AMCG00008103


Basic Information

Item Value
gene id AMCG00008103
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42331139 ~ 42354632 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008103
CGAGAGTTTGCAAGTTGCTCTCCCAGTTCGGCTGGAGCCGCGCATGACCCGATGCGTGTGTGTATTACTGTACCGGCCCGCAGGTCCAATCTCTGCTGCACAAACCACACTCGCCCGAGACGGCTGGGGGCACAGGAGGCGCCCCGTATTCATGGAGGGAGGGGGCAAGTGGCTGGAAAGAGGTGCACCCGTCCAGGTTGTTTaattctcctcctcctcctcctcctgctccttcCTCCCTGGGAAGCCCGGCAGGATCTGCGAGATCAGGTCCCGGACTGCAGGGGTGATGCCAATGTCTCCTTAAGCTGCCAGCTGAGGGCACACCCTGACCCCACCGGCCACTGTGCTGGCACTGGGGGACTCCAGCACCCCAGGCAGGTCCTCAGAGGAGGCCTAGGCTTTGAAACTCTGTCCAGCGCCAAGCCTCGGGGCTGGACGGGAGGTCTCCAGTTCCAGGAACTGCACGAGGCGCAGCCGTCCGCAGCTCGTTATCGTATGGCAGACTCGAGCAAGAGCCGGCCGGGCAGCACGCCCTCTGGAGTAATCAAAGCCAGATCCACAAAGCAGTCCGGCCTGACAGAGGCGGCGAAGAAATTGGGCACAGAGGACAATAAACTGGGCACTTCTGCTAACGAGAAGGTCGAAGTCAAGAAAAAAGGACGTCCCAGGGCAGAAAATCAGGAACTTAGAAGTATTCCAgCTACTATAGCAGAGAAACTGAGCCACCAGTGCCCTTATTGCGAAGCTGTATTTGCATCCAAAATCCGCCTGCAGAAGCACAAGGCCTGGAACCACGCTGAGAAGGTTTCACAAGAACAAAAAGTTGACAACAAAGTGCAGAAAGCGACCGTCAAGGGCAATGCTAAGAAAAGGGCTGCGGAGAACAGTGGAGCCACCCCGGTCATGAGTAAAGTGAAGAAGATGCAGGAGGTGTCGCAGCTCTCTCAGAACGGCGAATGTGTTGCACAGAAAGCTGACAAGAAACACACGCAGGGCACGTCCTCTGAGGAGTCCCCCAAGACCCCCGGTGGCAGCGAGAGCGAGACAGGCAGCCTGCCTCCCCCGTTTCCCGAGGAGGACCCCGAGCGAACAAGGCACAGAAGGAAACAGAAAACTCCAAAGAAGTTCACAGGGGAACAGCCATCCATTTCAGGAACCTTCGGCATGAAAGGGCTGAACAAATCAGAGGAGAAGATGAAGTCTGGGAGAGGGAAGAAATCCGACGGCAATGTCTTTAATGAAGAGGCGATAAGGAAGCTGCAGAGCTCGGCTTTGAGGAAGGAATCTGGCGCTTTCTCACCTGGGAGTCCCGAGGCGCAGTGGCAGCACGCGATCACAGAGAGAGGCGAGGTTGTCTGCCCGACCTGCTCTCTAGTCACCAGGAAGACTGTTCTCGGCCTCAAGAAACACATGGAGATCTGCCAGAAGCTGCAGGACGCCTTGAAGTGTCAGCACTGCCAGAAGCAGTTTAAATCCAAAGCTGGCTTGAATTACCACACAATGGCAGAGCACAGCAACAAGcCAATCGTGAATGAAGGTCTCGTTCAAGATGgacaggaggagagggagagactgcGGAGAGTTCTCAAGCAGATGGGGAAGCTGAAGTGTCCTAATGAGGGCTGCACAGCCACTTTCTCCAGCCTCATGGGCTACCAGTATCATCAGAGGCGCTGTGGGAAGGAGCCGTCGGACCTGGAGAAGCCGATGTTCAAGTGCAGCCACTGTGGGAAGACCTACAAATCCAAAGCTGGCCATGATTACCACGTGCGATGCGAACACACCGCCATCAACGCCACGCCGACTCCTGTGGAGACGCTGCAGGAGGTACAGGAGGAGGACCACCCGatgcaggaggaggaggcggtggAGGATTTTGAGAGGACCCCCAGTGGGAGGGTGCGGCGCCGTTCAGCCCAGGTCGCCGTCTTCCACCTGCAGGAGATCGCCGAGGACGAACTGGCCAAGGACTGGAGCAAGCGCCGCATGAAAGATGACCTGGTCCCCGACAGCAAGAGACTCAACTACACTCGTCCAGGGCTTCCAATATTTAATCCGAAAATGCTAGAAAGCTGGAAGAATGAAGTCAAGGACAAGGGCTTCATCTGTTGTCCTAACAGCGGCTGTGAAGCTGTCTATTCAAGTGTTTCAGGACTAAAAGCTCATTTAGCAAACTGTAATAAGGGCAGCGGCGCTGTTGGCAAGTATCGATGCTTGCTGTGCCAGAAAGAGTTCAACTCAGAAAGTGGAGTGAAATACCACATCAGTAAGACTCATTCTCAGAACTGGTTCCGGGCGTCTCATACTGTAGCTCCCAATAGCAAAAGGAAAGAACAACGTAATGGTTTAAAGAAGGACTTAAAGAACAGCACAACTGGAAAGAAACGAGGACGGAAGCCCAAGGAGAGACTACCTGAAGCCCCACAGAGGCCTGTGGAGGTTCCTCAGTCAAAGACTAGCACTGCAAGCTCCTCGGACAGCAGTCCTTCTCCGGCAGCAAACAGAACCAACCCAGTccaacagagagacacaaagacgCCTACAAAGAAAAGAGGGAAGCCCAGGAAGGTGCCATCTAACTAATCTGAGCATAGAAGATGTACAATGAAATTCAAGAAATCGCAAGCAATTGCATTTCACTTCTAGATATGAAGGAGTACATAAAGAACCAGacagtaaagaagaaaaaaaaactaaaacattatttcctgtatttaatttgaatttaccatgtgttttttaaccttatatatatatatatgtaagtatgtgtgtatatatatattatacatacatacatacatacatacatacagtatatgtgtgtgctgGTATATACTGATATATAGTACTCTTTTTCATTCCATTTTCAGACCTCATTTAAATTCTTAGGCTATTAACAAAAGGGGCGTCTATACCTGCAATCAAGGCAAAACccctgttatatatatatctcttttttttaaacaaagtaatattTCAATAACTTTTGCGTAGTTATCTCAACATGTACGTAGGTTTATGTTGTGTTTGAGAGGTCATAAAAGGATCTGTAAGCTATTTGATTAGCATGGTCAGGTAATTtctagtgttttgttttatgtattcaaaTCCAGATCTTGTCCATCTTACTCTAAAAGGAAgaacttaaaaaacataaaaggtcAAActtctgcttttttcctgtttgtgtaTTCTTGTTGGTTTGATTGTGGCAGCTGAACTTTGAGAGTGACAAATTCCTTAATCTTTGATGGTAGCAGGGTGGCTTTGATAATGAGCTGCAGTGcaatattttattctaaatagCCAACTCCATATTTTCGAAAGTAATATTACACAACCAAGGCCATTAACTCAGCTCCTTCCCTCACTCCTTAGTTATTACACTCGCACTTCAAACACACTAATTGTGGTAAACTAAGTGTGGTGAACTAAACTAAGTGTGGTTTATTGGGGTTCCACCACTGTATTTGGTATTTTCTTAACTCTTTGCCTTATATCACaaataacattgtgtgtgtgtgggggggtgggggttaccCACAGAATCAAGAAAAAGTCTGTAAATTAACAACTTTATTTTCATCAGAAACTGTTTACCTTCGGATCGCAGCAAAAATACTCACCTTAAACAATCGACTGTCTTTCTTGTcggcaaataaataatgtcagaGTGGTACAATAACTGCTATTCTTCTAAAGAATAGCGAGCATTTACAGCGCTGTTTTAGACCCTGTCCTGAATTATTGCAGTGAAGAggcaatgtaaatatatgtgtctgtattttaGTCTTTGAAAGAGATTTTACTCTAGAAGATGGTTTTAAAAGATGCGTTAAGACactttgttgaaaataaaaaaaaatcttgcaaaAGCCAATTTGCACCCTATCCCCTTTCTCCacaattgcagttttattcagCGCGGCATTGCCAGGATTCATAAGCATGGTCAAGCTCAATGTCCATATGCAACGATGCCAGCAGGTTTAGCATTTAAGatataaatacagtttatatttttagaaCTTGCAGCACAATTAAAGTcgttattttgtgttgttgttttgtattgttttcatttgctaGGGTTTAGATGTCGCtagcaaagcatttgttttaaaccaattataaaactgacatattttttaaattaaatgaatctaGAAATATACAACGTAATAAAAGCGTGTTGAAAGAGCTCATGAGTATTCTAACCTGTGAGGAGGGATACTATTTACTGCTGGTTGTTAAACTTTGTTGCCTTGCACTTTAAAACTCCCATTGATCTTGCACTTCACGGGTAAAATGTAGTTCTCTGAAGTGGGTGTGTATACCAAGCTTAAGGAACATTACAGGGCTTAGCCGTCCAGTACTTCACCCATGGCGTCACACTTTATATGTTGATAGCTTTTAACGTACTATAGTGTGACACAAAAAGGTGAATGAAATCAATTTATAATCTCATGAAACTTGTaccttatatatttttaggaaaataaatacttgaagtttaaacaaatgattaaaaatgaaattatagctagtcaatatattttgatttaacgATTTAAGCTCCACTCTTACAAGGTATTTGACTTTATACTAGATGTAGGACAAACCACCATAGATTAGAAGccatacatttgtttctttcttccttcttaCTTCGATGGCCACCAGCTTATTACACAGATTTTGGGAAATTAGTATGTGTTGAAGTTGTTACCGGAAGAATCCCTTACACAAGAACTCCTGAGTGGAATGAGATGAAATGGGTGAACTAACAGCTAATCTACCTAATATACACCTAACCGGGTGCATAGCAATTCAACATGTCCATCTAATAatgtcataatttatttttttcctgagctTACACTGCAGTGAAGCAGAAAAACTGAACATAAACCATAACAGGAAGTGTCTCATGGTAGTTATTAATCCGTTAACATTATAGGGTATGTGCTTCCTTCATTAAGCTTGACTTCTATAGCTGACAGTTCTAAGCCGATGTGTAAAAGGAGATCTGTACAAGCAGTTcacataatattgttttatttcactccAGAAACCTCATAGTTGTACAGTCGGATCCACCTTAGGGAAAACATAAGCTCCATTGCCAAagttgttttcacattttggtaTTGTTACTGAAactggtattattttaataattactttaatttatagCCCAGGTCTAAACACATTTACGAGTGTTTGGGGGAATTAACACCACCTTGGACAGCCAAGTGTTATTCACAGAATTTGTTTCCACTTCTAGTTACCTAATactattcaatatttaatatttaatgtatggtAACTAGCGCCCCACAATGTGTCTGCActaatctgtgttttttattttattatttctaaagaGCCTCTGTTGTGGGCATTTAAGCTTTCTTAGCTTTGAAGAGGTGTCCAGCGCTAGTGTGGCcatggagaaaagaaaatgagataCCGTCGTTTTAAATCCTGGCCTATAAATAAACCTGCCTAGCATACACATTATGTGGAATATCTTTctagtggctctggaggaaatATTGACCTGTGTGCTGTTAggaatctgttttttgttgtattttaaactgcCTCTTTTGAACTGCTTGTTTACAGTACAAGCCTTCAGGTTCTTCTCATGAAATGTCAGCACGTGACTTgcaacgtttttttttttaaccatctgTTCATTCTGATATACTACAACTATATATGGTCATGTGGAAGTGTTTCTCCCTTTTCTAGGAGTTCAATATACTGAGCGTCAATATCTCAATATGATCATAATCACTGTGCTTACAGAGAAACTATTTAATCTTAGCATCTGTGATCTGTCTTCCTAGACTACCTGGCATACTTATGCGTCACTTTTAAATGCAGTACAGAAAGTACTCTTAAAGCTCAAACACTCTGCAACTAccataataaacattaatatcGCCTTTCAGAAACATAATTCTGGCCTATTTTAGTCAGCTTCTCTATATTACTTTATTCCACATATACTATTGCTACTTTAAGGGTACATGgctacatttgtgtgtgtgtgtgtgtgtgtgtgttgcattttattttatttttctaaaggaCGACGAAATAAACATTAGGTAGCCACAATTGAGTTTGAAAATATCATGTATTGTATCTCAAAAGTGCACTATTCCCCTTAACAAGCTTGAATTGCAGAGGTGTGGGCATCCCAGTTGGCCTGCATAATGTGATTTAGATTTTAGGGTCTCTGGGGCAACTTTGGCATGTGTCCTTTTGCAGCATTTTTCAGCTTATTTGGTTGTAGTTTTTACCTGGAAAAGCTGCCTGTATAGTAAAAAGCAATGCAGCATTCAGGTGGGTTGTTATTTTAACGCAACCTTTTTAGAGGACATCTGAGGCTGAGAAGTtaagagtaaaaaaaacaacaacagttcaATATCTGAAGAAACTGTGAAGGAACTGTTATCCGTATCTGTCCAGAGAGTAGCAAGTTTACAGTAATAAAATAGGAAATTGTTcaatcttatttttgtttctctgttgcAGATCTTCCTGTTTGAAGCTATTTAAAGTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008103 True 6589 mRNA 0.43 18 42331139 42354632

Neighbor

gene id symbol gene type direction distance location
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 661 42310632 ~ 42330478 (-)
AMCG00008101 NA coding downstream 31806 42295442 ~ 42299333 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding downstream 63348 42249646 ~ 42267791 (-)
AMCG00008091 NA coding downstream 333455 41977687 ~ 41997684 (-)
AMCG00008089 NA coding downstream 387551 41925845 ~ 41943588 (-)
AMCG00008108 b4galt5 coding upstream 175449 42530081 ~ 42537841 (-)
AMCG00008112 NA coding upstream 343505 42698137 ~ 42704412 (-)
AMCG00008114 NA coding upstream 410361 42764993 ~ 42808108 (-)
AMCG00008118 dhx35,LOC102790768 coding upstream 660724 43015356 ~ 43028990 (-)
AMCG00008117 NA coding upstream 675224 43029856 ~ 43036431 (-)
G28456 NA non-coding downstream 29042 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 40894 42283959 ~ 42290245 (-)
G28410 NA non-coding downstream 238941 42091457 ~ 42092198 (-)
G28378 NA non-coding downstream 485152 41844956 ~ 41845987 (-)
G28377 NA non-coding downstream 487987 41842802 ~ 41843152 (-)
G28509 NA non-coding upstream 121088 42475720 ~ 42476990 (-)
G28512 NA non-coding upstream 146045 42500677 ~ 42500996 (-)
G28532 NA non-coding upstream 168173 42522805 ~ 42594860 (-)
G28900 NA non-coding upstream 1508975 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 1539547 43894179 ~ 43895951 (-)
AMCG00008095 NA other downstream 241646 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 481185 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 918915 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 1129314 41199489 ~ 41201825 (-)
G28202 NA other downstream 1313891 41016159 ~ 41017248 (-)
AMCG00008104 samd10 other upstream 5268 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 406372 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 742479 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 1156128 43510760 ~ 43583413 (-)
G28970 NA other upstream 2063242 44417874 ~ 44418196 (-)

Expression


Co-expression Network