AMCG00008087 (zbtb46)


Basic Information

Item Value
gene id AMCG00008087
gene name zbtb46
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41916706 ~ 41921311 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008087
ATGCGACGGCTTTGTGTGCGTTTCCTCTTGTCTGTGCTTGCAGTGAACGAGTTCACCGTGATCAGGAAGAAGTTCAAGTGCCCGTACTGCAGCTTCTCCGCCATGCACCAGTGCATCCTGAAGCGACACATGCGCTCCCACACCGGAGAGCGGCCCTACCCCTGCGAGATCTGCGGCAAGAAGTTCACTCGCCGAGAGCACATGAAGAGACACACGCTGGTGCACAGTAAGGATAAGAAGTACGTGTGCAAGGTTTGCAGTCGGGTCTTCATGTCCGCCGCCAGCGTGGGGATCAAGCACGGCTCCCGGCGCCACGGCGTCTGTGCCGACTGCTCGGGCCGAGGGATGGCCGCAGTACTGGACCAGAACGGGGGAGAGGGCTCCCCCGAGGACGAGCTCTACCCCGGGGAGAACCAGTTCACCGACGACCCCGACGACCTCAAGGTGGAGGGGGACGAGGAGATGGCGGACGGCGAGGGGGAGGGCGAGGGGGAGGGAGACGACGACGTCAAGTGGAAAGACGACTCAGGAATGTCCCAACAGGATGTCATTTTAGACGACGAGAAAGAGGAGAGCGACTCTGCACAAGAAGCCGAAAACCAGGGCGGGAGCGACAAAGATTTTGCCTGGATTTCTTAg

Function

symbol description
zbtb46 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB46 (zinc finger and BTB domain containing 46).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 46

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008087 True 639 mRNA 0.60 3 41916706 41921311

Neighbor

gene id symbol gene type direction distance location
AMCG00008088 NA coding upstream 1175 41908543 ~ 41915531 (+)
AMCG00008090 zbtb24,LOC106676336 coding upstream 22831 41892889 ~ 41893875 (+)
AMCG00008082 NA coding upstream 70696 41833262 ~ 41846010 (+)
AMCG00008084 NA coding upstream 83814 41826740 ~ 41832892 (+)
AMCG00008083 NA coding upstream 94712 41821668 ~ 41821994 (+)
AMCG00008093 LOC107724178,LOC107601334,LOC107696930,LOC108410586,LOC107594068 coding downstream 123493 42044804 ~ 42055393 (+)
AMCG00008094 NA coding downstream 150438 42071749 ~ 42072173 (+)
AMCG00008092 ythdf1,LOC108437571,LOC107668064,LOC107549989,LOC107549491,LOC107678560 coding downstream 170246 42091557 ~ 42100380 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding downstream 291061 42212372 ~ 42213085 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding downstream 358458 42279769 ~ 42289436 (+)
G28329 NA non-coding upstream 188273 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 220998 41695354 ~ 41695708 (+)
G28303 NA non-coding upstream 527922 41388583 ~ 41388784 (+)
G28301 NA non-coding upstream 538413 41378051 ~ 41378293 (+)
G28300 NA non-coding upstream 544885 41370866 ~ 41371821 (+)
G28394 NA non-coding downstream 55948 41977259 ~ 41980084 (+)
G28416 NA non-coding downstream 185556 42106867 ~ 42110075 (+)
G28421 NA non-coding downstream 196610 42117921 ~ 42186382 (+)
G28511 NA non-coding downstream 579363 42500674 ~ 42500981 (+)
G28527 NA non-coding downstream 662921 42584232 ~ 42586668 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1194961 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1669468 40241312 ~ 40247238 (+)
G27974 NA other upstream 1857320 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 2081754 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 2371099 39540220 ~ 39545607 (+)
G28395 NA other downstream 71548 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 492321 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1184402 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1223494 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1371285 43292596 ~ 43305530 (+)

Expression


Co-expression Network