AMCG00008108 (b4galt5)


Basic Information

Item Value
gene id AMCG00008108
gene name b4galt5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42530081 ~ 42537841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008108
ATgtctcttgtctctctctctccccaagTGAACGAGTATCTGTTCATGGTCCAAGCTCGAGGCATCCAAATCAAAGAGAACATGCGGACAATCGGGGCCCAGGTCTTGGAGCAGGTTGTTCGGGGAGCGTACAACTCATTCAATGGCACAGATTATCCATATGATTTTAACCTCAGTGAGCCCTACATCCAAACCACAACTTTCCTACCAGAAGGCTTTACATACCATCCCAACCAAACGTGTCCTGAAAAGCTGCCCTCAATGAAGGGCCCTCTGGACGTCAACATGAGCGAGGTATCCCTGGAGGAGGTGCAGAAGTGGCTGCTGCAGGACGAATCCGGCATCCAGCTGGGGGGTTACTGGAAACCCCGAGACTGCGTTCCTCGCTGGAAGGTGGCCATCCTCGTTCCTTTCCGGAATCGGCACGAACACCTTCCCGTCTTGTTCAGGCACCTCGTCCCGGCTCTGCAGAGGCAGCGGCTTCAGTTTGCCTTCTACATTATTGAGCAGACCGGGACACAGCCCTTCAACCGAGCCATGCTGTTCAACGTGGGCTTCCAGGAGGCCATGAAAGACCTGGACTGGGACTGCATGGTCTTCCACGACGTCGACCACATCCTGGAGAACGACCGCAACTACTACGGATGCGGCGAGATGCCCCGGCACTTTGCGGTCAAGCTCAACAAATATTCCTACATGCTGCCGTACAATGAGTTCTTCGGGGGCGTGAGTGGGCTGACGGCGGAGCAGTTCCGCAAGATCAACGGCTTCCCCAACGCCTTCTGGGGCTGGGGAGGCGAGGACGACGACCTCTGGAATAGGGTTCAGTTTGCTGGTTACAGCGTGAGCCGGCCACCGGGAGATGTCGGCAAATACATGTCCATCCCTCACCACCACCGAGGAGAAGTGCAGTTCCTGGGCAGGTACACTCTGCTGCGGCACTCGAAAGAGAGACAAGCTCGAGACGGACTGAACAACCTGAAGTACACCCCCCTGCTCTCCCGGAAGCCTCTGTTCACCAACATCACCGTGAACCTGTCGCCGGACCTGGCTCCCGTGTCCGACTACTGA

Function

symbol description
b4galt5 Predicted to enable UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within several processes, including otolith development; positive regulation of BMP signaling pathway; and proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in hypoblast; otic vesicle; polster; and trunk. Orthologous to several human genes including B4GALT6 (beta-1,4-galactosyltransferase 6).

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 5

GO: NA

KEGG:

id description
K09905 B4GALT5; beta-1,4-galactosyltransferase 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008108 True 1071 mRNA 0.56 8 42530081 42537841

Neighbor

gene id symbol gene type direction distance location
AMCG00008103 NA coding downstream 175449 42331139 ~ 42354632 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 199603 42310632 ~ 42330478 (-)
AMCG00008101 NA coding downstream 230748 42295442 ~ 42299333 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding downstream 262290 42249646 ~ 42267791 (-)
AMCG00008091 NA coding downstream 532397 41977687 ~ 41997684 (-)
AMCG00008112 NA coding upstream 160296 42698137 ~ 42704412 (-)
AMCG00008114 NA coding upstream 227152 42764993 ~ 42808108 (-)
AMCG00008118 dhx35,LOC102790768 coding upstream 477515 43015356 ~ 43028990 (-)
AMCG00008117 NA coding upstream 492015 43029856 ~ 43036431 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding upstream 501557 43039398 ~ 43043630 (-)
G28512 NA non-coding downstream 29085 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 53091 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 227984 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 239836 42283959 ~ 42290245 (-)
G28410 NA non-coding downstream 437883 42091457 ~ 42092198 (-)
G28900 NA non-coding upstream 1325766 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 1356338 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 1458277 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1949369 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 2128502 44666343 ~ 44666577 (-)
AMCG00008104 samd10 other downstream 129007 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 440588 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 680127 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 1117857 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 1328256 41199489 ~ 41201825 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 223163 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 559270 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 972919 43510760 ~ 43583413 (-)
G28970 NA other upstream 1880033 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2611660 45149501 ~ 45228504 (-)

Expression


Co-expression Network