AMCG00008105


Basic Information

Item Value
gene id AMCG00008105
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42444636 ~ 42448120 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008105
CCTTGTTCTCGCGACTTCAGTTTCCGGAGAGAAAGCGGAAGCGGAAGCGGACGCTCGGACACGCACTTCCGCTCAGACGCGGGTGTTGTTGTGCTAGAGCAGCGCGGTGTGAAGTGCAGCGGCTGTGCAGGCATGGCGGGGGTGGAGATGGACCCAGAATTGGCACGCAACCTGTTCGAGGAGGGGGCCACCCTGGTTCTCCTGGGAGTCCCTGAGGGGACCGAGCTGGGCATCGACTACAAAACCTGGCAGGTCGGCCCCCGCTTCCGTGGGGTCAAAATGATCCCGCCGGGGCTGCACTTCCTGCACTGCAGCGCCTCCAACCGGCAGGGCCAGGGAGGGGAGACGGGCCCTCGGACTGGGGTCTTCCTCTGCCTCAAACCCCGGGACGTGTTGTTGGCTCACTGGGACAGCACGGAGGAGGACCTGAACTTCTCGGCCTCGCAGAACGAGGAGGAGGTGGCGCGGGTGCGGGCAGGACTGCGGGACCTGGACCGCTTCCTCGGGCCGTACCCTTACGATGTGCTGCGGAAGTGGGTCTCATTGACCGACCGGGTGACCCAGGAGGTGGTGCAGAACCTGCAGCCCTTGAGTGGCAAGATCTGTGCCTTCGCCGATGTGATCCCCGAGCTGTCCCTGCCCCACACCCAGGACCGGGTGCAGCAGAACCTCCCCCGCAACGACACCGAGTGCCAGAGCATGAAGGAGGGCTTGGAAAGGCTGCCCAAGATGAAGCTGAGAGAGGGCACCGAGCTGCGCTTCTCCGAGATCCCCAAACAGAACTACCCGGAGGGAGCCACACCGGCGCAGATCACGCAGTGCAGCATGGACCTCAGCTACGCCCTCAACTGCCTACTGGAGCGCTACTACAAACAGGACCCCCTGAAGATCCTGGGGGAGCTGCAGTTTGCCTTCGTGTGTTTCCTCATTGGCAATGTGTACGAGGGCTTTGAGCACTGGAAGCAGCTCTTGAACCTGCTGTGCCGCTCTGAGGATGCCATCCAGCGCCAGCGCGACCTCTACCTCAACCTCATCACCGTCCTCTTCCACCAGCTGGGCGAGATTCCCCCAGATTTCTTTGTGGACATCGTGTCCAAAGACAACTTCCTCACCAGCACCTTGCAGGAGTTCTTCATGTTCGCCAGCAGCCCCGGTGTGGACCACGGGCTCCGGAAACGGGCTGTCAAGTTCAAAGCCCACCTCACCAAGAAGTTTCGATGGGACTTCGAGATGGACCCCGATGACTGTGCTCCCGTGGTGGTGGAGCTGCCAGAGGGCGTTGTCCAGGACTGACTTTGCCCCCTTTATCGAGTCCCCTCCCAGACAGGACCCTCACAGAGGTGAGCACCTTGACATCTACAGACGGGACGGGAGCTTTCTTTTGCTCGGCCGGCCCTCGATAACATGGTTTTAGTAAAGGTGTCGTATGGAGTTGGGATGGGGAATGTAATTACTTCCAAACCTGGACTTTCGAAAGCAGATGTATCTTGAAGTCAAAGACTGGAATTTATATCATCGTGATGGACTCTCAAGCCCTTTTTCAATTGTTGAATCTGAACAGTTGGTGTAAATCTGGTCCGATGGGGCGGCTGCAGGGTTTTTGTGAAATTCTGAATCTGAAGATCGGGGTGCTGTGAAGAACTGGTcttaaatagtttgttttgttttttctgtgagaGCTGAACCCACAGCCACACATGGCAATGAAAAtctattttgtagttttttacaggatgtttttaatggccattttttAAGCAGTTCATCACAGGACAATAAAAGTAAATTCTTATGGGATGTGAAGTTCCTGAAAAGAGAGGGGTCGTATGCATCTACTATTGTCCAGTTTCCTTCCAGTTCTCAGCCCGTTGAATCCAACACTAATAGAGAATAGTAAAGGAATGCATGTGCAGGATACTGTACACCTGTGCGTCTGCAGTATGAAGCCAGCTGAGATCCGGGCAGGGCTAGCAGAGAATGTAATGAGCAGTGCAGTAAAGTAAAAAATGCACAAAGCTTGCAGGAAAATGGGTTTGATTGAGACATTGTTACTTATTCCAACCCATGATGACCTGTGTTGGCACAAGATTTTACCACCCATAATTGGCTGATTCcagattgaaaGTCTGTGTAAAACTAGCTATTGCATTTCCTTTGATGTCATACTGAGCATTGTCCTGCAATAAAGCTCTGAGGGCACCGCTGTGCAAAATCGGGTAGGGTAATCATTCATACTGGGGGAAACGAGCGACTGGGGGACCACTTGctatcatttttaaatctttgcaaTACAAGTAATAATCCTCAGAAAATTAGACTGatctcatatttaaattaatggttTTTTTGTCATCCTCTGTGTGAATTTGCAAGGTTTCCCGGTTAAATTGTATTGCACTGGAGGACTGTAAACCTACACTAGATGGCGCACTTAAGCCAGTTGTCTCTCAAATAAAGtactagaaaaaataaatgaaaacgcACTGTACGTTGCCAGACAGAtggaaaaccaaaaatataaattgcatttttttttttattccaca

Function

GO: NA

KEGG:

id description
K13205 AAR2, C20orf4; A1 cistron-splicing factor AAR2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008105 True 2546 mRNA 0.52 5 42444636 42448120

Neighbor

gene id symbol gene type direction distance location
AMCG00008106 NA coding upstream 2213 42438343 ~ 42442423 (+)
AMCG00008099 NA coding upstream 144297 42290716 ~ 42300339 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding upstream 155200 42279769 ~ 42289436 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding upstream 231551 42212372 ~ 42213085 (+)
AMCG00008092 ythdf1,LOC108437571,LOC107668064,LOC107549989,LOC107549491,LOC107678560 coding upstream 344256 42091557 ~ 42100380 (+)
AMCG00008107 NA coding downstream 61767 42509887 ~ 42520350 (+)
AMCG00008110 slc9a8 coding downstream 104277 42552397 ~ 42579983 (+)
AMCG00008109 NA coding downstream 208071 42656191 ~ 42657239 (+)
AMCG00008113 NA coding downstream 243906 42692026 ~ 42692859 (+)
AMCG00008111 NA coding downstream 256864 42704984 ~ 42713579 (+)
G28421 NA non-coding upstream 258254 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 334561 42106867 ~ 42110075 (+)
G28394 NA non-coding upstream 464552 41977259 ~ 41980084 (+)
G28332 NA non-coding upstream 508422 41846992 ~ 41936214 (+)
G28329 NA non-coding upstream 716203 41728212 ~ 41728433 (+)
G28511 NA non-coding downstream 52554 42500674 ~ 42500981 (+)
G28527 NA non-coding downstream 136112 42584232 ~ 42586668 (+)
G28548 NA non-coding downstream 173830 42621950 ~ 42622157 (+)
G28637 NA non-coding downstream 660930 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 729682 43177802 ~ 43201203 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 7408 42413632 ~ 42437228 (+)
G28395 NA other upstream 451259 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1722891 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2197398 40241312 ~ 40247238 (+)
G27974 NA other upstream 2385250 40056632 ~ 40059386 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 657593 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 696685 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 844476 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2575028 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2699277 45147397 ~ 45171828 (+)

Expression


Co-expression Network