AMCG00008076


Basic Information

Item Value
gene id AMCG00008076
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41405791 ~ 41412224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008076
CACCAAACATGTCTACGGCGACCGAGAAGGACACATGTTTGCCCCAGACCGGGACAGATGTGTCCCGGGCGGAGATGAAAAGTATGTCCCCCCAGCAAAACCCAGAACCGGGCCAGGCGGCGCTCCAGTCCGCTCTGAGGTCGAGGCAGAGGGCCGGGCACCGGGAGAGTCTCCTCGACCCGGAGGCAGAGAAGCACAAGCGCAGGCAGGACGCGCTGGTCGGTCAGATGAAGGCCGCAGAGGCGCGGAGTAGAGTGCGACTGATGAGACTGCGGTACCAAAGCATGAGATCCCAGGAAATAAAACACCTGATCTCCTGCCAGCCAACGGGACAGAGAGCGGTGCGGCTGGAGCTGCTGCTACCAGTCAAAACCGAGAGATTCAGCCCTGTGAATGCTTTAGATAAACGT
>TU35443
GTGTTGGTAAACTGCGAGGATGATGCGTCTGCCGCCTAGAAGAGCAACGTGTCGAGACCCAAACAAGAGCAGCACATCCACATTACAAATAGTCTTTGTGTGAAGTCCCAGGAAATAAAACACCTGATCTCCTGCCAGCCAACGGGACAGAGAGCGGTGCGGCTGGAGCTGCTGCTACCAGTCAAAACCGAGAGATTCAGCCCTGTGAATGCTTTAGATAAACGTGAGAGGAGAAGAATTGAAGAGATTCTGGAAGACGACAGGGGACTGACAATAAATCGAACATGAAATCCATTGAAGTGCCTTTGTGTTGTAATTAGTCACTGTTGGGCCACATGCTTGACCAAGTGGAGTTCACAAACTGCATACAAATTGGAATTGTTCCGAGGTAAATAAAGACAGTGCACCAGTCTGCTGTTAATTACCAGTCCTCTGTTCCAGGCTTGACAATACCTGTATCAACAACATGCTACACAAAGGCATTCGAAAGAGCAACACTGTCATacatataattgtgttttcaacTACTCTGTTTTTACATTGGTTTTAAGaaaagtgttgttgttttttgtacgAAACTAAAAGAATGAAAGACTTCAAAAGCCATACTGTTGTGATTATAAGATATGCacataaacaaatgtgaaaacatcCTTTCTCTTGACATTCTATCTGTACcactgttttgaaaaataaaatagcaaacaAGCTGTGGT

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0000226 microtubule cytoskeleton organization biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008076 False 410 mRNA 0.60 2 41410935 41411821
TU35443 True 716 lncRNA 0.41 3 41405791 41412224

Neighbor

gene id symbol gene type direction distance location
AMCG00008075 LOC108275976 coding downstream 27374 41368688 ~ 41378417 (-)
AMCG00008073 NA coding downstream 66103 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 95231 41310009 ~ 41310560 (-)
AMCG00008071 NA coding downstream 157629 41240156 ~ 41248162 (-)
AMCG00008072 LOC106566342 coding downstream 176718 41220316 ~ 41229073 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding upstream 180430 41592654 ~ 41593613 (-)
AMCG00008079 NA coding upstream 181578 41593802 ~ 41758872 (-)
AMCG00008086 NA coding upstream 438984 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 513621 41925845 ~ 41943588 (-)
AMCG00008091 NA coding upstream 565463 41977687 ~ 41997684 (-)
G28309 NA non-coding downstream 39175 41364762 ~ 41366616 (-)
G28308 NA non-coding downstream 45323 41360144 ~ 41360468 (-)
G28241 NA non-coding downstream 276163 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 361744 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 386369 41018244 ~ 41019422 (-)
G28325 NA non-coding upstream 215137 41627361 ~ 41627752 (-)
G28361 NA non-coding upstream 395554 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 414218 41826442 ~ 41826766 (-)
G28377 NA non-coding upstream 430578 41842802 ~ 41843152 (-)
G28378 NA non-coding upstream 432732 41844956 ~ 41845987 (-)
AMCG00008069 rps21 other downstream 203966 41199489 ~ 41201825 (-)
G28202 NA other downstream 388543 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1117217 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1901199 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 2313896 39088557 ~ 39091895 (-)
AMCG00008085 NA other upstream 434709 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 671250 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 947676 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1348780 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1684887 43097111 ~ 43120164 (-)

Expression


Co-expression Network