AMCG00008104 (samd10)


Basic Information

Item Value
gene id AMCG00008104
gene name samd10
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42359900 ~ 42401074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008104
GCGAGccaaggaaattaaaaagaatgcACCAACTCTAAGAATCCTGAACTCGCCCTCGGGAATGAGATCCGCCAGTCTCAGGCAGTGCGGTCACTGCAGCAGTGCGGGGCTGAGACAGAAGGAGGCCGAACTGCCGAACCACACAGTGATCCGTCCAGGGGAGGCGTTTGCTGTTTACCACACCAGCCCCACGTTGTCCAGCCTCTCCAAGCCTGTTGTTCTCTGGACGCAGCAGGACGTGTGTAAGTGGCTGAAGAAACACTGTCCGCACAACTACCTAACCTACGTAGAGGCCTTCTCACATCACGCTATCACAGGACGAGCTCTGCTGCGGCTCAACGGTGAGAAACTGGAGCGTATGGGGATCGTACAGGAGACCCTGCGCCAGGAGGTCCTACAGCAGGTTCTGCAACTGCAAGTGCGAGAGGAGGTCCGGAACCTGCAGCTGCTCAGTCAAGCTTCCTTCGGAAACCTTTCTTAGCTCATCCGTCCGTTTGGCAGCCTGCTCTGGCACAATGGATGCCTGATACCTCTGGGAGGAACTGCAGACTCCAGATATCAGAACGGGGAAAATCATGCCCTGAATCGGAAAGGAGGCTTTAGCCAACCAGGGACGGATTCGAACGAACTGCAATTCTGCTTGGTTTAAGATGAACACACTGTCTAGGAGGGATGGACATTGTATAAAAGAGGATTCACAATAACAGCCTGCAATCTCATTTGAACATTATTAGTGAAAATCAAAGgaaaactctttttttttttactccacgGACAGAGCTTTCATCGGCcgaaaataagaataatttatCTTAGAGTCATCTTAGAGTCCTCACAGACGtgaaattgttaaaatgttggtgtgctttttcttttccacgtgctataggttttcttttttcttgcagGTTTGTGTCTCGGAATATATGTGTCTTGAAAACCTGGGGGGTTTCCAAGACACATTGTTGTTTCCTAACTCATCATACTGAATGTGGTTGAATGTCAGTATTCTTCAAATCCAGTCCTCAAGAGTCAgtgtttctggttttcattccacctatATGCTCTTAATTAGGTGATTGAACTAATTGAACTCCCATTTCCGGTTTCTAATGGTGGTGATTTCAATAAACTTATAAAACCTGTTAGAGTGTGACAGATGTTGTCTATACAAattctcaaaataaaacactctcagcagaacaaataaaaacatttggttGGTAAAggcattataataattacttgTCCCCCCATTATTGAGAGAGCGTCAATTGAAAGCATCACCCCACTTTTCTGTAAGACACGTTCATTTTTAGAAGTTATTTACAAGGTGTACAGGTGAAATTGTCCCACAACTATTTTTTCTATGTCCCCGAACCCTGCTCTACGACTCGACAACCCCACCTCCCTGCCGCTCAACAACACAATGAatgccccccacacacaactGCATAGAACCAAGGCCACCTGAAATTTtgacaaaacattttgatgTAGGGCATTTCTTCCATTCTTGAGAAAGCAATAACTACACAAGCATTAATGCTCCTTCACAACTGTGGTGTCGTGCCCAAGAACATTCTATGGTGACACTATTACTATGTGTACTAAATGTGTTCTCCATTTTTGGTTTCTCTTTGTGCGATGAATCATTCCCCTAAACTATTTTGTGGCTCCAAAGCTGTTTCCAGCATTCTTACTAAGTCTTTGATTGCTGACACATAATAAAGTATAAACCTTTTCATTACTGCACTTGCTCAAATGTGTGCCGTCACACATTGGGTAACATTTCATGAAGTGTATTTCcaaatcaaaatacatgttGAGCTCTGAAtcattatatttcacatttgttatGTAGTCAACACTATGCTCATGGACTTTTGACTTTAAAATGTTCTAGTTTTCCTACGAGGCAGATACCACTCAGGGGTTGGATATAGTGTGGAAAATTCTATGTCACTGTTGAGTCATTTGCCTATTCTAATACAGCTTTGAAGGATATTGCTCAGTATAACTACAGTATAAGAGTATTCAAACTTATCTAAAAATGTCCTGTTTTGTAGGTAGTTAACAAGATacaaaagttatatatatatgtataaatatatatataatataaaatatacaatatatataaacacacacaatggaacACTTCCCTGTGTGTTATAAATAGAAGTGTATGTACTTTACTTGCAGATTCAGCATGGAAGTGCTTTCAGAACAAAGCTTGTTTTCCAACCATTTCATTCCTGCTtcctacataaaaaacaaacaaactgtgagccattttgaaaatctgagttctgttcatttgtttgtgaTGCCGTTACCTTCGGGGAAGATGTCCGGTGGAAGTGACGAACAGTCACTGTTGTAGGAGACAACCTGACGTGTGTGGATTCTGTTTGCTATTCTTCACTTCTTTATTCGACCTCTCCCACAGACTAGCCTTCAGCGTTTTGCCATCTCTGTACATTCACAAGGGCGTCTGATCCTCGGCTGCGCTCGAATCGCGTGGATCTCTCTTCAACAGACTTTGACTGTTTGGAGGTCGGACAGACTGTTACTGCAGATGCACCTTCTCCACAGCTTCACCCACATGGTCTTTctttgtaacactttttttgcaaaagggatttgaataaaataaaaaataaaatgtgtgtaattaccAGCTGtacagaaattaatataaacagaaaggaaaacagttgtcttttttaataaaaaactaaaatta
>TU35673
CTGACCACTGCACTGGGCACTGCTTTAGACGGTCAGGTATGTAGGGAGGagttatttgaatgtgtttccGGCTGCTATAGATTGAACACAAGAGCAGAGGCTGGCAGAGCATCAGTCAGTGTGGCGACAGGGaagcgcagcgcagcgcagcaccgagcccctctccctgtctgttACAGCGGCCAGTGTCCACCACAGCATGGGACATTTGTAAGCAAACACGGCGAGAGAAACACTGCGACCTGCAATGGCTGTGGACGATCCGTCCAGGGGAGGCGTTTGCTGTTTACCACACCAGCCCCACGTTGTCCAGCCTCTCCAAGCCTGTTGTTCTCTGGACGCAGCAGGACGTGTGTAAGTGGCTGAAGAAACACTGTCCGCACAACTACCTAACCTACGTAGAGGCCTTCTCACATCACGCTATCACAGGACGAGCTCTGCTGCGGCTCAACGGTGAGAAACTGGAGCGTATGGGGATCGTACAGGAGACCCTGCGCCAGGAGGTCCTACAGCAGGTTCTGCAACTGCAAGTGCGAGAGGAGGTCCGGAACCTGCAGCTGCTCAGTCAAGCTTCCTTCGGAAACCTTTCTTAGCTCATCCGTCCGTTTGGCAGCCTGCTCTGGCACAATGGATGCCTGATACCTCTGGGAGGAACTGCAGACTCCAGATATCAGAACGGGGAAAATCATGCCCTGAATCGGAAAGGAGGCTTTAGCCAACCAGGGACGGATTCGAACGAACTGCAATTCTGCTTGGTTTAAGATGAACACACTGTCTAGGAGGGATGGACATTGTATAAAAGAGGATTCACAATAACAGCCTGCAATCTCATTTGAACATTATTAGTGAAAATCAAAGgaaaactctttttttttttactccacgGACAGAGCTTTCATCGGCcgaaaataagaataatttatCTTAGAGTCATCTTAGAGTCCTCACAGACGtgaaattgttaaaatgttggtgtgctttttcttttccacgtgctataggttttcttttttcttgcagGTTTGTGTCTCGGAATATATGTGTCTTGAAAACCTGGGGGGTTTCCAAGACACATTGTTGTTTCCTAACTCATCATACTGAATGTGGTTGAATGTCAGTATTCTTCAAATCCAGTCCTCAAGAGTCAgtgtttctggttttcattccacctatATGCTCTTAATTAGGTGATTGAACTAATTGAACTCCCATTTCCGGTTTCTAATGGTGGTGATTTCAATAAACTTATAAAACCTGTTAGAGTGTGACAGATGTTGTCTATACAAattctcaaaataaaacactctcagcagaacaaataaaaacatttggttGGTAAAggcattataataattacttgTCCCCCCATTATTGAGAGAGCGTCAATTGAAAGCATCACCCCACTTTTCTGTAAGACACGTTCATTTTTAGAAGTTATTTACAAGGTGTACAGGTGAAATTGTCCCACAACTATTTTTTCTATGTCCCCGAACCCTGCTCTACGACTCGACAACCCCACCTCCCTGCCGCTCAACAACACAATGAatgccccccacacacaactGCATAGAACCAAGGCCACCTGAAATTTtgacaaaacattttgatgTAGGGCATTTCTTCCATTCTTGAGAAAGCAATAACTACACAAGCATTAATGCTCCTTCACAACTGTGGTGTCGTGCCCAAGAACATTCTATGGTGACACTATTACTATGTGTACTAAATGTGTTCTCCATTTTTGGTTTCTCTTTGTGCGATGAATCATTCCCCTAAACTATTTTGTGGCTCCAAAGCTGTTTCCAGCATTCTTACTAAGTCTTTGATTGCTGACACATAATAAAGTATAAACC

Function

symbol description
samd10 Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane.

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 10 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008104 True 2749 mRNA 0.41 5 42359900 42373792
TU35673 False 1853 lncRNA 0.45 4 42360908 42401074

Neighbor

gene id symbol gene type direction distance location
AMCG00008103 NA coding downstream 5268 42331139 ~ 42354632 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 29422 42310632 ~ 42330478 (-)
AMCG00008101 NA coding downstream 60567 42295442 ~ 42299333 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding downstream 92109 42249646 ~ 42267791 (-)
AMCG00008091 NA coding downstream 362216 41977687 ~ 41997684 (-)
AMCG00008108 b4galt5 coding upstream 129007 42530081 ~ 42537841 (-)
AMCG00008112 NA coding upstream 297063 42698137 ~ 42704412 (-)
AMCG00008114 NA coding upstream 363919 42764993 ~ 42808108 (-)
AMCG00008118 dhx35,LOC102790768 coding upstream 614282 43015356 ~ 43028990 (-)
AMCG00008117 NA coding upstream 628782 43029856 ~ 43036431 (-)
G28456 NA non-coding downstream 57803 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 69655 42283959 ~ 42290245 (-)
G28410 NA non-coding downstream 267702 42091457 ~ 42092198 (-)
G28378 NA non-coding downstream 513913 41844956 ~ 41845987 (-)
G28377 NA non-coding downstream 516748 41842802 ~ 41843152 (-)
G28509 NA non-coding upstream 74646 42475720 ~ 42476990 (-)
G28512 NA non-coding upstream 99603 42500677 ~ 42500996 (-)
G28532 NA non-coding upstream 121731 42522805 ~ 42594860 (-)
G28900 NA non-coding upstream 1462533 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 1493105 43894179 ~ 43895951 (-)
AMCG00008095 NA other downstream 270407 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 509946 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 947676 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 1158075 41199489 ~ 41201825 (-)
G28202 NA other downstream 1342652 41016159 ~ 41017248 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 359930 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 696037 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 1109686 43510760 ~ 43583413 (-)
G28970 NA other upstream 2016800 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2748427 45149501 ~ 45228504 (-)

Expression


Co-expression Network