AMCG00008091


Basic Information

Item Value
gene id AMCG00008091
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41977687 ~ 41997684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008091
TTCTTCGGAGCCAATACGTCATTAGCGGCCTCTCCATCCATGGCCTCTGCGGAGAACGGAGCGAAGCAGACGCCCGACTCGTCTCCCTACAGTAAAGTCTTCATCCTCGGGACCATCGCAGCGGCCTCGGCCTTCCTGGTCACCGTCCTCATCATGCTGCTCTGCGTGGGGTGCAAACGGAAAGGCAAGACAAAGAAGGTCCCGGCCGAGGGGGTCAAACTCATGGACATGaatttACTCAGACAGACAAAACTGCGTTCCATTAGCAAGTCTGACACGAGGCTTCACGAGATGAACAAACTATCCACCAATGGAAAAAAGGGGGTCAAAAACCGGCCAGCCAGCATGGACCTCCTGTACCTGCCCAACCGTAAGTCGGACTGGGACCTGCGGTGCCCCCAGAGCAGGCAGCTGCCCAAGATCCCCCCGATTCCCGGGGAAAGAGAGCACACCTACTCCGAGGTGAGGCGACACTCTTCCCAGCCACGTGCTCCGGAGGACGCTCTGTACGAGAGCGTCGGGGGTAGGAATGAGCCCGACACAGCGCCCCCACCGGCTGCCCCCCAGCCCAACCCTCAGAACCCACCCCAGGGCAACGGCAACGGCAGCGCCCCGCCCACCAACGCCAAGGCCCAGGCCCAGGACGCGGTGACTGCCGAGTACGCCTGCATCCGCAAGGTCAGAAAGGCCGACAaggcccagcagcagcagccggaGAAGGGCGCCGAGGCCGCTGAGCAGGAGCCGCGCTACTCCAGCACAGAGCTGCTCTCCACACACCGCAACCACGAGCTGCCCAGGAAACCCATCGATGGCTTCCACTTGCATTCTTTCCCCAAGGAGGCAGTTTTCATGGGCAACGGAGAGCAGTACATCTGGAAGCCCCCTGAGGAAGGTGACGTCGCCCCGCTCCCGGCCAAACCGGCTGCCCCGCCACCGGTCCCGAAAGTCGACAATAGCCAGGGCCAGCTCACCAGTGTGGAGATATCAGAGATGTATTCCAAGGTGTGCAAGCCCACCAAGAAGAAGAGGCCTCCTGCATCACCCCCTCCTCCAACGAAGGACAGCAATGGGCACAAGAACCAGCGCTGCCCAGCCGCCAACGCCGAGCGGGAAGAGGTCCCTGCCTACGATGCCAATAAGCCACCAGGCTGGGCTGGGGGGGCACAGGCAGTGAGGCCCGGCGAGGACCCCTGCTACGAGTCCATAAGCGAGAAGACCTGGGCGGGCGCCGAGGAAGCCGACCCGGCGTATGAAACCATCGACGCCAACTGGAAAAGGGACAAACCGCCGGCGTCCCAGCAAGGCAAAAAGAAGAAATTGCCCACAAAGGCACACCCCAGTGAGAACTTCTACGAAAGCATCAGCGACGTGAAACAGGGGGCTTCCACCAGCACAACCACTATTTTCATGTTTAACGACGGCGTGGAGATGTACGTCACCGGACTATAGGGCCAGCCCCTCATTCTGAAGAGTCacttacatttcagttttttttaaccatgcTGCACAGATGCTGGCTGCCAGAGCAGTATACTTCACAAATCATCAGCAGATTTGACTTAAATATCCATCTATAAGGGTTTAAATTGCTGAAGTTGGTAAAGGGATTACACAAGGTTGACTCCCAGTATGAATTGTTTTGATGCTTCCATATTTCCACTTCTAATTGTTCATAGAtgtagtgtatattttgtaaataatttgatCTAGAATTTTATCCatcttgaataataaaaaaagtacttATTTTAACAGTTGTAAAGAATCTGAAGTACACCATTCTGAAATGGTTACCAGCAAGATCATTGATGAAGCAATGATTTCAAAATGCATCATATTtagctttctttttccttcttttttttctttgtgacaCCAGTGTGTGTTACGTTTCACATGAAGGTCATTTCCATTTTTGcgtatattttttccccaccacCTTGCAATTGGAGGATTCACACGCTTGATTGTCAAACCCGAGTCTCTTTTCATTTTGCACTGTGAGTCTGGAAGCAGTGAAACTCTTTAAGTGCCCACCATAGCATGGACACAGCTGCCCATTTTGTCTTGCGTCTGCAGAAACCCGACCACCCTTGACTCAGTGGCTCCCCCTGGACTCGTGCTGCTCCTTTACCAGCTTCAAGCCTTCATACAGTAGGAGGAACTGATCAGTAACAAGGATTTAGACTTACATCTTCTCCAACGAAGGCAGTGAACATGCTGCtgctttagtttttcttcaaatttgtGTTAGTGTTTGAAGTTATGGACAAGCTTTGGGCCTATGGTCTAATTCTGTGAAGTGGACTATGGATTGTTTGCCTGACAGGATTGCTTTCACATGATTATTCCTTCGCCAAGACTCGATTCCAGCAACCTCTGCCACAACCTCTGGGTAGACTGTTGATGGAGGGAGGATTCCAAAGAAAACAGAGTAATGAGCACAAAATTACAAGCGAGAGAGTTTTTGGAAACTTGCCTTTTTCTCCTCGGTCTTCAAAAAAATCATTCTTTGTAAACAAACACTTTCCCATGTAGCTTGAGAAATGTCATTttgaaagaatatatatattaagaagtGTAATAAAATCTGAAAGAGACagaagatgtttaaaaaaataaaaaagctcagGGAAAGCGACAAAATGCTGGATTAGGAATAATTAATACTGTACAGTAATATGGGACCTAAGAAAAAAGCTTTGTGAGAACGTAATTGCTGTGTTTTGAAACTGACTATGTGTCACTTTATTCAAGGTTACaaatgcactgtatattttctataagcactgtttttataaactaaaaatacatctaaaaaaaaaagatataaggCTAAATCACTGCCATGCTTAGATGTACTATTTTGTTAATGCTGTTTTTGCAATTTGCCTGCTTGAAGATGCATGCATGTACTCTGTAACGGGACCTGAGAACATTTTTCACAGATTACAGTGCAATTTCATTTCAGGATTAGCCTGCTGGATACAGGGATTATGACAACTCACCCTTGTCCAAATCTGACCAGATACTGCATAACACCAATAAAAGCTCAAATGACAGCCCTGCTTGCCAAGAGCCTCGATTTATTCACAGAGCGCACACACCACTCCGAGCAGGATGAAACAATGAGGTCTTCACCCTGGCTGTACCTTCAATAAACCCTGTCCTTGAGAGAAGCTGTTGGTGGGGTTTGGGGGAGGTAATTCAGTCTACATCGCCACCTAATTCCTCACAACCCTAGACATATCCTGTAAAGCACAAGGACGTTTTTGTGTACCAGTAGCAATGGTGACAAAGTCTTTGATGTGTGCTTCTCGGAGCAGGGGGTGAAATCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008091 True 3343 mRNA 0.49 6 41977687 41997684

Neighbor

gene id symbol gene type direction distance location
AMCG00008089 NA coding downstream 34099 41925845 ~ 41943588 (-)
AMCG00008086 NA coding downstream 106976 41851208 ~ 41870711 (-)
AMCG00008079 NA coding downstream 218815 41593802 ~ 41758872 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding downstream 384074 41592654 ~ 41593613 (-)
AMCG00008075 LOC108275976 coding downstream 599270 41368688 ~ 41378417 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding upstream 251962 42249646 ~ 42267791 (-)
AMCG00008101 NA coding upstream 297758 42295442 ~ 42299333 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding upstream 312948 42310632 ~ 42330478 (-)
AMCG00008103 NA coding upstream 333455 42331139 ~ 42354632 (-)
AMCG00008108 b4galt5 coding upstream 532397 42530081 ~ 42537841 (-)
G28378 NA non-coding downstream 131700 41844956 ~ 41845987 (-)
G28377 NA non-coding downstream 134535 41842802 ~ 41843152 (-)
G28366 NA non-coding downstream 150921 41826442 ~ 41826766 (-)
G28361 NA non-coding downstream 165613 41807778 ~ 41812074 (-)
G28325 NA non-coding downstream 349935 41627361 ~ 41627752 (-)
G28410 NA non-coding upstream 93773 42091457 ~ 42092198 (-)
G28446 NA non-coding upstream 286275 42283959 ~ 42290245 (-)
G28456 NA non-coding upstream 303593 42301277 ~ 42302097 (-)
G28509 NA non-coding upstream 478036 42475720 ~ 42476990 (-)
G28512 NA non-coding upstream 502993 42500677 ~ 42500996 (-)
AMCG00008085 NA other downstream 127733 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 565463 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 775862 41199489 ~ 41201825 (-)
G28202 NA other downstream 960439 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1689113 40268272 ~ 40288574 (-)
AMCG00008095 NA other upstream 85790 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 362216 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 763320 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1099427 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 1513076 43510760 ~ 43583413 (-)

Expression


Co-expression Network