AMCG00008112


Basic Information

Item Value
gene id AMCG00008112
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42698137 ~ 42704412 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008112
GTGACGGTCTGCGTGATCCAGGCTCGGGCGGGGGTGTGTACCTGTGGACGGGCTGCTCAGAGCCCAGTACCCGCCGATCACAGAGAGAGGGTTGCTGCGCACACGGCTGCCTGCCAATTATTCAATGTgCTGGTGTTACTGTGCAGATGGTCACCCCTCACAAGCCTGCAAATTCTAACACATTTGCGCCAAATATACAATTCCTTGGCATCGTCTCCAGAGTCTCAACATCTACGTGTTCCTAAAATCAGGTTTACACAGGGTTAACAATCATCACAGCACTCGGCTTGGTTTCTTATTCATCAGTGAAATAGCCCTGGATGTAAGTTAATGAAGTAATTGGAGACAGCCAGTGAGATATTCCATGGGCGATATCTGTTTCTGAGATAAATGAAGCACTCGTGTATGCTGCTGTGATGGAAGCTTGGTAGCTCGTCCTTGTGGAACACCCTGGATTGGACCGGCTCTGGGATGTCTCGGGTGGTCTGAGTGAGACCGGGCGACTATGAGAGTCATGCAGTGACCCAGCCTGCTGCCCCTAATGGATCCCAAGCTGCGAGAGGACCTGTTTAAGAAGTATGTTCAGACCCTGGAGTCCCAGCTggaggaagggggaggggggcagcagAAGACGGGGGAGACGGGGCTCCAAGCGGCCGCCACAGCACTGCTCAGTGTGTACCAGGTTGATCCCAACCAACGGTTCCGGCTGGTGCATTTCTACGAGGTGGCGGAAAATGCCCTGCGCACCCTGAGGAGCTCCAGTCTGCAGACCCTGGAGACGGCCTTTTTCACACTAGAGACCGTCTGCAAAAACCTGCTGCTGTACCCCTGGAAGAAAGAGTTCCGCAGCATTAAGACTTTCACCGGCCCCTACGTGTATTACCTGCAGTCTGCCATGTGTGACTCGGACCTGCGCTCCCTCCTGCGCTCCATGGGCTACTCGCGGGAGCAGGAGCTGCAGTTCCACATCCGTGACCACCCAGTGGGTGCCAATCACCTCCGGCAGCTGGCCTTCGAGCTCTTTCTGGCCCGGATGGAGTGCCGTCTGCTCAAGGAGGTTGTGGCGCTGGCAGGTGTGGCGACCTCGGAAGTGGAAGCCGTGGAGATGCGCAGGGTGAGCCGGGAAGATGCCACGGGCTGCGCCGAAGCGCTGCACCAGCGAGAGGTCCTGGCGGGGGAGGTGTCCCGCCTGTCTGTGCGTCAGCCAGAAACAGAGCGGGCCTACCTGAGGAGAACTAGCCGGCCCTCCAAATCGGTGGATGTGACTGATGGCGCGGGGCACTGGCAGCCAGCCAACAAGCCCGTCCTGAAGGCCTCCCTCAGCCTGCGCAAGGAGCCCCTCTTTGTGGATGCGGAGGAAGATTTGCAGGACGAGATCATCCGCCCGAACATATCTCTGCTCTCCGTGGCAGGGCCACCCTACAGTCCAGTGGCAGACTTCTTCCCCGTTCAGCCACCTCCTGCAGAACTACCCCAATCCTACTCCTATCACCTCTCCTCTCTCGATGGGCTTGACATCTACACAGACCGGGGAGGCTATCGCCCAGCGTCCTCCAGATCACAGAATCGGGACCCCAGAGATAGCAGGGAGAACTGGGGGTCAAAGAGCCCCGCTGCCCCCTCAATCGGCATGAAGTGCCAGGGCTGTGGTGTGGGGTGCAGCAGCCTCACCTCCTGCCAGAAGTGCGACATGATCTTGTGTCCCAACTGCCACGCGGTCGACCCTTCCCCTTGCTGTGGACTGCAAGACTTCCCAAAATCCTCCCGGCCCAGTGATGGCTACCTGTCCGCTAAAGAGAAGTTCTCCGTCTACTCGAATGCGCACTCCCAGCTCTCCGAGAAGCCCCTGACCTCCTCGAAGCTTTTTACCAGCAAGCCAAGTTCATCCAACAACAGCAGCATCGGTGGGTCGCGCTGTGGATTTTGTAACAAACCAGGCGCAACTCACACTTGCTTGAATTGCTCCAAGGTGTCTTGTGACAGTTGCATGAACCTCTATGCTAAAGATGTGTGTACCCGCAAGAGCGCGTACCATAACTTTGTGCCCAACCACCAGCTAAACTACAAGTCCAGCTCCATATCACACCTGGTGTATCGGTAAATTGTACAGCAGTTTTCCTGGCAGCTCGTGACATATCAGATGGAAGTCCAACGCTCATATCATCGTGGAATGCCCAACTTCTATCCCCTTCCTCAACTTTGATTTCCCTGCCTTGTAGAACTAAAGACTTTCAGAGCCTTATCCTATATTAATTGTACCTGCTGGGCCAACTTTCCGCTGGTTCGCACATTACTGTCGTGTCACAATTAAAGAACCGTGCGCTAAAAAGACGCTGTCCAGCTGAATCGCAGACCTTCTGTATCTAACCATCTTGTCATGACGTGACCATCTCAATATTCTGCGCACATGGGTCTGGGTTTTCACCCCCCCAACTCTTCTGACATGACACAATCAATTTAGCTATGTGTCTGGTAGGCTTTGAACTGAAAACCACATCAACATATTACActggatttttatttatcttacagTATGCTATGTTGAGCTGACGTAAACAGTCATTTTTGCATTCTTCACTCCTCTGCTTTGATACAAGCTTGAGACCAACCACAGTCTTAAGACTCCCAGATGGCGTTACACTTAGGAACCAAGCAATGGCCAAATGGCACAGAGAGTTACTGTATTGGAAATCCCAGAATAAACTGCAGgatgttattttcctttttaattcaaTGAACAATGTAAGGCTTTTCCGTTCAATCTCTCCTTTTCCCTCAACTGTTGAAACCTCCACTGATAAGAAACCCTTCTTTCTTGGCTGCAGCAGTAATTTCAGTGTACAGGCATCCCGGCAGAAAGGAACTATGGGAACTGTAGTTTTAGTGAGATTTCCTCTTTATTAGAGGGCAGCTAATGTGAGTTTAATTCATTTGAATTGATCCAGTTTGCACCGAGACTCTTTCTTTGAGTTTACGTGCAGCAAAGAAGATGATCTCTTGACTGCTGAGTTGTAGTTTCATATGTTTTTCTGGAAGTGTGTGACATACTGTATCCAGGCAGCTCTCGTAATACTAAGGGCCTTTGTTGCTCTCTGTATAAGAGAACACTGAGATAAATTCTGCAGCTGCTCATTCAGCATCTTTAACGTGAAAACGGAAATACAAATAGTGTCTCTGGCTGAACTAAACCGGCAGAAGCTTCCAATCCAGCGTTCTGACTGACTCGAAGCCACATTTACTGACTCTAAAACTACAGTTCCTGTCgcttttggtttggttttctcTCGCGTTCCCTTCCTGCACCGGCATGCCATCATTTCACCTCTTTTTTCCGTCACCCAGGCTTGCAGTGTTTTATTGTCTAAATAAACCACCCAACAAATAATGAACGGCCACGAACCACACTTCCCGTGAAGACaaatcattattcattattcgaAAAGCTGGAGTTCTGCAGCTTTGAACTAAGGGAGACAGTCTGTAGCGAGGGAGAGAAGACAGTACAGCTCTATGTgatgtaaaaatgcataaactATGCAATGGCAAACAGTGTCTGGAGTGCTGAAGCCTAGCAGAAGATAAACAAGTATACCTTTTAAGTGGGgggttttgattgattttaattccTGTCCTATTGCTCTTTAGAGTTTTTCTTTTACGGTTACAATTTCACAGAGTTTTGGGGTCTCTTAACAGtttatctatttgttttaataaaggggAACTAATTAAACAGATTAGCTTATTTCACGTTGTCCTTGGGTGTGTTCAGGTAGCTTTGTATCATTTTGGAGCATCAGTaaagttatttttctgcattttaagaCTGGTAGATGTGCATACAACCCCTGCGTGGAGACTTGTATCTAGTATTCAATGGGGAGAGggaaaaagtgaataaataaaagtgatcTTAATCGCTTCTGAAAACCTGGTTTACAAAGGCCTGGGGAGAAGTGCAAGTTGTAGTAAATAGTGTTGTCATTGAACAAAAGTGCGATTTCTGAACCTCAAGGGGCTGCGGCCAAACACTGCATCCCTTGATGGGAAGTGCTGTGGAAGCAGCAGCTGGGCCTTGGCACGGACTGCAAGGAAGATGAGATGAGAGATTAGCTCATTTAAGAAGTGGCGGTTTATAAGGAAGAATTATCGTTTCTCATGTTagtcattgtttaaaaaaaaaacggtcTGATGAATTGTGGAATGAAAAAATCCCTTGTAATGACCCAGTTTTAGTCAGTATTTCCCAAACACTTACGCTAATTAAATCCTGCATCCAGAGGCAAAGGTCTTTGTCCAATGCATTGTGGTCCATTTTTGTTTGCTCTGCAGTAGACGGTCATGGACAGAGTAACAAAGCCCTTCACAGGAGATTTTGCATACAAAGAGAGGAGCCAGTAAATGTGTCATGTGCTCCTTCACATCCAGGAGTGCTTTTCATTCAGATGAGTGTGCTTCTTTGATTCCTAATTTCagaagtattttgtttgtggtaTCTTACAGGTATTTAGTGCTGGTGTCGTCTGTATTAGCAGCTTTCGTCTGGCATGGTTTATAGACACGTTCTACCCCAGTGATGCCCCCTCTCTCCCACATCCTCCTTTCACCCATCAGCACCTCAATGTGTATTGTTAAGCAGTGAATGCTCCCTGTGTACAATATTACAATCCTGATTGTTATAGCAGGGTTTATTTTTGGGAAAAATAGCCAAATAATTTGTTGGTAATTCACctgattttataaaataatgccaagaataaa

Function

GO: NA

KEGG:

id description
K17595 SPATA2; spermatogenesis-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008112 True 4764 mRNA 0.48 3 42698137 42704412

Neighbor

gene id symbol gene type direction distance location
AMCG00008108 b4galt5 coding downstream 160296 42530081 ~ 42537841 (-)
AMCG00008103 NA coding downstream 343505 42331139 ~ 42354632 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 367659 42310632 ~ 42330478 (-)
AMCG00008101 NA coding downstream 398804 42295442 ~ 42299333 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding downstream 430346 42249646 ~ 42267791 (-)
AMCG00008114 NA coding upstream 60581 42764993 ~ 42808108 (-)
AMCG00008118 dhx35,LOC102790768 coding upstream 310944 43015356 ~ 43028990 (-)
AMCG00008117 NA coding upstream 325444 43029856 ~ 43036431 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding upstream 334986 43039398 ~ 43043630 (-)
AMCG00008125 plcg1 coding upstream 358422 43062834 ~ 43083682 (-)
G28532 NA non-coding downstream 103277 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 197141 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 221147 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 396040 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 407892 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 1159195 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 1189767 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 1291706 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1782798 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1961931 44666343 ~ 44666577 (-)
AMCG00008104 samd10 other downstream 297063 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 608644 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 848183 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 1285913 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 1496312 41199489 ~ 41201825 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 56592 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 392699 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 806348 43510760 ~ 43583413 (-)
G28970 NA other upstream 1713462 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2445089 45149501 ~ 45228504 (-)

Expression


Co-expression Network