AMCG00008121


Basic Information

Item Value
gene id AMCG00008121
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43159569 ~ 43175126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008121
GGGGAGCAATGGCAGACTGGCAGGGCCAAGGGCAGCCCTTGATGTGGACCGCATCCATGGGCGACCCAGCCACAGAGCTGGACTCTGGGGTGGAGGACGATGACGACCTTGCACACCGGCCAGATCGCCATGATGATGGCTCCACTATCTTCATCGCTTTCCAGGGGAACATGGAGGATGAGGACTTCCAGGAGAAGCTTGACCACATCTTAGACAATAGGATGCAGCCTCGGCGCGTAGAGCCCTGGAACAGCGTGCGTGTCACATTCAACATCCCCCGTGATGCTGCTGACCGGCTGCGTCTGATTGCGCAGAATAACCAGCAGCAGCTGCGAGACCTGGGCATCCTGTCTGTGCAGATAGAAGGAGAAGGTGCTATAAATGTAGCTTTGGGGCAGAACAGAGGTCAAGAGGTCAGAGTCAATGGACCCATAGGGGGACCCAGTCAGATGAGAATGGATGTTGGCTTCCCCATGCAGCCAGGTCCAGGAGCCATACGGATGAACAACCCGGCTGTGTCCATGGTGCCCTCTGGCCCAGGCATGGCTACACAGGTGATGGTCCCAGGAAGCAGTGCCCAGATGCAGGCCAGGGCAGCCCGGCCCGCCTCCCAGACAGACCCGATGGATCCGTTGCTGTCAGGTATGGCTGTGCAGCAGCaggtccagcagcagcagcagcctcaTATTTCAGCTGCCATGCCACCCCAGGCCGCCCTCAACTCAGGGACCCATGGTACCTGTCTGGAAGAAAATGCCCCCGCAAGTACAAATGGGAACACTCACCCTCCTCCTCCGTACCCTTATGGAAGCCAACAAACTGGCCAGGGCTTCAATGCCATgggacagcagcagcaacagtcAGGGAACATCCAGTTTGCAGCCCCTCAATCCAAGGGTCTTCAAGGACCTCCTGGGGTCGCCGGCCCAAGggtccccccccctccccctccatctGCACCGCCACAGGGGCACCTCACCGCCAAGTCCCCcgtctcctccccctctcccttccaGCAGGGCTCTCCTGGGACTCCTCCAATGATGGGGCAGAACCAGGCTCAGCTGGGACCCCGCCCCACAGTCCCCCAGGGTTTCTCCCAAGCAGTCAGCTCCCCGGGCAGGGCTGTGCTGGGACAGCAGTCTAACTTCATGGTAATGTCCCAGCAGGGACAGGTGCCCCACTCTGGAATAGGAGGTATCCAAAAACGGATGCCCATGGGATTCCAGAATGTGCAAGCCAATCCGAACTTCCTCCAGGGCCAGGTGACCCCTAGTACTGTAGGGGCCCCTGCAAATAACACCAGTTCCCAACTACAGAGCACCCAGAGCATTCAACATGCAGgaGGCCAGCCTTCTGTCTCAGCTCCTAACCACATGCAGGGAACCCACGGTCAGCCCAATGTGATCCAGAACAACATAATGGGCCTTCATGGGGGCATGAACAACCAGCCCCCTGGGAGCACTGCTGGAGGAAGCATGGGACAGCCCTCCCAGGGCCTCCAGACCCAGATGATAGGAATGCAGCCCCAGCCCATCACCTCGTCCCCTGGACAGACAGTCCTATCCAGGGCCCAGCTTGTGAATCCGGGGCAGATGCTGGTAGGGGGTCAGAACCCCAACATGGGTCCTCAGCGAGGAATGACACCTCCCAAGCAGATGATGCCCCAGCAGGGCCAGGCCATGATGCAAGGGCATGGGCAGATAATGGGAAACCAGAATCACCAGGTCATCCTGCAGCAAAATCCCATGATGGAGCAAATGATTGCCAATCAAGGGAACAAACAGGCCTTTGGGGCTAAGGGTCCCCCGGGTGTCATGCAAGGACAGATCAGGGGGCCGTCACCTAATGTGCAAGGGGGTATGGTCCAGTTCCAGACTCAGATAGGTCAGCAACCCCAGCAGCATCAGCAACAACAGGCAGCACAGCAgccacaacaaccacaacaaattCCTATGAATGGTAATCCCAACCAAGTAATGGGTCTGCATGGGCAATCCATGAGACTTCCAGGAGGCCACCATCTTgtccaacagcagcagcagcagcagcagcagcagcagcagcaacagcaacaacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacagcagcagcagcagcagcagcagcaacagcaacaacagcagcagcagcagcagcagcaacaacagcagcagcaacagcagctacAGCAACACGTGGCACAGCAGTCACAACAGCTTGTTGACCCCGGTGGTGCTGCTGGAGAGATGGCCTTGCAGCAGATGCTCCCTGATGTTCAATCCCAGCAACAAGGAATGGTGGGTCCCCCTCATATGCAAGTTGGCAACGGACATTTTCCTGGGCATGGGATGCCTTTCAATGCACATTTCGGAGGGCAGATGCCCATGGGTGGTCCTTGTGTACAACCTGGGGGCTTCCCAGGAAACAAGGACGTTACTCTGACTAGCCCACTGCTAGTCAACTTGCTGCAGAGTGACATCTCTGCAAGTCAGTTTGGTCCTGGTGGTAAGCAGGCTGGAGCCAACCAGACAAAGCCCAAGAAAAAGAAACCGCCGCGCAAGAAAAAGACTAACAACAATGGAGGGCCAGCGGGACCGCAGCCAGAGGAAGGGCTTGGTCTCGATGTGCGGCCCCCTGGCATGGATGATTCGGATATGCAGTCCTTGAGTGGCGAGCACGGAGTGGGAATGGATGCTGCTGGCCCCAAGCTCACAGACTTTGCCAATCGTCCTCCAGGAGATGGACAGAGGATGCCAGTTTCCCAGCAAGGGAACATGCCAGTGATGATCAGCCTCCAAGGAAGCTCCCCAGACAAACCCAGACTCCCTCTCATAGTTAGCTCACAGTTAACTGGGGTTGCAAGGAGAATGCCTCTCCAGGATGCAACACAGGGTGGCCCATTGCTGGGCCCTGAGGATGTTCCTGGTATGCACTCTCTGCAGGATGGATCAAACCTTGAAATGGGTCACCAGGCTGGAAATGGTGGTCCACAATTAGTTGGTAACCCAGGTTCTAACCAGCTCCTGATGAAGCCTGGGCCTTCACCAATTCCCCAGCACCAAGGCGCCAGCcctcagcagcagcaacagctgcagcagcaacaacaacaaccaacaGGCCCCATGCCTGGGTCACATGGTCTCCATTTCCCTAATGTTCCCACCACTTCGCAAACATCCCGGCCCAAGACACCAAATCGGGCCAGTCCGAGGCCGTACTACCCCCATACGCCTACCAACCGCCCTCCCAGCACAGAACCCTCTGAGATCAACCTCTCTCCTGAAAGGTTGAATGCCTCCATCGCTGGACTCTTTCCACCTCAGATCAATATCCCTTTGCCTCCAAGGCAGCCCAATCTAAATCGAGGCTTTGATCAGCAGGGTCTAAATCCTACCACTCTGAAAGCCATCGGGCAGGCACCGGCCAGTCTAACACCTCTCggtaacaataacaacaacggACAGCAGACTTTCTCTTCGGGCAACAATGCAGGAACTACAGGCGGGAAAGTAGATAAGCACTCCACAGGAGGGCCTGCAAAGAGGGCAAGTCCAAGCAACAGCAGGCGATCGAGCCCAGCTTCTAGCCGTAAAACGACCCCCAGTCCAGGACGGCAGAATGTAAAGGCCAAACTTGCTGTTGCTTCTCCCCAACACCAACAACCCATGGTGAACCCTCAAAACGTACTGGTTCATCCTCCTCCTGTTTTGTCCAGTCCTGTTAGCAATACCTTGCCACCTAGTACTCTGGGGACACAGCACATTCAGAGTCCTTTCCCTGGTATCCATGCAAACCCTCCTGATATGAATAAGGAAGGGCAAACCGTACCAATGGAAGCGCGACAGGCAAACCAGCCTCAAAGAGACTCTTCTGTCTTAGAGACAAAAAGTCCCCGCATAACTCAGGAGCAGAAAACTGCAGTAGAAGAGTCAGCTAGACGGGAGGCCTTGGCTCCAGAGAAGGTGCAGCCACCGCTGTCTGCTGAAGATGtatccagagctgctccttcccCTGCTTTGAGAGAACCCCCAACTTCTCTGAGCCAGCTGCTGGACAATTCAGGTGCCCCCAATGTTTCTTTGAAGGATGGTCCTCCAGAAGAAGAAAAGACTAGGAAAGAGAGTCCTCGCTTCCCAGTGGAACAGGAGGTCCCTCGGAATCCTAGCACTTCTCAGAGCTCAGATGCAGGTGCTCCTGTGATTGCGAAAGAGCCCGACCCCATCCCAGTTGCAAATGTCCCTGCTGTTTTGCAAAGGCCACCATCGTCAACATCAGTCCCTTCCAAACAGATTACCGTCTTTGTGACATCCAATACCATCAGTTCTTCTTCTGCCACTTCCTCCCATGTGCTGCCCGCCTTAGTGTTGTCTAATAAGAATATTAAACCCTCTGAAAATCAGGCATCCACCTCTAGTTCTGCCAACTCCCGCCCAGCCCAGTTCATCCCAGGCTCAGGCCCAAGCACAGTGTACATTAGTCCAATCTTTCAGGTTCCTGCCTCTCCCATTCCCCCTACCACAAATGTCATGCCCCAACCAGTAGCGCCTCTCCAAATGCAACCTAATATACAATTTTCCCCAGCACCTGTAATCACCCAGCCTTCTCCGGTCAACCAATCCAACACCCAGACCTGTCGGCCTATGGTCCTGGGACAAGTTCAGTTACCTACAAACCAGGGGCCTCCTGTCAATATTTTTCCCCAGCCCCAACAGCAATGCTCTGAAACCCCAAAAGAAAGCACCCCTGCTGAGATTCCTCAAGCCAAACCCAACACTGCTGAGCTCCCTTCTCCCCGTCCAAATGCCACTCCTTCACCATCCTCCCAGCCTCTAGGTTCTTCTCCACCTTGTGCCAGTCCAGGAGCTGTTAATGCCAGAAGAAGTCCAATGTCCCCTACAACTGCATCATCCAAGAACAAGCTTGACAAAATAGGGCAGACCGGGATGACCAAATCGAGCGGGGGTGTGCCTGACTCTCCGCAAAAAAAAGAGGACCATCCAGCACCTTCTGAGGTTGACGTGCAATCAGCGGTGGCTTCTGGGGGCAGACTTCAACAGGCTCCTCCTGTAAGCATCCAGACAAGCCCGTCTGAAGGAGAACAACCTGCCGCCAGCCAGAAAACTATTCCTGCCACTTCCCCTGCCCCTTCATCTGCTAGTTCAACTGCTGGATCAGCCTTCACTGGACCTACCAACACTGTAGGCAGTTCCTCCGGTACAGCAGCACCAACTGCTCCCAAAGAGGCACCTTCTGCAGCCCCAGTGGCCGAGACCAGTCAGCCAGCACCACAGAAAGACTTGGCAGAGGACAAAGGGTTGCAAGGGAACACTCAGAGTGCAGCATCTGTTCACCCTGAACCACCGCAACAGGAGGTGCCTGTAGCTGAGAAAACTGgagATGATACAGCTACTGTAACAGAACAGGGGGAAGCCAAGGGCGCGCCTGAGAAGCTCAAAGGCCCAAGCAGACGCAGCTCGCGGGCGGAGAGGGACACGGAGGAGGCGGCTGCTGTGCAGGAGGCGGCTGAGAACGGGCAGAGGAAGAGGTCCACCAGGCCAGGCTCGGCCAACACCACTAACACCGTCAAAGATACAAACACAAGCGCCAGCCCAACACAAGCCAAGCGAAGGAAATCGAAATGACACCTGTACTGTTAACATGtgaattgtaaatgtttgtgaattatttttatcagcttttttttttttttttcctgggctaatttttttttaatgaaagaaataacTGTGTACAgatgattgttttaataattataatattggtGTTGTCTCCCGCAGCAatgtgagtttttattttagagtttcattttcaaatgctggaataataatatttaggCACCTGATTATCAAAATGTCGCAagttaattgtgtaatttttgtTCAAAAACGCTGAATTAAATTTTCTACAAtctttttctgtcttgaagTAAGGATATGGAGGATGTCAGAATCTGTTTTCTTGGATCCTAGTCATGAATTAGCCATTAACTGACATCGGTAAAGATTgttgcattttcagtgttttaacattttagttATGAAATTATACAATACATCTTAAGAAGTGTCCTACCCCCCTGCATATGGCCATGTTTTGGCTCTTTAACTTTCAGTAACACACAATCATAGTGTTCTGGTGGGCTGGTGGGCAAACTTATGAAAAGATTCGTTTTTATCTGTATATGGTGTTCTGAATGCTCTTTTTCTGAGCTTAGGTACTCTGTGTAAATAGATGTGGTTTATTTTCGGCCTTGATTACTGGACCGAAGCTCAGCTGTGACGTTTGTAGCCGGCATCTTAAGCCACGCTAAATGTAAAGGTGCTCCTTTGCCGTCTTCATTTATGGTTTATTCATGAAGCGTCTATAGGCGTTGATTGCAAACTGTGGTGATACCGGGGTTCACAAGTATACAAAGTGGGAGGTGTTATTCCATCACAAAGTTTTTGCAAACAGTCAGTGGAAAGTAAACCTTCAGATTGTCATATGCTTATCTTATAGTTAGTTGTAGATTCATGTAATATCAGCTAGGACAACCTAGTGCAGATTTTGAGGGGTTTCCCAACAAATGCAGACAATACAGAGGTTTAGGACAGATCTTTTACTCTTGGCTTCCCAAATGTGATCCTTGATACTGAAAACTGTACATATCTagactaaatatatattcacatcgTGCACAGGCTCGTGTTTGACTGAGGAAGACCATTTAAAGAAGGTTGAAGCTGACTTGTATTTAACTTCTTGGCAGAAAGCTCTTGGGTTTAATTTAGGGTTAAATTccatttaaaaccaaatatataAAGCCAGACGAGCATGAACAGTCCTTCTGCGTTGTGTACAGTTACATTGGTTTCCCCTCACTACTACTTTAAAAGTCATGCAGCCATCTTTCCTCTGAGACGTGAGAAATTAAGTTACAGTAGGTTCAATTTCTACTGTGATCCTCTTGCCCTACTTCATCCTGCCACTAGCAGTCACTATAAACATTTTGGGGTTCTAGCACCAatcaattaaaagtttaaagtcTTGTCAGCTTTCAGTTCTATTCGTATTGTTCCTAGTGGGTAAAATATACAGAGGTACAGATTTGTACCTTTCTGTAATACAAGCCTTCATTATACTTGtaattaacaaaaagaaaaccaatcaGTACTGCACCACCTGAAATATCACAAGACGTGATGTGTAGAGCCATCACTGGATCGTTGCCCACGATTGTAATGATAATTGCTTGGTTAATTAGATCAAGAATCGATTTTTCTCTTCCGTTGCCAAATGAATGAGGGCTATCATACTACATTTCACCTTGAACCCAGACCTTTAAGAAACATAAATCCATTTAAAGCACATGTTTTTAGCTGCTGCGTGGTTTCTAGTCTAAAAGATGGTCGAACCTGAACCTACCATGTATAATAGTTACCGAATGTTTCATAATGAATATTGTTAGGCAAAAGACAATCTGGTTTTTACTGTTTATAATTTGTTCAAGTGATTTATTGAATGCTTTAACTTGTACAGTTTAGAGAAGTTTGGGATGTGTCCTAGTAATGGAGTAGTGCTCTCCTGGTAACCCCCTATTACAATCAACCTTAACCAGAAATCTTGAGTTTGATTTAAATTGGAGTTGGATGCTGTCTGTTTGTGCGtgttttcttgaaatgtgttttttatttgtattttttgtcttgtttcagaaaacatgttcaaattatTAAACAGAGATGCAATGTGATATATCAGTACAGAGACTGAATAAAAACCATACAAACCCAGAACATGTGCATGCATGTTGGTACAGAGGGGAAGTCTGAGCTGTGAAAGAAGTCTTGTCATGCTAAATTCACAGATTTAACACAGTTTTCAGTGTTTCCAGAAATACAGAGACGAGCGGTTATTTAAAATGCGTTTTGTACgttttttaaaagtgtgttgttttttccttttccaaagtGCACCCAGTCTTGCCAGTGACACCAGTTCCTTTGATGTTTTTCATATCATTGAGCTGTTTCCCTGTTTATAGGACAAAACCGTCCATTACAGTTTGTGGGTTTTGTTTAGCCTCCATACAATGCTGTgccagttatttttcttttccctatGACACAGTTTCAAGTGTAGCCCATTCAAGGTTTAAACTGACGGAATAAACTGAAGATAGCATAGCAAAGTTGAACCCATTGGGTTTATTTCTCCTTTCAGTTGTTCCCGATTATactgataaaataatatatttttaaaccaacaCGAAAACATTGAGTTTGAGCttcaaatgtcttttttatttttatttgatttttttctacGCCTTTTTTTAAGTCTTAAGTACTGTATGTGAATAGAAGCTAATGTGTGTAACAATGCCTAGGATTATGATAATTCTTTTgaccgtttttgtttttgtggttgtaaATAATTTTGTAGAATATTTCTGACGTTGTAGAAATGGACCAGagtaaaaacacaagaaatgaGATTTTAAAAGGCATATTTTAAGGGTTTGTATCATGTAATTGTGTGATGTTCACAATAAATGTTACTATTTCCTTAAA

Function

GO: NA

KEGG:

id description
K14971 NCOA6, ASC2; nuclear receptor coactivator 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008121 True 8594 mRNA 0.49 15 43159569 43175126

Neighbor

gene id symbol gene type direction distance location
AMCG00008116 NA coding upstream 103884 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 141118 43012508 ~ 43018451 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding upstream 397024 42761526 ~ 42762545 (+)
AMCG00008111 NA coding upstream 445990 42704984 ~ 42713579 (+)
AMCG00008113 NA coding upstream 466710 42692026 ~ 42692859 (+)
AMCG00008127 NA coding downstream 43973 43219099 ~ 43223126 (+)
AMCG00008130 NA coding downstream 57184 43232310 ~ 43251526 (+)
AMCG00008128 NA coding downstream 77471 43252597 ~ 43259195 (+)
AMCG00008141 NA coding downstream 161815 43336941 ~ 43338038 (+)
AMCG00008143 NA coding downstream 216978 43392104 ~ 43410731 (+)
G28637 NA non-coding upstream 38788 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 537412 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 572901 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 658588 42500674 ~ 42500981 (+)
G28421 NA non-coding upstream 973187 42117921 ~ 42186382 (+)
G28678 NA non-coding downstream 2676 43177802 ~ 43201203 (+)
G28862 NA non-coding downstream 718983 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 878839 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1516415 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1593551 44768677 ~ 44816663 (+)
AMCG00008120 NA other upstream 3497 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 51327 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 722341 42413632 ~ 42437228 (+)
G28395 NA other upstream 1166192 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2437824 40663972 ~ 40721745 (+)
AMCG00008132 NA other downstream 117470 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1848022 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1972271 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2165448 45340574 ~ 45343914 (+)
G29183 NA other downstream 2265387 45440513 ~ 45441064 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_00478677_00491078 NCOA6 coding CI01000021 null 478677 ~ 491078 (-)