AMCG00008080 (pcmtd2,LOC102294427,LOC108440950,LOC103371493)


Basic Information

Item Value
gene id AMCG00008080
gene name pcmtd2,LOC102294427,LOC108440950,LOC103371493
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41800249 ~ 41812742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008080
aaaaaaaactcacaaacacagagaaaaccAAACAGACGACGAGACTGCAGCTGAAACCAAGAAATCATCTCCCCAACCGCGCCGAAGCCGACCTCGGTGACAGCGGCCGAGCATTTGCAGAGCTCCGCCGTGGGGAGAGACTTCTTTGTTCGCGGCTGCTGtcgtgcactttttttttttttttttggtattgttgTCCAGTGCAGCTGTTCCCGCTGTCGCACACCAGACCCAGTGCCGTGCCTGCATCCTGATAGGCCGAGCTCAACGAGTTGAAGATGGGCGGAGCAGTGAGCGCCGGGGAGGACAACGACGAGTTAATCGACAACCTGAAGGAGGCCCATTACATCCGCTCTGAGCTGGTGGAGCAGGCCTTCAGGGCCATCGACCGCGCTGACTATTACCTGGAGGAGTTCAGGGACAATGCCTATAAGGACCTGGCATGGAGGCACGGGAATATCCACCTCTCCGCTCCGTGCATCTACTCCGAGGTCATGGAAGCCTTGGACCTGCAACCGGGCCTGTCCTTCCTCAATCTGGGCAGCGGGACGGGATACCTCAGCACCATGGTTGGCCTGATACTAGGCCCATTTGGAGTAAATCACGGGGTGGAGCTACATGCAGACGTGATTGAGTATGCCTATCAGAAGCTGGATTTTTTCATCAAAACTAGTGACAGCTTTGATAaGTTTGAGTTCTGCGAGCCGTCGTTCGTGGTGGGGAATTGCCTCGAAATCACTCCCGAGACCCGCCAGTATGACCGGGTGTACTGCGGGGCAGGAGTGCAGAAGGAGCATGAGGACTACATGAGGAATCTGCTGAAGGTCGGAGGAATTCTGGTCTTGCCATTGGAGGAGAAGCTAACCAAGATCACCCGCACCGGATACAACACATGGGAAACTAAGAAGATCATTGCGGTCTCCTTTGCCCCACTTGTACAGCCTAAGAACCGAGATAACGGAAAATCCAAAGTAGTCCCGCTCCCTATGTTCGAAGTGCGGACGCTGCAGGACCTGGCGCGCATTTCCATCCGCCACACCCTGAAGAAGATCATCAACCAAGACAAGGCGAAGAGTGGCGGCGCGGCCAAGAGCGGCCCCCGCTTCAAACGCAGGCGAGTGCACCGGCGCCGCGTGGACTCCGTCCTCTTGACCAACAAGCACGTCTTCGTGAGCCGCATGATCCCCAACCCCATGgacgacaacaacaactgcGACGAGATAGAGGAGGAGCGGGCcgaggaggacgaggacgaggaggagagggagcaggGCGACCTGAAGCCCGAGCCGCCCATCAACTTGCTGAGGGAGAAAATCTTGAGCCTCCCTTTGCCCGAACCCCTTAAAATGTACTTGCTGTATTACAGGGAAAAATAGAAGAGGTTGTGTTGAAGTGGTCGCCGCCTATCAATCTAGTCTAGCTaagcagaaatacaaaatcttcCCCTGTAGGCAATCCAGGGCCCAGCTAACTGTTGTCTGTCCTTTATTTTTCCAGGGGCCTATTTTTATAAAGAGCAGGAGAATTTGCTGACCGTAAAGGGGTTATTTTCTTTGGTAGACCAAAATCCTTTCCCTACACTTTCATGTTCCCAGTGTAGTTATTCTCAGAGGCCTGCATTTATGTTGTCAGTTCTGTTGTTTGGTCTCCCAAGCATTTCCTCCTCTAAGCGGCCTGTCGAAGGTGAAGGAAGCAGCCGGGTCTTCGAAGTGTAAGGGAGAGGCACAGAAGCTTCATTGTCATTTTGAAGTCGAACgaaatcaaagaaagaaagcaacGACTCCTGTGCGTGGGACCTGCTGTATTGCTCGGTATCCTGGGATATTGTAatgccatttcatttcatttgtgtttccAAACTATAAACTGTGTCTACATAGGGAGGTCTCTTGATCACCAGCACCAAGTATTTTAAAGAGGACCTTTCTTTGTAGAATTGATAGTCTGTCTGTTAATGATGTATTACTGGTCATTagtttgctaaaaaaaaataataataatggcattaATAAGGGAACAAAAGAGCAaacgttttctttttctttttttcattcctcAAATTCGTTTTTAAAAACCATTAGGGTGGAGTGCTGCTTTACACAGTAGAtcacagacaaaagaaaaagcccCCTGAGGTTGatctttaaaatagtttaaattgtTCTTACTTTCTTGATATTTCTAAGCAGTGTCCAAAAGAAGAATGCTTTGAAAAGATGTCAAAAACCCAGCGACTCTCTGTGGTTTTCCTGTTGTGAAAGCAGAGGGTAAGGTGTCAACATAAggtcatatatatttaaacagctgtgtattcaaatattaaatatgaagtaCTGTACTTAATCACTGTACAATTTGTAGCAATATAGTCCTTTCGTGGCTAAAATAGCACATTACAGACTGGGTACGTGCAGTCCTGGTAACCAGATAGTCACAAGTTGCTATTAATCCCCAAAGGTAAGTGTCCCCACGAGGGAAGTAGGGGTCGAACCCTTATTTTGATGCATGCTGATGTATGTGACCTTGTAACAACAGTCATcgctgagcaaactgctcctgAGACAAGTCTCCTCAGCTTCAGAATCTGGTTCACAGCTGTAGCTTCTCGACGAGTGTCTGACGAGACAGTGAGGACATGTCCTGTGTCCAACCTCATCTTGTTTAGTTAGTTTGCAGTGATGGGCGATGTAACCTAGCGCTGCCCGCTTGGTAGAGAAACAAGAAAACCTTGTTTCCAAGTGAAGCATTAGTATGCTGCCAGGGTCATTCACATTTTATCTGCTCTCCCAGTAAGCGTTTTTCTAcgctttttttaattaagagaaaGGTTTGGAGTTTGTGATGCATGGGTAGAGAAGAGAAGGTTACCGGGCGTAAGGGGAAGCACTGCTTCCCGAAATGTAGTTCCTTACCTAGAAACGACTTGATATtcagtatatttttttgtggaTAAATGGAGTGCTCCAGAGTCTCACGCCATCTTCACAATTTAAAGTGCCTCTTCAGTGTCTCAAAGAATTGCAAGTATTGGCCTTCTTTCTGAAAAGGGGGAGTACGTTGCATAACCTTTCTGTGATTAATGTCATTAAAGTCCCGTAAATGGTTTCAGAGCTTACAAtcgcttaaaaaaacaaaaacaaaatgtttaatggtCACCTTCAAGGGTGCCACGTGGTAAGTCGAAAGGTGATCTCACGGAAGAAAGAGAGGTTTATTCTGTGAGCTTTAAAAAATGAGGTTTTATTGATACGGATTGAAGGACTCGTAAATAATTCAGCTGTGTGTGGTAATGATGTTATGGAGATGTTCCTATGAAGTAGTTCTCTTTCTATATAGCCAGAGTTTTATCTATTGGAATTGCTCTATGTATTTATCagtaataaatattgaaaaaagaaaagcaaaaaaaaaaaaaaagtatttaatatttgtgttgaaGGATATGCTTATGACTATACAGTGTGGTGTTATTTATATCTTTTTCTCTCTATATACCTTACAAAGATCGTACGGATGtgtacatttacaatacaaCAGAGAGGAGAAAAATTCTCACCCCCACAGGATACGTTACCAGCACTTTGAGTCTACAATATACCatataactttatatatatatatatatatatatatatatatatatatgtatgtgatcTCTATATTCTTTAACCTTCTGTAACTGCTTAGCATATCGGTTTGATAGATCGCTCTATGCTGGGAGCGTAAAGCAAGTGGTATCTGTCTTGTGAAATGTGTAAGTGACATTTGCTGTATCCTAATAGGTGATGTGTTTCAGAGAAGTCGTTGCCGTCTGGAGCTATCATTATTAGCCCACGGAGGTGAAGAGGTCGCAGATCTTGCGCTCGGGGGTCGCAGGTTCGAGTCCCGGTTACATCCTGTTAGTGGAGTCCAAAAAGAGGAGTGCGTTTCAGATCAGCAAAGGTAAAGATgggattgattttgttttctaaacagACTGGCTAAGTAAGTGAAGACCTGCTGAGCCTAAATTAAGTCTCCTATCTTGTAGGACTATTGCAACATTTCTTTCCTCCTAGTCGGATCGTAAGACAGAAAGAGCAGCAGGGCAGACTGATTCTCTGTGATAGTAGGTCACCCTTCTGTGGACATCTTCAAGGCAAGCttcagtttaatatttcagATTAGTTGAGGGACTTTGCACAAATTCCACGTTTGTTCAGTTCCTTGTATTTATTAGTCCTTGTATCTCCAGTACATGTGCCTACGGTCTTTCAAGGATTCATGtggtttaaaaatcaatacataaatctGCTGTGGGTAATTTTGAACGCACAAAGACGAGGAGGCCTGGACGCACTGTACTGTGTAAATTCTGGTCTCAGACTGGGCTCATCAGACGAGAAGTAAGTTTGTGAATGTATTGGAGCTCTTCAGATGTACTACCTGGAATCAGAAATGCATCATTACAGCCTGAAAACTGGAGGCTGTTGATTGGGAACcacttttaacacattttctggGTATTTCAATAACCATttgcagtgatttttttttgtgtgctgatCTATGGAAggtaacattttgaaaaccacATTTCTTTTGCAGAGCAGTTTATAATCAAATACTTTGGAGGCAGGTTAGGGTAACCAGTTTCCCTGGTCATAGAACAGCATTTCCAGTATCATTGTAGTAGTTCTGAGGAATGCATATTTTATCAAAAGGCATCACGAAGCATACATAGTAAGAATTAATGATACTGATCCAGACTTCTGTGTGTTTCATTTGCAGAAAGCTTGCCtattgacatttttgttttcataaccCATAATGGTGATTCAAAGGTTTGTGCATTtaccatgtttttgttgttgttctttctttctaattttAGGTGAataattccatatatatatttgcatacatataaattaaatgtgatcTCTGATACTTGGAGGGTAGTTTAGCTGGGTAATTCTCCTTCCATTTTTGCTGTGATTCAATTTCGATGATGTGCCCTCAGAGACTCTGTAAAGCTGTATTCTCAGTGCCAAATGTACATTGCTTGAACCCTGCACTGCTTAAGGGATATTTCATGTAGAGCTTTCCTCTGATTGTAATGTATGTTTAAGGGTTTTCTaaggtttacatttttgcaATGTTAATGTTGTACTTTTTTGCACAGAAATCATGTAAGCAGGATGTTCTGATCTGAGGAAAAACATCATTGTTTTCAGTCTTGGCTGCAGTTAATAAAAATGACACCTAAATGTGCAATCAAACCCtcagctttccttttttccccgtTTGAATGTAACATTTCACAGAACTTAAACAAATCAGGAGTTTTCACCATATTCTGCATGATTTTCAAATACAGTCAAGAAGTTTCTCTGTGCATTCATATAATGCCAGATCACCAGCAACTAGAAATTAATTCCTGATGGGACTTGTGCAAAGAAGAAGATACATCTATTTAAGTAGAGTCCTTACTGCAGAAGCTTAAAGTATATTCAAAAGTCACTTGAAGGTATAATCTGCCCAGTCACCAAAATTGTGCCATTTCTACCCCAGCTTCTGTATTAGAGTTTGAAGCTAATGACTTTTAGCATTACCCCTTAGCTGATATCATGCATTGAGACAACTGTCACACAGAACCGATACCTGTCTGAGCATTGCACAGTCCCATATTTGCTCACTGAggtctgttttttcattttgcatggCTGCACAGTATTTATGGTTGGCCTACTTACAACTGTCAACAGCATTTGAACTCATCAAGATAGGCTACCCATGCACAGATCAAGACAATAGCCCTGATTCATTATGTTCTGTGAAAGGAACAACTagtagaagaaaagaaaaaaaatcttgtaaATCACACTGCGACTGTTTTCATAAATAGGAAGTGtggtgaaataataaaaatacattaaacaag

Function

symbol description
pcmtd2 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to be involved in protein methylation. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: protein-L-isoaspartate O-methyltransferase domain-containing protein 2

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008080 True 5926 mRNA 0.42 7 41800249 41812742

Neighbor

gene id symbol gene type direction distance location
AMCG00008081 LOC108440949,LOC107690850 coding upstream 10571 41769950 ~ 41789678 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding upstream 237060 41558420 ~ 41563189 (+)
AMCG00008070 NA coding upstream 443416 41350428 ~ 41356833 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding upstream 671375 41123903 ~ 41128874 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding upstream 681289 41111056 ~ 41118960 (+)
AMCG00008083 NA coding downstream 8926 41821668 ~ 41821994 (+)
AMCG00008084 NA coding downstream 13998 41826740 ~ 41832892 (+)
AMCG00008082 NA coding downstream 20520 41833262 ~ 41846010 (+)
AMCG00008090 zbtb24,LOC106676336 coding downstream 80147 41892889 ~ 41893875 (+)
AMCG00008088 NA coding downstream 95801 41908543 ~ 41915531 (+)
G28329 NA non-coding upstream 71816 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 104541 41695354 ~ 41695708 (+)
G28303 NA non-coding upstream 411465 41388583 ~ 41388784 (+)
G28301 NA non-coding upstream 421956 41378051 ~ 41378293 (+)
G28300 NA non-coding upstream 428428 41370866 ~ 41371821 (+)
G28332 NA non-coding downstream 34250 41846992 ~ 41936214 (+)
G28394 NA non-coding downstream 164517 41977259 ~ 41980084 (+)
G28416 NA non-coding downstream 294125 42106867 ~ 42110075 (+)
G28421 NA non-coding downstream 305179 42117921 ~ 42186382 (+)
G28511 NA non-coding downstream 687932 42500674 ~ 42500981 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1078504 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1553011 40241312 ~ 40247238 (+)
G27974 NA other upstream 1740863 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1965297 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 2254642 39540220 ~ 39545607 (+)
G28395 NA other downstream 180117 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 600890 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1292971 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1332063 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1479854 43292596 ~ 43305530 (+)

Expression


Co-expression Network