AMCG00008082


Basic Information

Item Value
gene id AMCG00008082
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41833262 ~ 41846010 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008082
AAAAGCACTGAATGTGACAGCCCGGCGGTGCCCTGCGCGTCCTGCTCTCCAGCACCTTAGAGCCGGGCGAAGTGGCACAACCAACCTATGAGTCCCGGCACGGGCAACTGCAGATCTATGGGTGAGACTTTCCGAAATAAATGCCCGTGGCTGTGTGGCCTGTGCACCCGGCTGTGTGGACATGAACAGACCGCCGGAGATGGTGCCGGAGACGTGGACCGAGAGATTAAGACCGCCAAGGCGCCCTTGACGCCGGAGGTAGGGCGCTATAACGCCCCGGTGCCGCCGGTGCCCCACAGTGAACCCATTTACACCGCGCTGTGGCCATTCCAGGCAAGAGCCTCCGAGGAACTGTCCTTTCAACCCGGGGAGCTTTTCACCATCCTGGACCACACGGGGGAATGGTGGACAGCGGCCAAGATTGATCCCAATGGCAGAGTTGTGGCTGAAGGATATGTGCCACGCAATTACCTGGCCAGGGGAGACACCTTGGAGGCGCAGCCgTGGTTTGTTGGGAAGATGAATCGTTTGGAAGCTGTAAACCAGGTCCTTTCAACCGAAACTGGAGATGGCACGTTCCTGGTGCGAGTCAGCGAAAGACAGAATATTGATTATGTGTTATCAGttaaatttgaaaacaaagtgaGACATTTCCAAGTACTGCAAAATGAAGACATGTTCTATTTAAACGACAAAAAGAGCTTTCCAACCCTGATGGACCTCATAGACTTCTACAGAATGCATTCCCTCCCTCATGTGGGGAAGCTAACTCATGGATGCTCAAAACAAGAACCTAAACCCAAGGACTTATCGCACTCAACTGTGGATGAGTGGGAACTGCCAAAGGAGGAGTTCACATTGTGTGAATTACTGGGGACTGGATATTTTGCAGATGTCTACCAGGGAATGTGGAAAAACCAAGTTAAAGTCGCTATAAAGgtcttaaaatgtaatgAGAGCATGGACTTCAAAGAGTTCCAGATGGAGACGCAGATCCTGAAGGGACTTCGCCACAAACACCTGATCTCCCTCTTGGCCATCTGCACGTCAGAGGAGCCCTTCTACATTGTCACAGAGCTGATGGAAAAGGGGAACTTACTTAACTTTCTAAGAGGTGACGAAGGGAAACAGCTGGACGTGGTGTCCCTTTTAGACATGGCCTCCCAGGTGGCTGATGGGATGTCCTATCTGGAATCCCAGAACAAGATTCACAGAGACCTGGCCGCCCGCAATGTCCTGGTCGGGGACAACCTCATCTGCAAGGTGGCCGATTTTGGATTGGCTCGAATCATAAAGGAGCCTTTTTACTTGTCCAATGACAAGAAAATCCCCTATAAATGGTGTGCTCCTGAGGCCATCAGCCACGGCTGCTTCTCTACCAAGTCAGACGTCTGGTCTTTCGGCATTCTTCTGTATGAGATCCTCACCTATGGAGGCGTGCCGTATCCAGggTACCACAACAGTGAGATGTACGCCCTCGTAAGCGGGGAATACCGGTTGCCACGTCCGGAAAGATGCCCGCAATCTGCTTACAGGATCATGTTGGCCTGCTGGGATAAAATACCAGACAAACGTCCAGCTTTTAGGAGCCTCATGCAAAAGTTAGAGAACATCAATAAATACGAAATTAACTAGAGGTCAAACTCCTAGACTGTACACTTCCACAACCCTGGAGCCGCTGGAGAAAGAGATCTGAGATTTAAtggagaaaccagccaatcacggACTGCAGGAACTGGAGGAGGGCTATTGATCAAATCATAGTTCATTCCCCTGAAACTGTTCCTAAATGACCCGAAGGAGTCGCACCAGACAGCACAGCGTGGCCCGGAGTCATATCCTCCGAGTTAAAAACCCCGATCTTCAGCGCTCCTGGCTATATCCAtgtgttttaagttttttctGGATTAACACTATTCCATCTATAATTGTGGAAGGACAACAATCAAAATACTGTCTTATAATTGCTTAAAACCCCCAGATCTCAATCTTGTCATATATATTaaaccttttttatataaacagtgattttgttaattttgtaagTAAGATTATCTATGTTTTACATTGAAAGcctttgaaataaaaagcatCTTTCACACTTGAAACTGGCATTGCATTGCACTACCAATTTTAGGTAAtgtgatataaaatgtatataaataatatcacAGATTATGAAAGTTATGATAGTGTTTATCCCAGCCACGTATATAATGAAGTGCAATAATGTAACTAGTTTTTGTTGGATATGGGGATATCactatgctttaaaataaacaatgatatattgtaagaaaaaacaaagaccgtttaaacattttctatagAACTCAACAAGCTATATATAGAGAATTATTAATGCATACAAACTATTTctgaatgttatattttttaaactctgcAATTATGTAACAACTTTGTAAGACATTGCATTTGTAGCTTTTGTTTCCATGTTCCCTGGATATTTTAAAGCCCACTGCTGACTAAAGGCAGTATTACCATACAAACTCGACTATTGAAACTGCTCTCATCCTTCACCACCAGAGGGACAGCTAAATGCACTATTAGTATTCATTTGAGGAATGTATCATTCAATGTTctgtcaacaacaacacaatgtgGATGTACGAGTTTAACAAGAAGAGCTCCTGAAATGAACTTACAGAGAGATTGACCGCTAGAGGGCGCTGCTTCACATGTTTTACATTGAAATCGGCGTGTGGCCCAGGACATACATACAGcTCAGACTCTTAAACAGAACTGCTATTGAAGCCCTCAGTTGAGGAGGGGTGTACGGCCTATTCTACTTTTCAGATCTGCTGTGCCTGaactgaaggaaaacaaatgaaagcaaaagcaacattgaaaggaaaatcaaaGCATCTGAAGAGTTGGACCTGATTTTCAGTGCCATGGCCACAGTCCCGTCTCCAGGATGCCTACTGGCAAGGAATCAGTTTTACAGAAGCCGAATCAACGCATCAGTCAGTCATTCCTCTGGTTGCTCTTTGCAGTCAAAGGGAGTGGAAGCCCAGAGTCTCTCCGTTCACCCAGGACTGTCTCCCGTGATGGACTGGTGCACGAGTGTGCTGTTAGGACACACCAGAGCGCACGCCGTCGCACACCAACCACCCAGCCCAGCAGAAGGTGTAACAAAGTAGGTGTAACTAACTAGCAACTACAGAAATCTACCTGGGGGAAGCCGCAGAGAAAGATTGTCTGCTCAGTTACTGTAAAGTGAGGTGTCTCAGCACTTCAgcagcaaaacaaagacatttattttcttttttgcctaGCAGGAGTGTACATCTCAAGAGAGACAGAGTTGTTCAAGGATagatgtttttgtctttcagaAAGGGGCAGCAGTCCAATCTCCCAACTGTTtacacaggttttttttttaaaaaaggccCATATCTGTGCACAGGCAGAATGTGGCAGATTGATTTCCTTTCAGAGCACGGCTGTTTGCATTAGATGTCCAATCACAAAGCTACAGGTCGCAGAGGATTTATGCTCCACAGATGTGTGTTGGAACAGAAGTGTCCAGTCAGCACAAAGCAGCCGTGCATGTCATGAAATGGAAACTTGGCACAATAGCTTGGCTGATTTGACATTTAGACGTGCCCCATTTAAGCTTGTTAGtggcacaaaacaaacattttaatttggaaacttgccacttttgtttggtttaaagaAAGTTGTAGCTGCAGCTCACaccaacaaattaaatgttacacaaaCAGCAAATGCAATGGTCTGACTAGTGTTGTTCACGGTGACTGGAAAATCTTTTCATAATGTTGTCCTTTTTGATCCTAAAACTAAGTGACGTGGTCTCCTTCACAAATGTGCAAATAGTCCTTGAATGAAACCCCATTGTTACTCGTGTTAATAGTTGTAAATATTCATCTGCTTACTGATTTATGTTGTGAAGTTACTGATGTAACCATGTGCAAGTCTAAGTGTAATTGCATCATGAAATGTTGTTCTAGTTTATAGATCTTTCAGAGCCTTTTGGTTTCAGTTGTTACCTGCTGTAGTTTAATCTGAAGTCCTGTACCAAACCAAATTGTTATCCAAAATAAAGGTTTATCTGGTTTGTA

Function

GO: NA

KEGG:

id description
K08894 PTK6, BRK; protein tyrosine kinase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008082 True 4115 mRNA 0.44 13 41833262 41846010

Neighbor

gene id symbol gene type direction distance location
AMCG00008084 NA coding upstream 370 41826740 ~ 41832892 (+)
AMCG00008083 NA coding upstream 11268 41821668 ~ 41821994 (+)
AMCG00008080 pcmtd2,LOC102294427,LOC108440950,LOC103371493 coding upstream 20520 41800249 ~ 41812742 (+)
AMCG00008081 LOC108440949,LOC107690850 coding upstream 43584 41769950 ~ 41789678 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding upstream 270073 41558420 ~ 41563189 (+)
AMCG00008090 zbtb24,LOC106676336 coding downstream 46879 41892889 ~ 41893875 (+)
AMCG00008088 NA coding downstream 62533 41908543 ~ 41915531 (+)
AMCG00008087 zbtb46 coding downstream 70696 41916706 ~ 41921311 (+)
AMCG00008093 LOC107724178,LOC107601334,LOC107696930,LOC108410586,LOC107594068 coding downstream 198794 42044804 ~ 42055393 (+)
AMCG00008094 NA coding downstream 225739 42071749 ~ 42072173 (+)
G28329 NA non-coding upstream 104829 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 137554 41695354 ~ 41695708 (+)
G28303 NA non-coding upstream 444478 41388583 ~ 41388784 (+)
G28301 NA non-coding upstream 454969 41378051 ~ 41378293 (+)
G28300 NA non-coding upstream 461441 41370866 ~ 41371821 (+)
G28332 NA non-coding downstream 982 41846992 ~ 41936214 (+)
G28394 NA non-coding downstream 131249 41977259 ~ 41980084 (+)
G28416 NA non-coding downstream 260857 42106867 ~ 42110075 (+)
G28421 NA non-coding downstream 271911 42117921 ~ 42186382 (+)
G28511 NA non-coding downstream 654664 42500674 ~ 42500981 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1111517 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1586024 40241312 ~ 40247238 (+)
G27974 NA other upstream 1773876 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1998310 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 2287655 39540220 ~ 39545607 (+)
G28395 NA other downstream 146849 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 567622 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1259703 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1298795 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1446586 43292596 ~ 43305530 (+)

Expression


Co-expression Network