type direction distance location
AMCG00008067 NA coding downstream 644 41202908 ~ 41219672 (-)
AMCG00008068 lama5,LOC107666435 coding downstream 30685 41128916 ~ 41189631 (-)
AMCG00008066 NA coding downstream 125311 41086948 ~ 41095005 (-)
AMCG00008063 NA coding downstream 142177 41056126 ~ 41078139 (-)
AMCG00008058 NA coding downstream 237626 40981896 ~ 40982690 (-)
AMCG00008071 NA coding upstream 11083 41240156 ~ 41248162 (-)
AMCG00008074 NA coding upstream 80936 41310009 ~ 41310560 (-)
AMCG00008073 NA coding upstream 106505 41335578 ~ 41339688 (-)
AMCG00008075 LOC108275976 coding upstream 139615 41368688 ~ 41378417 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding upstream 363581 41592654 ~ 41593613 (-)
G28241 NA non-coding downstream 90688 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 176269 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 200894 41018244 ~ 41019422 (-)
G28190 NA non-coding downstream 235412 40983619 ~ 40984904 (-)
G28139 NA non-coding downstream 469873 40748306 ~ 40750443 (-)
G28308 NA non-coding upstream 131071 41360144 ~ 41360468 (-)
G28309 NA non-coding upstream 135689 41364762 ~ 41366616 (-)
G28325 NA non-coding upstream 398288 41627361 ~ 41627752 (-)
G28361 NA non-coding upstream 578705 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 597369 41826442 ~ 41826766 (-)
AMCG00008069 rps21 other downstream 18491 41199489 ~ 41201825 (-)
G28202 NA other downstream 203068 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 931742 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1715724 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 2128421 39088557 ~ 39091895 (-)
AMCG00008076 NA other upstream 176718 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 617860 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 854401 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 1130827 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1531931 42761004 ~ 42764654 (-)

Expression


Co-expression Network