AMCG00008078 (npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229)


Basic Information

Item Value
gene id AMCG00008078
gene name npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41592654 ~ 41593613 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008078
ATGGACTTAGACTATAGCACCAACCGGACAGATTTAAACTGCACTGTACCTGGACCGGTCTTTTACCCCGATTTCTATGTGGTCCTGCCGGTGATTTACTCTGTGATCTGCGCGGTGGGGCTCACAGGTAACACCGCAGTCATCTATGTCATCCTCAAAGCCCCCAAAATGAAGACGGTGACGAACATGTTCATTCTCAACCTGGCGATCGCCGACGATCTCTTCACCCTTGTCCTGCCCATCAACATCGCCGAGCACCTTCTGCATTACTGGCCTTTCGGGGAGGTCCTGTGCAAAATCATCCTGTCCATTGACCACTACAATATCTTTTCCAGCATCTACTTCCTCACGGTGATGAGCATCGACCGCTACCTGGTAGTCCTGGCCACGGTGAGGTCCAAGAGGATGCCCCACCGCACCTACAGGGCGGCCAAAATAGTCAGCCTGTGCGTCTGGGTGCTGGTCATCCTCATTGTCATGCCTTTCACCTTGTTTGCGGGAGTTTACACTGATGACATGGAGAGGAAAAGTTGTGCCTTGAGCTTCCCCAGCCCAGAGAGCCTTTGGTTCAAAGCCAGCCGGATTTACACCCTCCTCCTGGGCTTTGCCATCCCAGTATCGACCATTTGTATCCTCTACACCATGATGCTGTACAAACTGAGAAACATGCGCCTGAACTCCAACGCGAAAGCCCTGGACAAAGCCAAGAAGAAAGTGACTATCATGGTCTTCATCGTCTTGGCCGTGTGCTTGTTCTGCTGGACGCCTTTCCACCTGAGCACCATCGTCGCCCTCACCACCGACCTGAGGACCACTCCTCTGGTGATTGGCATCTCGTATTTCATCACCAGCCTGAGCTACGCCAACTCTTGTCTCAATCCGTTCCTGTACGCGTTTCTGGATGACAGTTTCCGAAAAGCTTTCAAGAAGATGCTGGAGTGCCGACCTGCGGGAATGTAA

Function

symbol description
npbwr2 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: neuropeptides B/W receptor type 2

GO: NA

KEGG:

id description
K08377 NPBWR2; neuropeptides B/W receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008078 True 960 mRNA 0.53 1 41592654 41593613

Neighbor

gene id symbol gene type direction distance location
AMCG00008075 LOC108275976 coding downstream 214237 41368688 ~ 41378417 (-)
AMCG00008073 NA coding downstream 252966 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 282094 41310009 ~ 41310560 (-)
AMCG00008071 NA coding downstream 344492 41240156 ~ 41248162 (-)
AMCG00008072 LOC106566342 coding downstream 363581 41220316 ~ 41229073 (-)
AMCG00008079 NA coding upstream 189 41593802 ~ 41758872 (-)
AMCG00008086 NA coding upstream 257595 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 332232 41925845 ~ 41943588 (-)
AMCG00008091 NA coding upstream 384074 41977687 ~ 41997684 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding upstream 656033 42249646 ~ 42267791 (-)
G28309 NA non-coding downstream 226038 41364762 ~ 41366616 (-)
G28308 NA non-coding downstream 232186 41360144 ~ 41360468 (-)
G28241 NA non-coding downstream 463026 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 548607 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 573232 41018244 ~ 41019422 (-)
G28325 NA non-coding upstream 33748 41627361 ~ 41627752 (-)
G28361 NA non-coding upstream 214165 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 232829 41826442 ~ 41826766 (-)
G28377 NA non-coding upstream 249189 41842802 ~ 41843152 (-)
G28378 NA non-coding upstream 251343 41844956 ~ 41845987 (-)
AMCG00008076 NA other downstream 180430 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 390829 41199489 ~ 41201825 (-)
G28202 NA other downstream 575406 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1304080 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 2088062 39500321 ~ 39504592 (-)
AMCG00008085 NA other upstream 253320 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 489861 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 766287 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1167391 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1503498 43097111 ~ 43120164 (-)

Expression


Co-expression Network