AMCG00008117


Basic Information

Item Value
gene id AMCG00008117
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43029856 ~ 43036431 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008117
GGCCGTTGCGCTGTGTCTACAGTGGGCTGCCCTGTGAGAGGAGGAAAGCCGGCTTGTTTGCCTACAAATTCAAACTGCGAGCCAATGAGCTGCAGCCTGCGGCCGGCCGAGCTGACGGGACCGGAGTCCCAGCTTCCCTCAGCCAATGCCGGCGGGAGAGGGACGGGTTTGTTTGAGTTTAAAATgccatatacatacacacacacacacaaaagagagTCCAGCTCGGCGTCGGGAGAGCAGTTAGTGCACGCCTGTCGGCATTACTGTAGTGGCGGCACAGGGTGAGCATGGCATTGTCGCAGTGCCTGGATGACTTCCCCTTCCCTGCCCTGTCCCCGGGTAGGCACCATCTCAAAGGCAGGGAGCTGTACAAGGAGACGCACCGGCTGGCGCTGGAGGAGCTGATCGTCGGGGGGAGGGAGTCTTACATCGGCTTCTTAAAGACCGAGAGGATCCCCGGCTTCCTTTCCGAGGAAGAAATTGGACTGATTACGGACTCGGTCGTGGTCCCGAAGAGCGTGTCGCTGAGCGGGGATGAAGCCGGCGTAGACCAGTCCGTGAGCAGCTCCATGGACTGCTCCTCCGTCACCTACTTCCCCGAGGTCTCGGACGTGGAGCCGCCGCTGCTGGAGATCGGTTGGCCGGCCTTCACCACCGGCTCCTATCGGGGAGTCACTCGGGCTGTGGCTCACTTCCAGCCCAGCTACGGGGACTGCATTTACAGCTGCAAGGAGGCGGCGAGGCGAATGATCAAGAGCGCAAAAGAGTTGATTGCCCTGGTAACAGACTCCCTAACTGACCTAGACATATTTCAAGATCTTCATGAGGCCTGCACCAAACGCAAGCTCCCCGTCTACATCCTGCTGGACCAGTCCTCTGTGCCTGCTTTCCTCCAGATGTGTAAGACCCTGGATATCCAGCTGGAGGATCTGCAACAAATGAGGGTGCGGACCCTCACAGGAGCCACATACTTTACACGATCTGGTGCAAAGATTGTTGGAAAAGTTCATGAGAGATTCATGTTGATTGATGGAAACAGGGTAGCCACAGGCTCTTACAGGTTTAACTGGACAGATGGCAAGCTGAACAGCAGCAACCTGATCGAGCTGTCAGGCCAAATCTCGGAGACCTTTGACGAAGAGTTCAGAATCCTGTACGCTGAATCCAAACCACTCAATCCCAAGGCACTCTATAGTCAAAGGAACAGTGGGATCTATGACCATCTCTTCCTCAAGGTGGCCCCAGGCCCAGAGCCACCCAAACCACATCTCGTGGAGCCTAGCATATTATCCAGCACACCCAAAAGAGCACAAACTATATCTGTGCTTCCTGGAGTTGATGACGGGGAGCTGCTTCCCAAAGACAGCCGGATGTCAGAAGCCTCCACCATTGGAGAGGACTGGTTGGAGAAAGACCACGTGGAGGAGGTCCTCACTGCTCATGAGGCCCCAACGGGTCAGGACACTGCCTTGCCTGTTTTAACAAAGGAGACAGGGAGTGAGGAGTCTTGTGTGCCCTTGACCTGCCATACTTCCACACAGACCAACATTCAGGTGGTAGAAAGTAGCATGCAGACTGATGTGGCTGTTCAGGAGACTGAAACCACCTTTACTACTTCTGCAACCCAAACAGCCAGCCAGGACTTGGTCTCATCCATGTTAGATTCCCAGATCTCCACTCTTCCCAAGGAACAATCCAGGGCCTTTAAACGGGCTCCAGCAAATCACTCTCCTTCATCCCCTGATGGCTCCCTGAGGGACTGCTTCAACAAGCTGACCAAGGAGCGCCAGTATCACTACTCCACCATCCGCTCCAAACTAGACCATATGGTGGCACTCTTGTCCCATCGGCGGGAGCTGGTGGACCTCACCAACCTGGCCTTCAACCCTGGCCATTATAAACTCAGGAAGGCCCATGAGCAGAGAGAGCAAAATCAGCTGATGCGGAGGGAGGCTCCTCGGCTGGTCCCTTTGATAAGGTCCAGATGCCTTAAGTGAAGGAGTCCTTCTCACAGAAAGATGGACAAAAACTGTGCCTGCATTCTCACCAGAACATTGCAAAAAAGCATCTGCTgatttatatatgatttataacTTCATAAATGGTCACTTAACACTTCTTGATAGAAATATAGAAAGGAGTCTTTTACTACTTAAAGGGAAACTTtggtattttgcattttagcctgatttcactcacccagagtcataggaatgcatggaaacctttttttgtttttctgtgtctcCAGTTTGAACGAATTAgaattttgcatttagttagtATAACAGAACTGCTGGATGCAAATGGTCGCAAATcactgactctcaaaagccaACTAATAGATCTTATAACTACTGCAAAGTTGGCCGTTTGTCATTTGTTGTGTAACAATACTATAAATAGTTCaataaattcattaatttactgaTAATTGTAAGAAATTAGTTTTCACATAATTGCTTATTGACAGACTACTTTTGGTTCTGCCTGTGCTCTCTGTGATTTCATTCACGCACAGCAATCTATTAGCTGACTTTTGAGAGTCAGCTTTTTGCGATCATTTGCGTCTAAGCTAACGAAATGCAAAATTTGAATTCCTTCAAACTGTATACACAGaccttaaaaatggtttccatgCATTCGTATGCTCTGGGTGAGTAGGAAATCAGGCTAAAGtgccaaaataccaaagtatccCTTCAAATTTCACAGTTGCTTTTAAATTGCGGAAAGATAATTTGTAAGTTAATAGTTCAACCTGTGCTGAATTGAGTGTTGTCCATAATGTAGCtgaatatatactttttaacaTTAAAGGATACTTAATGTTTTAGACTTTCATAACACTTGATTCAATAATAAGGAATTTCTCTGAAAGTGCAATGGAATGAAAGAGATAAATGAATGTTGTACATCTATTTCCCAACCTCCCAACAATATTGGGAAGCTATAGTTTACTGTCAATGGAAATTAGCAACTACCTTGTGGTTTACATCTGTACATTAACACTTTGCTGATATAGAACCGAGCACTGTCAGGAGGTTACCGTGAATTAATGAAATGTTCCAGTTTTGGACAATTGTTTTACTACGTTCTTCACTACTGCCAGCTTGGATTGTATATTGATATAAATCAGAATCTATTAACACAATGTAATCATTAAAAGtctcaaatattaaattatgctGCTAACAACTTAGGCAACCAAGTCAGGGTTTCCCTGGACTAGTGGATCATCGAGTGGAGGTGCGGGGATAGGGTAGTCGTAGCGAATGAGAAAATGGGGGGTTGGGTGGGGGAGTGATGAACGAGAGTAGGGGGCAGAGCTTGTGTGCTtgggttgttatttttttttggctgcCCCCCAGTATAATGGTAGGGGAAACACTGGaagttaagaaaaatatattggtttTAATTAGATTTCTGTGAATCGTGATACTACAATCAACACCCAGCTATCGTAAGACATTAATATTTTTCCAATGGCTGATATAAATACTTAGCTCTCATCATGTTCATAAGTTTACTACACCTGCAAAAATTATAGAAGCTCCAAATAATCCTGTGTAGTTGTCATATTGGCGGTTTTAtaagcatttcatttcacagtGGACGATATCTACTCTTGACTTAACTACAACTAGAATGTTGGCTTTTTAGGGGAAAATGCTGTGAGCCTTACCACCAGTTCATCTCTTTCAATGAATGTCTCCAAATGATCCATCCTGCACACCACAGAAATAAAGGCTGCCCGACAGAGAGGGTTTAAGCAGTGCTTAAATTGTTCTAAGAATTGTCACCAGGGAACCGATTTTCTATGTAGATATTAACCTCATGTTTTGTCGCCAggtcatttaattttgtttttttatttttgtttggttaattATAAACTTTATTTGCAAAAGCTCAGATCACAGGTTTACATGACACTTGAGTGAATTCACTGCTTCCTTGTTATGATAAAGGAAAAAAGGTTGATCCGTCTttctggtttcattttaaattctcctcagttgtgtttttttgggggtgttaaattgaaataaatcttATGCACCATGGGTTGTCAGATTGGTGCAGTAaacttgtttgtcttttgtttctttgggtGTGGtgtcttcatattttttcatggaataaaataatcatttatcTGTGAGTTGACATTTGTCTGATTTATACAAACATTTCGGCAGCATGAATCCCAACTCAAGAAAATTATTTAGAAGTTTGTTTGTCATTGTCTTAGTCTAGAAAAGGT

Function

GO: NA

KEGG:

id description
K16805 FAM83D, CHICA; protein FAM83D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008117 True 4273 mRNA 0.45 4 43029856 43036431

Neighbor

gene id symbol gene type direction distance location
AMCG00008118 dhx35,LOC102790768 coding downstream 866 43015356 ~ 43028990 (-)
AMCG00008114 NA coding downstream 221748 42764993 ~ 42808108 (-)
AMCG00008112 NA coding downstream 325444 42698137 ~ 42704412 (-)
AMCG00008108 b4galt5 coding downstream 492015 42530081 ~ 42537841 (-)
AMCG00008103 NA coding downstream 675224 42331139 ~ 42354632 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding upstream 2967 43039398 ~ 43043630 (-)
AMCG00008125 plcg1 coding upstream 26403 43062834 ~ 43083682 (-)
AMCG00008123 NA coding upstream 89323 43125754 ~ 43131680 (-)
AMCG00008126 NA coding upstream 97319 43133750 ~ 43143331 (-)
AMCG00008129 NA coding upstream 141305 43177736 ~ 43192496 (-)
G28532 NA non-coding downstream 434996 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 528860 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 552866 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 727759 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 739611 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 827176 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 857748 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 959687 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1450779 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1629912 44666343 ~ 44666577 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 265202 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 628782 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 940363 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 1179902 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 1617632 41405791 ~ 41412224 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 60680 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 474329 43510760 ~ 43583413 (-)
G28970 NA other upstream 1381443 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2113070 45149501 ~ 45228504 (-)
G29301 NA other upstream 3014264 46050695 ~ 46054346 (-)

Expression


Co-expression Network