AMCG00008079


Basic Information

Item Value
gene id AMCG00008079
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41593802 ~ 41758872 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008079
ATGGAGTCACTACCGGTATACTGCGCCCGTAATAGACCCCCAAAAAAGGCCTCGTTTCTCAGCGATCTTGGCACTGTCGGCAAAGCACTGAAAAGAGAAGTCATGAAAAGTTTGTTTGATTACGCACCGAGAAAAGTTCCACACAGCTTCATTCTTGCGAGTTCTTgtgcaccaccaccaccaacagcTGAGAAGTTACTTCATTCCTTGAAAAAGTTGCTGCCAAGAGGATACAACTTATCAGCCAGGGGGGCCAGTGGCTGCTCCCGGCCAACCCAATCAGAGGCAGCAGGGCAGAAAGGAGTCCAAAAGGAATTCCATGTTACTTTGCTTGATGGCCGGGCCTACAAACCCAGCACAATCCTCCCTGCCTCCTCCTACCCAACCccctacagcagcagcagcagcaggctggAAGGACAGAAGAGTTCACCCATGCAGTTACTCAGGGAAATCGCTAAAACTCCCTTCACAGCAACCCTCTCTATTGGTGTCTTGCCCACAGAACTCAGCAGGGAGGATAGATCAGAGGATCGAAAGACAGGATCAAAGACCATGAAGAGCATGTTAACTCCCCTTCAAGACCGTCAGAagaCGCTGCAGTGCTCTTCTCCTGTAAAGCAATCTATTCTCAGAGTGAGCCCAGTGGAAGGAAGAGAGATACACCACATCACTCAGGGCTACTATGGTATCTCTGAGATGTCCCGCGAGCTCCTGGGGAGGAAGGGGGTGCTGACGGACTTTGTGGCTGTGTGCGCAGAGTCTGACATCCCCTTAGAAAAGCTAAGAAAGCTACGGCTGTTTCTAGTGAAGCATTGCAAACAGGGAGGAGCATTGCCCGAAAATGAGAGCAGCCTCCGTCAAACTCACCTGCCCCGTGTGTTTGACCAACATATGACTGCTGTACTACAGAAGATCCGTGGGAAGAAGTTTGCGGTGGATCTTGACGAGACAACAGATGCAAGGGATTGCAGCATTCTAAACATCGTCATTGGTGTTGAAAACCAGTACTTTCTGGTGGATGTCATTTACATGGACAGATGCAACTACTCACTCAACCTCCACAGCAACGATCTGAACCTAAATGATGCCTGGGCAGTGGTCACAGATAATGCCTCCTACTGCCTGAAGGCACACAATGAGATTCTGAAAGGAGTGATGCCCAACAGTGTACGTGTAATCTGTCTCTGCCATGTCATTCATCTGGTGGGTGAGACCTGGCAACACTACAAATACTTCTCTGTGACATGGATGAGATCTGTCTTCAAGAAGCCTGCCAGAAAAAGAAGATGGGTGAGCTTCCTCATTATAAAGGAGTTTGTGCAGGCCAAGGCTCCTCCTGAAGCAGTGAGCTCCAGATGGAACAGCTGGTTTGAGGCAGTGAAGTACCATGCAGAGCATGTTCATCTGTACAGAGAGTTTTTGTCAGCAGAAAAGTCATCATCCCAGGCAGTCACAAACATCCTCAGCCAGCTGGAAACAGAAGAGAAGGTGCAGGTCCTCACTGTTAAGCTAACCTTCATCTTGGAGGGCTGCTCCAAACTGATCCCACCGTCTCACAGCAATGTTTTATCAAAGCACTGGGACACACATCCAGCCAGAGAGGTCTACAGGCTGGCTAGGGTGTTCGATCCTAGGCAGGCTCCAGCCATGGAAAAGCAGATTGAAGCCTACACACAACTGAAACCCATGGCAAGCCCATCAATAGAGCTCAGTGAAGAATGGATTGCCTATCAGCACTGTGTGTCCAGGGAGTCCTCACCTGCTTTGGAGCTTGCTGATTACTGGAGGGACCTGAGTGCCAGATTCCCAAGAGTTGCAGAATATAACCCAGAAATCAGACTCCAATCACTTGTGACAGAAGCACGATACAGTGAAcagcaggcagagggtacactAAACATGAACTCAGAAACTGGAGAGTCCATGAAAGCTGACAGAGGGGGATGGGCGAGCGTCACCTCTCGAGGGTTCATCCTGCAGTCACCCCTGAGCCAGAACGATAACCTAGTTGCTCCTGTCGACATTGCAGATTTGAATGCAGGGGAGACGCTGAGATGTGCAAACCCCAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008079 True 2076 mRNA 0.50 14 41593802 41758872

Neighbor

gene id symbol gene type direction distance location
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding downstream 189 41592654 ~ 41593613 (-)
AMCG00008075 LOC108275976 coding downstream 215385 41368688 ~ 41378417 (-)
AMCG00008073 NA coding downstream 254114 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 283242 41310009 ~ 41310560 (-)
AMCG00008071 NA coding downstream 345640 41240156 ~ 41248162 (-)
AMCG00008086 NA coding upstream 92336 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 166973 41925845 ~ 41943588 (-)
AMCG00008091 NA coding upstream 218815 41977687 ~ 41997684 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding upstream 490774 42249646 ~ 42267791 (-)
AMCG00008101 NA coding upstream 536570 42295442 ~ 42299333 (-)
G28309 NA non-coding downstream 227186 41364762 ~ 41366616 (-)
G28308 NA non-coding downstream 233334 41360144 ~ 41360468 (-)
G28241 NA non-coding downstream 464174 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 549755 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 574380 41018244 ~ 41019422 (-)
G28361 NA non-coding upstream 48906 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 67570 41826442 ~ 41826766 (-)
G28377 NA non-coding upstream 83930 41842802 ~ 41843152 (-)
G28378 NA non-coding upstream 86084 41844956 ~ 41845987 (-)
G28410 NA non-coding upstream 332585 42091457 ~ 42092198 (-)
AMCG00008076 NA other downstream 181578 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 391977 41199489 ~ 41201825 (-)
G28202 NA other downstream 576554 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1305228 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 2089210 39500321 ~ 39504592 (-)
AMCG00008085 NA other upstream 88061 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 324602 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 601028 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1002132 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1338239 43097111 ~ 43120164 (-)

Expression


Co-expression Network