AMCG00008118 (dhx35,LOC102790768)


Basic Information

Item Value
gene id AMCG00008118
gene name dhx35,LOC102790768
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43015356 ~ 43028990 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008118
AGATGACGTATGAACCAAGATGGCGGCGCCCCTTTCCACAATGAAGTTTTGGAAACCCGGATCGGAAGCCCCGGGAGTGGGAGAGGAGCGTGAGCTGTCCTCTGAGGTCGGGGGCTCTCCTGTCATCTATAACCCTCACGCATCCCTGTCCATCGAGAAACAGAGGCAGAAGCTTCCGGTGTTCAAGCACAGAAACCACATCCTGTACCTGGTGGAGAGCTACCAGACGGTTGTGATCGTGGGAGAGACTGGCTCTGGCAAGAGCACCCAGATTCCACAGTACCTGCTGGAGGCTGGATGGGCTGCAGAGGGCAAGGTGATAGGGGTGACCCAGCCTCGAAGGGTCGCTGCCATTTCGGTGGCCAGTCGGGTGGCTGAGGAGCGAGGGGCGTTGCTGGGCCATGAGGTTGGCTACACAATCCGGTTCGATGACTGCTCGGACCCCCATGCCACACGCATCAAGTTCCTGACTGATGGAATGCTGGTGAGAGAAATGATGGCAGACCCCCTCCTAAAGAAATACAGTGTTCTGATCCTGGATGAGGCCCATGAGCGAACACTCAACACTGACATCGCTATTGGCCTGCTCAAGAAGAAATTTCAAGAATTTTTTAACCTGAATGAGTCTGGCGACCCCAGCAAGGACACCTGTGGGATCCTGACTGTGGAAGGGAGAACTTACCCAGTGGATGTCTTCTACACTGTGAGCCCTGTTCCTGACTATGTGAAAGCCACCGTGGAGACAGTGCTGAAGATTCATGAGACTGAAGGAGATGGAGATGTTCTTGCATTCCTCACTGGACAGgACGAGGTGGAGACAGTGGTGTCTCTGCTGGTGGAACAGGCGAGGGCTCTGTCCCGGTTCGGGATGAAGAAGCACCTCCGTGTGCTGCCCATGTATGCAGGCCTGCCCTACACCGAGCAGATGAAGGTTTTTGAGAGAGTGCCCCCTACAGTGCGGAAGgtGGTTGTAGCTACTAATATTGCGGAGACGTCCATCACAATCAACGGGATTGTTTTTGTGATCGACTGCGCGTTTGTGAAGCTGAGGGCCTACAACCCCAAAACGGCCATCGAGTCACTCGTGGTGACCCCCATCTCGAAGGCCTCAGCCACCCAGAGAGCGGGCAGAGGTGGCCGCAACAGGTCTGGAAAGTGCTTTCGGCTGTACACGGAGGAAGACTTTGAAAAGCTGCCCTCGATGACAGTCCCAGAGATGCAGCGCACAAACCTGGCCCCAGTGATCCTGCAGCTGAAGGCCTTGGGCATCGACAATGTCCTGAGGTTCAACTTCCTTTCTCCGCCTCCTGCCCAGTCCATGGTTCAAGCCTTGGAGCTCCTGTATGCGCTTGGAGGGCTAGATCAGTACGGACGCCTCACTGAGCCCATGGGGATTCGAATGGCAGAATTCCCCCTCAGCCCCATGTTTGCCAAGATGCTGCTGGATTCAGGGAGTTTTGGCTGCTCCAAAGAGATCGTGAGCATCGCTGCCATGATGCAAATCCAGAACGTGTTTGTGAACCCACCCAATCAGAAGAAGGCGGCTGCCAGAGAACACAGGAAGTTTGCTGTGGCCGAAGGAGACCACCTCACTATGCTGAACGTGTATGAAGCCTTTATCAAGcaTCAGAAGAGCTCCCAGTGGTGCCAGGAGCACTTCCTCAACTACAAGGGCCTCCTGCGTGCTGTGACTGTGAGGGAGCAGCTCCGAAGGTTGATGGCCAAGTTCAAGGTGCCCAGGACCTCCAGTGAAGGGGACCCTGATGTTATCCTGAAATGTATCGTCTCTGGGTTCTTTGCAAATGCAGCCAGACTTCACCATTCGGGCTCCTACAGgactCTTCGAGATGATCGTGAGCTGCACATTCATCCCACTTCTGTCTTATATGCCGAGAAGCCTCCTAAATGGGTGGTTTTCAATGAGGTGGTCCAGACGTCCAAGTATTTCATGCGTGATGTGACTGCGATCGAGTCCTCCTGGCTGcaTTCGTCAATGGGCAGCAAGCGGGCAAAGGTGACCTGAGCAGATAATTGTGTCCTGGTAACCCCACACTGGAACCCACTGCAGGGTAAACCTTTGGAGATTGTACTGGTTAATGCTTTAACCACAAAATGAATGCCACAGCAAAGCTGCACAATGGAAGAGAGGATCAGTGTGGGGGTATCAGGGCAAGAAAACCAAAGAGGATCACTCCCCCAATGAGCTCCATCCTTGTACATAtagatatgtattatattgatttCCCATTCCTCTTCACCTGTATATAGAGACCAAATAAATGGAAGTCTGgctgacacttttttttttttaacaaggcCAAAATGTTTGTCAGCTGGAcctaagtttattatttatttttttattgtttggagTTATAGATGGCACTGTACATAGAGAGAAATGTCACACTGATTCACACTCGAGAGATCCtgaaatggatttgaaaagcaGGTTTGACTGAAGAGCTCAAGTTTTCTAGCCTCAAATCTTGTTTTGCCACCCTAGTGGTTGGGGGTCTGTGGTTTACTACAGTTAAAGGCAAAGGAAGAGGTCCAGAGCACTAAAATCtgcatttaatcattttcaaagtttttatttaggAATTTCGGTCTCTGCTCTATAGGTTACTCATAGGTTTTTATAGCAGAATGTCTGTTTCCCAATTTTAAAGATTATgcactggtttcacagacccaggaAAGCACTAGACTTTGACTACCTAATGTTATTTTGTCAGTTATTCCAGGACTAGTGCCAACGGAGGTCTGTGATACCAGCTGCCTGTGGCCTTTAGGATGTTACTCAATGTGCCAAATTGATacagtcttgtttttatttaaatggaaacaagGTTGTGCCAAACAATAACCAATCAATCCTCTTTGTACTTTTGTCTTGAGAAAATGGATTTCCATGTAGATGTCTCTCCTGTATTTCTCTTTCAATATGAGAAAGTCTTCATTAGTCAGTCTTACTGTTGATCCCATATGGAAAAGTCTAGaagtaaaacatatattttaaggCTTACTATAAAGTATGACATGACAACTattcttttttaacaaaacattttcctcTTGTGTCctacttttgtatttaaagcACCACTTTTaacctgattttgttttgtcatgtgATCTTTCTTTAAGCACATTAGCACAAAAAAATCTTCAAATGCATTAACTTTTAATATTCATACAATTTTTATTCCAATACATGTGTGTTAGTCTGGATGACCTCTGACTTTGTGTTTAGTTTGGTTGGCATGTGTAGTATTTTCACAAAAAGTCAAATGGCTACCCAgtggaaaaatgtaaaagatgaATACTTCACTTTATATGTATTGATAggttttcaatttgtatttcaagTATTCAGTTttgccacaaaaataaaattaaaataaacagtggaaTATAAAATAAGACATGGAATTGTAGAAGAAATTAATGCATATTTTGACTTTTTCCATTTGGTAGCCAAGTGTATTGTCAAGTTGAAGAAAGAGAGTTAAATGCAGAGCCCATTAATTCCAGTGAAACctgctttcatttcagtaaGGTTACCTTTATAACTTTATTGCTAAATGTCTGCATGGTTATGTGTTGGTTTATTTCCTCTAGTAGGCTAGATTTAGCTGTTGCTGAATACCATGTGAGTACTAAGATAATGTGcaaataaatctgaatattCTTGCATGTTAAAATTTAAACAATGATAACTAACACCCGATGATCACTAGTTTAAGTAGTAGACTGCAAGAAGATCCACATTCCTGTCTCCTTTAAACTGTACTCGGCCAAATTCTCTTCCAAGTTCTGAAGTCCCCTTCTGTAAAACATGATGCATCTCCAGTGACTGATCCGACACATcttccaataaatacatacgaTCATgcataccaaaacaaaaaa

Function

symbol description
dhx35 Predicted to enable RNA binding activity. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human DHX35 (DEAH-box helicase 35).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DHX35

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13117 DHX35; ATP-dependent RNA helicase DDX35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008118 True 3915 mRNA 0.45 21 43015356 43028990

Neighbor

gene id symbol gene type direction distance location
AMCG00008114 NA coding downstream 207248 42764993 ~ 42808108 (-)
AMCG00008112 NA coding downstream 310944 42698137 ~ 42704412 (-)
AMCG00008108 b4galt5 coding downstream 477515 42530081 ~ 42537841 (-)
AMCG00008103 NA coding downstream 660724 42331139 ~ 42354632 (-)
AMCG00008100 uckl1b,uckl1,LOC108411658,LOC107723126 coding downstream 684878 42310632 ~ 42330478 (-)
AMCG00008117 NA coding upstream 866 43029856 ~ 43036431 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding upstream 10408 43039398 ~ 43043630 (-)
AMCG00008125 plcg1 coding upstream 33844 43062834 ~ 43083682 (-)
AMCG00008123 NA coding upstream 96764 43125754 ~ 43131680 (-)
AMCG00008126 NA coding upstream 104760 43133750 ~ 43143331 (-)
G28532 NA non-coding downstream 420496 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 514360 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 538366 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 713259 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 725111 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 834617 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 865189 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 967128 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1458220 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1637353 44666343 ~ 44666577 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 250702 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 614282 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 925863 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 1165402 41846933 ~ 41849954 (-)
AMCG00008076 NA other downstream 1603132 41405791 ~ 41412224 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 68121 43097111 ~ 43120164 (-)
AMCG00008144 phf20,LOC107727854 other upstream 481770 43510760 ~ 43583413 (-)
G28970 NA other upstream 1388884 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 2120511 45149501 ~ 45228504 (-)
G29301 NA other upstream 3021705 46050695 ~ 46054346 (-)

Expression


Co-expression Network