AMCG00008111


Basic Information

Item Value
gene id AMCG00008111
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42704984 ~ 42713579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008111
GCACCTTACCTTCGCAATCTGCTGGAAATCCCCGCACTCGCTCTGCGCATGCGTGACGCGCCGTCCTAGCCCGACGTAAGGAGCGGGGAGGAGCAGCGCGGCGGCAGTGCATGCATAATTATCACGACGGATCTAATTCGCATACCATTAAAAACGCGCAACTTGTTTGTGTGGTTAGCCCGTGTGTGCTGCCTGGCCTCACCTTGAATCCTGCATCTTTAAAGGCTCCACTGTGGTATTTTCACGGATTGTATTTATTACGATATTTACAATCCGGATCCGAGTAAacaagtcattattattattatcccctGACACCAGGcaatatgcatgcatgcacactatAGCTCCCATCCGCATATGCATCCGACGTTACCGATCATTTAGCCATACTTGTGCAGTCCCATCTTTTTTAGGATCTGAACCATTTCGCTCCTCCTACAGCAGGTTCGGCGTTATGACGTTATGTCCTCGGTAGACTTGGACAGCCTACACGGAAAGACAGTTTGTAAAGGAGCCGGCTGTGCAAGAAATGGCGATGTTTGGGAGCCTGGATGTGGCATTTAAGAAGAAGAAAGCCGAGGATGCGGAGAGGGACCTGTCCGAGTTCGTGTGCCCTGTTTGTCTGGAGATATTTGACCTTCCCGTGACAACACAGTGCGGACACACGTTCTGCAACAGCTGTTTGCAGGAGTGCCTGCGCCCCCAGAAGCCCGTGTGTGCCGTGTGTCGGACAGCTCTCAGCAAGTGGAATATGGCCGTGGAGTTGGAGAAACTCATCCACAGCTCGCTGGGGTCCTGCAAAGGCTGCCACGCAGagGTGAGTCTGTCTCAGATGAGGAGTCACACAGCTGTCTGCCCCAAGTATCAGGAATACATTGACGAGGGTGTGAAGACTACTGCGAAATCTCAGCCCCCTGTGGTCAGCTCTGTGCCAAATCGTTACACGTTCACCTGCCCCTACTGCAACTTCCAGAACTTGGATCAGGATGGGCTGGTAGAACACTGCACCTCCCAGCACTCCAGAGACTCGCGCCATGTGGTGTGTCCTATCTGTGCCTCGATGCCCTGGGGAGACCCGAATTACAGGAGTGCCGATTTCTTCCAGCACCTGAAGGTCCGCCACACTTTCTCCTACGACACCTTTGTGGATTTCTCCACAGATGAGCAAGCCATGATACAGGAAGCCCTGCAACGCTCCATGATGGATAACTAGGGAACCACACGAGGGCAGTGCTGAGCCTCTGAGCACCCCATCCTGGTCAAGGTCTTCTAGCTTTTTCCAGGGGAAGCACGAATCATAGTCTACCCATagcacttttcttttaaatattccaGTTCAATCACATTATATCACACCTCCTCCCCctatttttaatagtttagtCTATTGCTAATTAAGGGTGTTTATAATAGACAAActggtttattttgcattgattagGTGAATCCTCTTCGGAGAGAGATTTGTTGTTCCTAATGCCTTGAGTGCTTTTGGGTTTTTGTGATTTCTAGCCGGTCAGATCTGTGATGAGCAACAATCACGCATCTGCCCAATTAATTTTTTAGGGGTActtgcagattaaaaacatttaagatgTGTGTGCGTGGTGGataaccattttaaattaataatatgctGAACTGCTTGATTGGAAAACCTCACATTcgtaatgtaaagaaaatacagaaaataatgacatgACCAAGTCAGTCCAGAAGGTGGCGTCTTCTCCTTGAACACCAGTTTCTCCTCCATCAGCTGCAGACTGAGCGCTGAGCACGTTGTGACCTTATTGGAAACTGCTCTGTCGACACATTGGATTAAGGACCCAGGAAGGGACAatattgctgtatttaaatCCTGCCATCATATCACTCCTACAGATACCTGAATAAGGGGGCAGGGGGAATTATGTTGTTCCATAGCACAGATATTACAGCATCATTTCCTGGCTCATGATATGGTAGCGTTAATACACAGGGGGACACCCTTAAATCCATCAGGGCTTCTCTGAATCCTAAAAACGTGAAGCAACTTTGTCCTGAAGACGGCCAGTCAGTCAGCAGCTATAGGACATCTTAGTTGCCCATTGCTAGCTCAACACACTCCAAAGGTGTTACCTGCTGCTTAGTCTCTTGGAGTAATTATGTGCAGAATAGTACTGTTCAAGGCCTCAACAGAGTTAATTACAGCACAACCTCCAGCATGTGGCGCTGTTGTTCCATTACATGACACTTGATGTCCGCCGCTTCAGAGAAATGCTGCCAACTAAACCAAGCTACTCGCCaaatttaaacaacaaacaaatgaaaacaattgaCCAGTTACAAATTAAGACAATTACTGTCCCCGTGGcttcagattttttgttttttccagattcaccaaatgttaaaaaaacaaaaaaaacaggcatgGCAGTGTGGTACGTTTTAAAggtctgcaaaataaatacatatgattaAATAACAAATAGTAATTGTGTATCTTGGGGGAAAAGTACTGATAATTTGAAAGTTTTATTTCTAATATGAATGCGTCTCATTAAACTTGACCCACCTATTGCTATACATTTATTATCTTCAGATTCTTGAGATTCTCACTTCTGCTGATTTTGGTTGGATAGCTTGCACTTGCAGTTTCAAAGCTCTAGGCTCGCTGTGTGGCTGCTTTTTAGTGTGGAGGATCTCTGTGTACCTCATTTAACAACAGGCCTAGAGGATTGAAGACGGGATATTTCGGGATCCTTAGTGATTTAACTTATTACAGTGCTTCTCATTGAGcaactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatataaacaagtcAGACAAACATAATCTTAGGACAGTGTATTAAAAAGATGTAGGTGTTTATGACTATGAAACAATATCAGATAATTAATTCACACTATACTGCTGTGTTTGCTCACCCTCCTTTCTCTTGAAAAGTGCTTTAATTCACATTTATGTAACTACTCAGGAAATATGGATGTGTCTTAAGGTTCTTCTCTGTTGTGATTTGGATATTTCATGCAGTAGTTCTCGCCATGCATGAGACCTGCTGGCATAAGACAGGAATGGACATGAATCCATCCACATCCACGTTTCCTAAGTGCTTAGAATTACCAACACAAATTAAAGCCTCCTAAGGAGAACGTGAGGAAGGTATGCAAACTGCACCTCAGCATCCATGCAGCCGAGATTAATACAGCTGCGCACGCGACCGAGAGCTTCAGATCCTGCGATGTGCCAGCAGTCTCGCCATGCGCACAACGATACCAAATGGAAGTGGACGGCATGTTGGGATGGGAATGCTTGAGCTGCAATGTTGAGCACTGTTTATTTCCCTCTCCCTGTGCTACTGAAACAAGCCTGtttctaaataattaatcttgTAAATAATTATCACATTTATCATACTTACGGATGGGGAAACTCATTTGGTTGGAAGATACCATCATGTTTTGGTAAGAGCTGGTTTAATGACTTCCCTTGGGTGGGAATTATGTTCCTGATTTGGGGGAAATCCCATTTCTGTGTCAGTATTGCAGAGGGAAGCCAgtaattacatgtaaaaaataataataatttgtaggATTGACCACTTCTGAGCTACCAGACTAACTGTGTAATGGACGAGCTGCTGTCTGTGTTGATGGTGTAGTTGAGAGTAGTACCTATTTTTCTGTATCCCTTTTGTACTTGCTCCCAGCACAAGATGTTCAATAGCACTGCCGACAACTTCCTGAGGATGAAATAAGCCTTCATGTAGCACAGCACTGTCAATACACACTGAGCCTCTTCCACAGCAACTTTTACTAGGCAGTTTGATATGCTCCTTTATGGTGTAATGTTGTAGAGTGTTTCCCTTTCcactatataaataaacagcctaTATCCAATCCACTGTTCTTTCTCCTtaaattgcttgttttttttaatctgctgaTTTAAGAATAGTTTGACTTTAAGCActtcattttcccttctttcATATCTAATATCTTTTAAGATTCTTACCATTAACATCTATGAAATGTCAATCTTCTTTTGGagcaaaaagcagaaatgttcaGCTGATTATAATATGCAAACGTGtgtcagagagaaagacaaaagaaaaagacatgaTTTGCTTCTTTGAGTAATGATTCTGGCTAATATATTGTTTACCCCTAATTTGCAATTGTGTTTTCGTTTTCAACAACATGATCCTGTGCAATCATACTTCACGTTGACCATATCAGCCGATGTCTTTAGCACTTGGCTATTCTGAACACTGTACAAGGGGCACCGATACGCAAAAACAGTCTAtgcatattatatttcataatagttttttttttttttttatcttaataaaaccctttttaaatgtta

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15697 RNF114; E3 ubiquitin-protein ligase RNF114

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008111 True 4402 mRNA 0.43 6 42704984 42713579

Neighbor

gene id symbol gene type direction distance location
AMCG00008113 NA coding upstream 12125 42692026 ~ 42692859 (+)
AMCG00008109 NA coding upstream 47745 42656191 ~ 42657239 (+)
AMCG00008110 slc9a8 coding upstream 125001 42552397 ~ 42579983 (+)
AMCG00008107 NA coding upstream 184634 42509887 ~ 42520350 (+)
AMCG00008105 NA coding upstream 256864 42444636 ~ 42448120 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding downstream 47947 42761526 ~ 42762545 (+)
AMCG00008119 NA coding downstream 298929 43012508 ~ 43018451 (+)
AMCG00008116 NA coding downstream 339089 43052668 ~ 43055685 (+)
AMCG00008121 NA coding downstream 445990 43159569 ~ 43175126 (+)
AMCG00008127 NA coding downstream 505520 43219099 ~ 43223126 (+)
G28548 NA non-coding upstream 82827 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 118316 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 204003 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 518602 42117921 ~ 42186382 (+)
G28416 NA non-coding upstream 594909 42106867 ~ 42110075 (+)
G28637 NA non-coding downstream 395471 43109050 ~ 43120781 (+)
G28678 NA non-coding downstream 464223 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 1180530 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 1340386 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1977962 44691541 ~ 44749908 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 267756 42413632 ~ 42437228 (+)
G28395 NA other upstream 711607 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 1983239 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2457746 40241312 ~ 40247238 (+)
G27974 NA other upstream 2645598 40056632 ~ 40059386 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 392134 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 431226 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 579017 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 2309569 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 2433818 45147397 ~ 45171828 (+)

Expression


Co-expression Network