AMCG00008085


Basic Information

Item Value
gene id AMCG00008085
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41846933 ~ 41849954 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008085
AGACCCCGCCTCCGCCAACGTAAGCGTGACGTCACCTCTCACGACGGCCGAGTATATATAGAGCGACGCGAAGGCTCTCGCCGCAGACGGACTGTTGCAGTTGGTGATTGTCTAGGACGGAGGGTTTTAcccaaaattattatttccaaTGGGCCCCGTTGCCTAGCGTTTACTTTCCTGAGCCTTGCCCGCCTGAGGTATTGACTGTTGTTTGGGTGCAAGATCTGCACGACCACAGGATTGAGAATCGGCTTGGTCCCATATAGTATGAATTTCACCATTCATCACAGCAGTATACCCAGACGTGTCACTTCCCAGGCAGCGAGCAGTTAGTTGTGCGTTTTAAGAGTTGGCAGTCCTGTGGCCCGTCTGTCTTGAGTGGAACCCGAACCCGATCGCCAGTTGTTCCTGTAACCTCACACTGTCCTTTAACTGCGAATGCCTGCTCTGCATACTTTTGCAACATGCCCTGATGCGGTTTCAACACATGGTTTCCATCTAAGAACGGAAGAATGGCTGCAATTCCATCAAGTGGCTCGCTTATCGCAACTCATGACTACTACAGGAGGCGCATAGGTTCCACCTCAAGTAACAGCTCCTGTGGAAGCTCAGAGTACTCTGGGGAGGTCATTCCACACCATCCAGGTTTGCCAAAGCAGGATCCTGGACACTGGTGGTCGAGTTTCTTCTTTGGGAAACCAAACCAGCCAGCTATGACCACACTGACTGAATCTCCTCAGAACATGACCAATGGGAAGGTGACCTGTGGGCTGGCTCAGGAAGTGATGGAGCGCCGGCTCAGCGAGGCGGCAGAGCCGGGCAAGCCGGAGGCCGGGAGCTCGTCCTGA
>TU35536
GACGCGAAGGCTCTCGCCGCAGACGGACTGTTGCAGTTGGTGATTGTCTAGGACGGAGGGTTTTAcccaaaattattatttccaaTGGGCCCCGTTGCCTAGCGTTTACTTTCCTGAGCCTTGCCCGCCTGAGGTATTGACTGTTGTTTGGGTGCAAGATCTGCACGACCACAGGATTGAGAATCGGCTTGGTCCCATATAGTATGAATTTCACCATTCATCACAGCAGTATACCCAGACGTGTCACTTCCCAGGCAGCGAGCAGTTAGTTGTGCGTTTTAAGAGGGTTTCCATCTAAGAACGGAAGAATGGCTGCAATTCCATCAAGTGGCTCGCTTATCGCAACTCATGACTACTACAGGAGGCGCATAGGTTCCACCTCAAGTAACAGCTCCTGTGGAAGCTCAGAGTACTCTGGGGAGGTCATTCCACACCATCCAGGTTTGCCAAAGCAGGATCCTGGACACTGGTGGTCGAGTTTCTTCTTTGGGAAACCAAACCAGCCAGCTATGACCACACTGACTGAATCTCCTCAGAACTCTGGGACGTTCAGCATGACCAATGGGAAGGTGACCTGTGGGCTGGCTCAGGAAGTGATGGAGCGCCGGCTCAGCGAGGCGGCAGAGCCGGGCAAGCCGGAGGCCGGGAGCTCGTCCTGAGTCCCGGGCCGGGCTGAACCACGCTAGGAGATGAGGGCGCccctttttacctttttaaaaaggctgctttagatttttttaactttcttgccaaataaaaaaacaaaactacaaaaaaaaaaaaactacttttctGTTCACGTCTAACATGCTATTGTGAACGAGCCTTTTccatctttgtgtttttaaataaagtagcCTTAAGCAGCCTATCTACCTTGTCTGACTTTTCTTTAATGCTGAAAAACTTATTTTTGATCCTTTTGTTGTTGAAC

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008085 False 848 mRNA 0.53 7 41847208 41849954
TU35536 True 934 TUCP 0.48 6 41846933 41849890

Neighbor

gene id symbol gene type direction distance location
AMCG00008079 NA coding downstream 88061 41593802 ~ 41758872 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding downstream 253320 41592654 ~ 41593613 (-)
AMCG00008075 LOC108275976 coding downstream 468516 41368688 ~ 41378417 (-)
AMCG00008073 NA coding downstream 507245 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 536373 41310009 ~ 41310560 (-)
AMCG00008086 NA coding upstream 1254 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 75891 41925845 ~ 41943588 (-)
AMCG00008091 NA coding upstream 127733 41977687 ~ 41997684 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding upstream 399692 42249646 ~ 42267791 (-)
AMCG00008101 NA coding upstream 445488 42295442 ~ 42299333 (-)
G28378 NA non-coding downstream 946 41844956 ~ 41845987 (-)
G28377 NA non-coding downstream 3781 41842802 ~ 41843152 (-)
G28366 NA non-coding downstream 20167 41826442 ~ 41826766 (-)
G28361 NA non-coding downstream 34859 41807778 ~ 41812074 (-)
G28325 NA non-coding downstream 219181 41627361 ~ 41627752 (-)
G28410 NA non-coding upstream 241503 42091457 ~ 42092198 (-)
G28446 NA non-coding upstream 434005 42283959 ~ 42290245 (-)
G28456 NA non-coding upstream 451323 42301277 ~ 42302097 (-)
G28509 NA non-coding upstream 625766 42475720 ~ 42476990 (-)
G28512 NA non-coding upstream 650723 42500677 ~ 42500996 (-)
AMCG00008076 NA other downstream 434709 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 645108 41199489 ~ 41201825 (-)
G28202 NA other downstream 829685 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1558359 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 2342341 39500321 ~ 39504592 (-)
AMCG00008095 NA other upstream 233520 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 509946 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 911050 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1247157 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 1660806 43510760 ~ 43583413 (-)

Expression


Co-expression Network