AMCG00008120


Basic Information

Item Value
gene id AMCG00008120
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43144805 ~ 43156072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008120
AGCTGATCCAAAATAtttggtgtatgtgtgtgtgatggctGCAACCAGAACCTCTTATTAAAAAGCAGGGCTTGCAACTGAAAGCGGATTTATCTGGACGTCGCTGCACAGCAGCAGAGTTGCTACTATTTTACGGgttggggaaaaaagaggtTTTCAAAGAATTGCTACAGTACCAAATGATCCCAGATGCATTAGGCTACTTCTCGTGATtacaaatacatagataaatgaGCAATTGCAGTTTCACCCAGGTTAGTTAGAAGGTATAGGCTGGTATAGCTCATTTGCGGCCCTACATTGGTGAAGAGACGCAAGATTTAATGTTCACGCCTGCCGCTGACGCCGTGGCCGGGTACCCCAGTGGGAACATGGCAGAGAAGGATGCCAGCCAGGAAACGACGCTGGGCAGTGCCTACTCGCCGGTGGATTACATGAGCATCACAAGCTTCCCCCGCCTGCCAGAGGACGATGCCCTCTCCGGGGAGAACAACATCAAAACCCGCAAAGAAGAGGACAACTTTCTCAGTGAGCAGGATACCGACCCAGATCTGTTCCTGAAATCTGCTCGGCTGCAGCGGCTGCCCTCATCCTCCTCAGAGCTGGGCAGCCAGGATGTGTCCCCCCTGCGTGAGACGCACCGCGACCCCCTGGCTGGGGACTGCAGCTGCCGCCAGGACGGTCTTACCATCATCATCACAGCCTGCCTGACCTTCGCTACTGGCGTCACGATCTTCAATCAGGGTGCAGTGGTGACAGACGTGGGGCACTGCACCTCTGTTGGAGCAGAAGTGCTGAGCAAGCATGGCTCCTCTGTAGATGCAGCCATAGCAGCAGTCCTCTGTTTGGGCATCATCAATCCTCACATGTCTGGCATTGGGGGGGGTGGTGTGATGCTGGTTCATGACATTCGGAAAAACGAAAGCCGTGTGATCGACTTCCAAGAGACAGCGCCCTCTGCCATCCAGGAGGACatgtttcaatttaatttggagCAGAAgCCTGGCCTGCTGGTTGGTGTACCTGGCATGCTCAGTGGAATGCACCAGGCTCATCAGTTGTATGGACGAATGCCATGGGAAGAGTTGATAACCATAGCAGCGGATGTTGCAAGGAATGGATTTAATGTGACCCACGACCTGGCGGAAGCTGTGTCTAAAGTGAAAGATCAGAACGTATCAGACAGTTTCCGGGATATCTTCCTTCGTGATGGACAGCTGCTCCCAGGCTTATTTATGAGGCGCTTAGACCTGGCGGCCATCTTGGACTTGATTGCAACCAATGGAATCTCAGAGTTTTACAGCAGCAATCTCACCCAGGAAATGGTGCAAGCAAGAGGAGGGGTTCTAAACGAAGAAGATTTCAGTAACTACAGCACAGTATTACAGCAGCCCGTGGAGGGCCTATATCAGGGCCATCAGATCATAACTACACCCCCTCCGCATGCCGGGGCTGCCTTGATCACGGCCCTCAATATCCTGGAAGGATTCAACATCACCAGCCAGGTCCCCAGAAACAGCACCTACCACTGGATGGCAGAGTCCCTGAAAATTGCTTTAGCTTTAGCCAGCAGCTTGGGCGACCCCTTTTATGACCCATCTGTATCTGAGGCTCTGTCGCTGATGTTAAGCAAGTCAGAGGCTGCTTCTTATCGGCAAATGATCAATGACTCTCACACCTTCTCTCCCGGTCACTACGTTACTCCTTTCTATTCTCTGGAGCCTGAACCAGCCTCCAGCCAAGTTGTGGTCATGGGATCGGATGACTTCATTGTCTCTGTCATAAGCTCCCTGAATCAACCTTTTGGAAGTGGGATTATGACTCCTTCTGGGATACTCCTTAACAGCCAAATGCGTGACTTCTCTCTGAACACAACCCAGAGCTCTGTTTCGCTTCCTCTGCGGAACAGTATTCAGCCTGGGAAGAGGCCCTTGTCCTTCCTGACACCCACTGTAGTGAGGCCATCTCTGGGGCTCTGTGGCACCTATCTGTCAGTAGGGGGCTCAAATGGAGACAGAATGATCAGCAGTATTGCCCAGGTTATAATGAACGTCTTATCCTTCCACAAGAACCTGAGTGACAGCCTGACATTTGGAAGGCTTCATCCTCAGCTTCAGCCTAACATTCTCCTAGTGGACAATGAGTTTCCTGAGGAAGATATAGAGGCCCTGCGCTTGAAAGACCACCATGTGGAGAGGGTAGGGGTCCTGTCGGTGGTGCAAGGGACCAGGAGAACCAATGACCTCATCATCGGGGTGAAGGACCCCCGCTGTCCAGATGCATCAGCAGTAACAACATCCTAGCCGGCTGAGAGATTGAAAAAGTGACAGAGTGACAGAAAGATGGAGGGTTTCCTAACCTGGAAGGGTGACATGTGAGGGGGGTTTGAGGAGGGGCTAGCTGAGATTACCTAAAAGTGAAGACCTGTGAGCAGCTCAACATGTATTGTATATTCTCTCCACAGGTTGCATTCACAGGGCATGTTGCACACCAGTATGATGTACGCTGTATTGTTTAGTCTAAAACACGCACTCGCTACACTGTATATACCACTGAAAACCAATGATGCCCCTCTCTAAAGACTAACATGAACCCCTTCCCCACCCCCTGCTTCCCTCTCACCCTGTATTGAGGGGAGAAGTCATGTGCTGCTGAAATGTTCCTGCCATCAGCCCTGCCACTATAATAGCTCTATATAATATTAGTGCACTGCCTTGTCTGaagtggattttattttcctgattcAAAAGGGAAGTttgaaaatgcatataaatgatATTTACATAAGGGGCTCAAAAAGTCCCACTGTGGAAGTTGATATGACTGTGTCTTGACATTTGCTAAAAGTCCTGTCCCATTACTAGTACCCTTCCCTGAGATGCACCTTTGGGATGATCTTGATCAAGTTAATGGTGGAACTGAATACATGCATATTCAGCCACTGTGTTGTGACCAATGACCACAAGGATgctatgtatgtaaatgttcaTCTTCTGAAGCTGTTGGACACCTAGGTTTCCATTTTACCATCCAAGTCTGAGGCTAACGTGCAAAGGAGTGAAGGTTCTGTATGCCTGGCACTCTAAATTCTTTGATGGAGATAGAGAAAGACTTACGCTTGATTCTAGATCAGGCACTGAAAGATTTTATAAGGGTTAAAGATCTTGGGGAAAATAAAGggtttacagcatttaaatacagaatatgttacattgttttgtttttttaatttatattatttgttttaaatcttccttcatatttgatttaatctgcaCTATTAAATTCCTGTCCTGATATAGGGGAATAGGGACATATatgaagttttgttttttgattttgttttttcttaatttatttttttaaataagtaattagtGGTTTGTACTTGAAATACAGGTTTGTGATGGGAAGTCCTGATTAAGCCTTAAAGATTGATTCTGAGGTATAATTGTTTGGCTTTTGATCACAAAGTAAGCTTTTTCTGTAAGGCTGTTTACTAGGCTTTTGTAATAACAGCATTAGGCTGTTCCTAGCCCCCAGCGATGGGAcaatgttgtatgtatgtacactacTATTTCCTGTTCATGTTGTACTATTCTCCAATCAGTCTTAAGGcctagaaaatgtaaataacggAATGTATCAATGGGGGGAGGGGATGATTTTGAAGAAATTGACTCATAGTTTAATGTACCTACTCTTCTGAAGGATTTTGTGGGTCTTTGCAGTATAATATACACTGCCTAATCAGAATCTATACCTATATGAATAATAGGTGAAAAACAACTAGCagaacactttttaattttagtggTTATTGTGAGTGCtactatattgtatttgttttaccttcTCATTATGCTTAAGGCATAAACTTAATGTCACTAAGCTATTTTTTTATACCACAGAATGGAATATTGGTGTTCCGTTTTTGTGTAGTATGGTCATGTTGTGtttcaacttttgttttccCAATTTTATGAATTTTCTTGATAAACCTGACGCTCAAGCAGTTCATTTTTGTGAACCAGGATATGCTGGTTTTACTGAAAACATCATCTttctttgttgtgttacaaaagaaaaaataatgctgAGGATAACCTATAAATTATCAGCAACCTACAAGTTTAGAGACTCGACAAGTAGTACTGTAGAATtgatgagaagaaaaaacatgacaatgagtgCTGTAACTGTGATAACAGACAGTCTTACAGTAATAGAGATGGTTATATGGGACATGTAATTCTATTCATTTTCAGCTCTAGCAATTCAGATATAAGTTACTTATTTTTAGCATATTTCTCAAGAAAATATAGTAAATTCCAAAGTGGTTGATAAGTGAAGTTTCAGCTTGCTTACTAGCAATCAGTTTATGTCTGCTGTCCACACCAATGAAATCTATGTGATTCAATTGAGAAACTACTCTGGATTAAGCAACACTTAATTCAGCTCTAAAGCAGGCAGggacaacataaataaaaccaaatagtCTTGTTAACATTTAGGAAGATTTACCTTGGCAAATATTCCTCATATTGCTTAGCCTTCACTGTAAGAATGTCTGAATCAACAATACCCTTTCCAACTCTGTTCATTGGGAGTCCTActatccatttaaaatgtgatccagatatatatatatgaaacctGTTCCCTTTAAATAGTTTGCctttgatttatataaatatagaatacattttgcaaaggtggaaaaaaaatgaaaatcactaTTAAAATGTTAGCACTGTTGTTTGCCTAGCCTATCACTTTGCACAATACTACTGTGTCTTGTTATCAGTCAGACAGATGGAAAGTTGTGTACATAGAAAAATGAAGctgactgaattaaaatgtgtccATGTACTTTTTTTCTGATGTTACTAGTTTGTTTGCAGTGGAAGGTAATGAACCTTAGATTCATGCAACTGGatgaagctttattttttaaataaagctgacactttaaaatgaattctgtcatatttaattaatgtttagcAAAGATACATGTGGTTGCCAACAGCTATTGCTTAATCGACTTGTACAAGGTCTAatggatttataataaaaaaaagtcaaaacagTGAA
>TU35886
CAGATCTTCAATCAGGGTGCAGTGGTGACAGACGTGGGGCACTGCACCTCTGTTGGAGCAGAAGTGCTGAGCAAGCATGGCTCCTCTGTAGATGCAGCCATAGCAGCAGTCCTCTGTTTGGGCATCATCAATCCTCACATGTCTGGCATTGGGGGGGGTGGTGTGATGCTGGTTCATGACATTCGGAAAAACGAAAGCCGTGTGATCGACTTCCAAGAGACAGCGCCCTCTGCCATCCAGGAGGACatgtttcaatttaatttggagCAGAAgCCTGGCCTGCTGGTTGGTGTACCTGGCATGCTCAGTGGAATGCACCAGGCTCATCAGTTGTATGGACGAATGCCATGGGAAGAGTTGATAACCATAGCAGCGGATGTTGCAAGGAATGGATTTAATGTGACCCACGACCTGGCGGAAGCTGTGTCTAAAGTGAAAGATCAGAACGTATCAGACAGTTTCCGGGATATCTTCCTTCGTGATGGACAGCTGCTCCCAGGCTTATTTATGAGGCGCTTAGACCTGGCGGCCATCTTGGACTTGATTGCAACCAATGGAATCTCAGAGTTTTACAGCAGCAATCTCACCCAGGAAATGGTTGCTGAGG

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008120 True 5097 mRNA 0.43 16 43144805 43156072
TU35886 False 607 TUCP 0.51 5 43146773 43149043

Neighbor

gene id symbol gene type direction distance location
AMCG00008116 NA coding upstream 89120 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 126354 43012508 ~ 43018451 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding upstream 382260 42761526 ~ 42762545 (+)
AMCG00008111 NA coding upstream 431226 42704984 ~ 42713579 (+)
AMCG00008113 NA coding upstream 451946 42692026 ~ 42692859 (+)
AMCG00008121 NA coding downstream 3497 43159569 ~ 43175126 (+)
AMCG00008127 NA coding downstream 63027 43219099 ~ 43223126 (+)
AMCG00008130 NA coding downstream 76238 43232310 ~ 43251526 (+)
AMCG00008128 NA coding downstream 96525 43252597 ~ 43259195 (+)
AMCG00008141 NA coding downstream 180869 43336941 ~ 43338038 (+)
G28637 NA non-coding upstream 24024 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 522648 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 558137 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 643824 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 958423 42117921 ~ 42186382 (+)
G28678 NA non-coding downstream 21730 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 738037 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 897893 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1535469 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1612605 44768677 ~ 44816663 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 36563 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 707577 42413632 ~ 42437228 (+)
G28395 NA other upstream 1151428 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2423060 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 2897567 40241312 ~ 40247238 (+)
AMCG00008132 NA other downstream 136524 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1867076 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1991325 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2184502 45340574 ~ 45343914 (+)
G29183 NA other downstream 2284441 45440513 ~ 45441064 (+)

Expression


Co-expression Network