AMCG00008088


Basic Information

Item Value
gene id AMCG00008088
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41908543 ~ 41915531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008088
ATGGAGCCAAACAGCTCAGACAGCCGAGGGGATAGATTGGATTTCTTTGTGAAGCAGGAGGAGAGTTTGGTGGGCGACTCCAGCTACCTGCTCCAGCCGCTGGGCTCTGAGAAAGAGGACTCCTCGAGTCAGGCAACATCCGTGGCGAATCTCCGGGCTGCACTTATGAGCAAAAACAGCTTGCTGTCCCTGCGAGCAGAAATGCTGGGAGAGGACAACCCTCTGCTATTCGACTACTTGCCCAAAGGTGGACATTCGTTGTCTCGGCCTGGCTCCTCCAACTGCTCCTCGAATCGTCCAGGGGGCAAATTTGATAGCAAACAAGGGGCGTCCTCTCCTCCACCCCTGCACCCCTCTGATCGGAGGCCCTCTGGCCCCTCCAATCTTCAGTCTGGGGATCTTATACCAGAAAGACTgatagaggaggaggaggattcTGACTCTTCTCCCATTCAGGTCAAGACTCTCTGTGATGAAGATGTGCAGGCCTTTGAAGCAGGCTTGGATCCCAGCCATCACTCACGGACAGAAGATCAGATGTCCGACGCCGATAGCGGCCGTAATGAAACGGAGCTGTTTCTCGGTGCCGCCCGCTGGCCCCCGGAGCTGCTGTGCTCTCTATGCAAACGCTCCTTCTCCAGCGCCGAGAAGCTCAAGGAGCACGAATACCAGCACACCCTGATGATGGCTCTGTCTCTGGACTGTTTCGAGATTGCCAGGCCCCTGGTCCCCGGACTGGCGGGCTTCCTGGCGCCGGAGCCCCCCGTGCGCTACTTCTGCTCCCAGTGCCCGGCCAGCTTCACCCTCAAGTCCAACGCCGACCGGCACGAGAAGACCATCCACTTCAAGCGCAAGATGATGCAGTGCGGCTACTGCCTCAAGCACTTCCGAGACCGGACCGACCTCAACCGCCACCTGTCCTCCGTGCACTCAAGCGAGCGCATCTTCACCTGCTCCGAGTGCAGCAAGGCCTTCAGCACGCAGAAGAACCTGGCCACCCACATGAAGGTGTGCCTGCAGGGCAGTGGAAAGGCCGAGCTGGTGTGGGACATCGAGGCCCTGAAACACGTGGAGACGGGAGACGCCACCAGCAAGGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008088 True 1101 mRNA 0.59 4 41908543 41915531

Neighbor

gene id symbol gene type direction distance location
AMCG00008090 zbtb24,LOC106676336 coding upstream 14668 41892889 ~ 41893875 (+)
AMCG00008082 NA coding upstream 62533 41833262 ~ 41846010 (+)
AMCG00008084 NA coding upstream 75651 41826740 ~ 41832892 (+)
AMCG00008083 NA coding upstream 86549 41821668 ~ 41821994 (+)
AMCG00008080 pcmtd2,LOC102294427,LOC108440950,LOC103371493 coding upstream 95801 41800249 ~ 41812742 (+)
AMCG00008087 zbtb46 coding downstream 1175 41916706 ~ 41921311 (+)
AMCG00008093 LOC107724178,LOC107601334,LOC107696930,LOC108410586,LOC107594068 coding downstream 129273 42044804 ~ 42055393 (+)
AMCG00008094 NA coding downstream 156218 42071749 ~ 42072173 (+)
AMCG00008092 ythdf1,LOC108437571,LOC107668064,LOC107549989,LOC107549491,LOC107678560 coding downstream 176026 42091557 ~ 42100380 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding downstream 296841 42212372 ~ 42213085 (+)
G28329 NA non-coding upstream 180110 41728212 ~ 41728433 (+)
G28327 NA non-coding upstream 212835 41695354 ~ 41695708 (+)
G28303 NA non-coding upstream 519759 41388583 ~ 41388784 (+)
G28301 NA non-coding upstream 530250 41378051 ~ 41378293 (+)
G28300 NA non-coding upstream 536722 41370866 ~ 41371821 (+)
G28394 NA non-coding downstream 61728 41977259 ~ 41980084 (+)
G28416 NA non-coding downstream 191336 42106867 ~ 42110075 (+)
G28421 NA non-coding downstream 202390 42117921 ~ 42186382 (+)
G28511 NA non-coding downstream 585143 42500674 ~ 42500981 (+)
G28527 NA non-coding downstream 668701 42584232 ~ 42586668 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1186798 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1661305 40241312 ~ 40247238 (+)
G27974 NA other upstream 1849157 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 2073591 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 2362936 39540220 ~ 39545607 (+)
G28395 NA other downstream 77328 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 498101 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1190182 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1229274 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1377065 43292596 ~ 43305530 (+)

Expression


Co-expression Network