AMCG00008107


Basic Information

Item Value
gene id AMCG00008107
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42509887 ~ 42520350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008107
GATGCCAAAGGGACCTTCTATGGAAGCCCTTACAGATACAACCTTTACAAATCTGGGCCAAACCCTCATTTCACTCCAGGCAAACCGATGAGCCGACACAAAAACTATTGTGCATATGTCGTCCAGAGGAATATCACATGCACGATGCAGGATGGGACTTCTACCTACGTCAAGGCCGAATACACCAAGTGTGCCTGGGGGCAGAAATGCCCAGTGGTCATGTATCGGACTTTCTACAAGCCCAAATACAAGGTTGGCTACAAGACAGTGACGGAGCTGGAGTGGAGGTGCTGCCCTGGCTTCTCAGGGGAGGGCTGCTACGAGGGTCCCACGTCTCTCCCGGACATGATGCCTCCCTTCAAGGGCTCCATGACTCCCCCGGGCTTCAAGGGGCACCCCCGGGGACACCCCAGAGGACACCCCGACCACAAGTCTCCCCCCACTGGGCACCTCGAGCCAATGAAGCCCTTCCCGGTTGGACAGCCCATCCCTACGGGGCACATGCCACCTGGCCACACAAAAGCTCACTATGTGACAGTCTTCCAAAGGGTTAATGTGGCCGATCTTTCCTTCTCTCCTGCAGCTCACAAGTTCCAGGGTCTCCTGGGGGAGCGCGTGGACCgaatggaggaggagctgcggCGGCTGTCCCAGGGCTTCGACTCGCTCAACAGCATGGTGACTGGCCTGGAGGACAGCCTGCGCCTGTCCATGCGTGAAGACACCAACAAAATGCTGGGCTCCTTGCTCAACACCCCTCCTCGCCCCTCCGACATCGGCGTGGGCTTCGGAGTCCTTCCTGCCGGCTCCCCCGATGGCCTGGCGGGAGGGGAGGATTTCCCTGGATTTGGGGACCTGGCAGGGAGGGTGACGGCGGTGAAAGACGAGCTGACCGAACTCCAAGGCACGGTGTTGGGCCACGATGGGAAGCTGAAGCACCTGCTGGACTCTGCCAAAGGGAGACCCTCTACTGTGATCTCCCAGACTGCCATAGAGGAGCTTGTGGATTCAAAGCTGGCAGGGATACGGGCCGAGATCCTCGACGGCTTCGAGAGGCGCTTCTCTGGGCTGGAGATTCAGTGTGAGGCCCGCATTGGGGAGATCCAGCGCCAGTGTCATCAGGACCATCTCACCGGGCAGCAGCAGATGCAGCAGACTCTGGATGGAACAGAGACTGGCCTGAAGAAGGAGCTAGGAAACCTGCAGGCACAGATTCAGGGCCTGACATTGACAGAGAGCTGCTGTGGCCAAGTGTCCAGCCTGTCAAACCGGGTCCTGCTGCTGGAGGAAGCAGTGAAGCACCTGACCGAATCACTAAGAAACATTCAGTCCATATTGCATGGGGATGTCACTTCGATTGATGGACGTCTGGAAGATATAGAAGCCAGGTTGAATTCTACTGAGAAAGACAGTGCTGATCCCCAGGGGCAGGGGAGCTTGGTTACTGGCCTGGATGGATTCAAGAACATTCTGGATGAGAAGTTGAAGGTTCTGGAGGATCGTCTCGTCGCGGTCGAGCAGCTCAGTAACGCCACCTCCCCAGCTCTTCTTGAAGGTCAGGCTGTTCCTGCACTAGAGCTGCAGGCCATTCGAAGGCGGATGGAGGGCGAGCTGGATGGCATGCAGAAGCAACTGTCTAACCTGGAGACCCTGTGCTCCTCTGGCTGCACACAGGCCACCGGGGATGTGCAGAAGCTGCACACAGAGATGGAGGAGTGCCGGGACACGGAGAAGAGAGTGTCTGGACAACTGGATGTGCACTCCGACTTCTTGAACCGGCTCAACAGCACGCTGCAGCAGATCTTGGCCAAGCTGgcgagggaggaagaggaaggctCCATCCAGGGCGAGATCACGCTCCTAAAGATCAACGTCAACTCCGTCAACCGCACCCTCAAGGGCCTGCGGGACTCTGTGAGCCTGTTTTCTCGGGAGGTGAGCCACGCTAATTCCACCTGGCAGCAGCAGGAGCTCAAGATAGCAGACCAGGTACAGAGTATCCACCAGCTGGTAGGGAGACAAGCCTCCCAGCTGAGCCTCAGCGAGCGCCGGCTCCACCAGCTGAAGGGGGAGCTGCAGGGCCTGAAGCACCGGCTGTACGGAGAGGTACAGGGCTGCAAGAACACGGCGCTGGGGGTGCAGAGGGAGGTCACCCTGGTGGACGGCCGAGTGACGCAGGTAGAGGGGCTCTGTGGAAACCTGGGGGACTTGGCAGAGGACCTGGAGAGGATCCGGGCGGAGCTGGAGAGCCACTCCAACAGTTACCTCTCGCAGATGAACGGGACCATTTCCAACCACTCGAGTCAGCTAGTGGAGCTGAAAGAAGGACTTAAAGACTGCCTCAACAAAACGGGGGAAGCAGAAACAAGAGGAGATCATTAA

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008107 True 2382 mRNA 0.58 4 42509887 42520350

Neighbor

gene id symbol gene type direction distance location
AMCG00008105 NA coding upstream 61767 42444636 ~ 42448120 (+)
AMCG00008106 NA coding upstream 67464 42438343 ~ 42442423 (+)
AMCG00008099 NA coding upstream 209548 42290716 ~ 42300339 (+)
AMCG00008098 dnajc5aa,LOC107668106,LOC108412505,LOC103036084,LOC107090698 coding upstream 220451 42279769 ~ 42289436 (+)
AMCG00008097 bhlhe23,LOC102799046,LOC107737661,LOC107560898 coding upstream 296802 42212372 ~ 42213085 (+)
AMCG00008110 slc9a8 coding downstream 32047 42552397 ~ 42579983 (+)
AMCG00008109 NA coding downstream 135841 42656191 ~ 42657239 (+)
AMCG00008113 NA coding downstream 171676 42692026 ~ 42692859 (+)
AMCG00008111 NA coding downstream 184634 42704984 ~ 42713579 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding downstream 241176 42761526 ~ 42762545 (+)
G28511 NA non-coding upstream 8906 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 323505 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 399812 42106867 ~ 42110075 (+)
G28394 NA non-coding upstream 529803 41977259 ~ 41980084 (+)
G28332 NA non-coding upstream 573673 41846992 ~ 41936214 (+)
G28527 NA non-coding downstream 63882 42584232 ~ 42586668 (+)
G28548 NA non-coding downstream 101600 42621950 ~ 42622157 (+)
G28637 NA non-coding downstream 588700 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 657452 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 1373759 43894109 ~ 43895951 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 72659 42413632 ~ 42437228 (+)
G28395 NA other upstream 516510 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1788142 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2262649 40241312 ~ 40247238 (+)
G27974 NA other upstream 2450501 40056632 ~ 40059386 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 585363 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 624455 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 772246 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2502798 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2627047 45147397 ~ 45171828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022106 FQ323119.1 coding NC_007134.7 CM002907.2 4086493 ~ 4091009 (-)