AMCG00008127


Basic Information

Item Value
gene id AMCG00008127
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43219099 ~ 43223126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008127
AGGGACCAGACACAGGCTGGACACTTTGGGACGCATGAACTGGTCTCAGTATTGAGATAGGAAAGCGATCACTGAAGTCTCCAAAGTCCTATCGTGGACCAGCTTTGAGGGTGCCTTGAAATCATCCATTCTTCTGCACagtgttctgctttttttaattattgtgttctATTTCAAACTTCAAACACAAAATCGTCTGTAATCAACCTTGCGAAAGAAATCGATTTTCTAAAGGACCAAGCCCTTCTTGATTCAGTACCAAACCAAATCCAAGGAAAATGCCTCGATCATTCCTGGTGAAGAAGTATTTCACCAGCAAGAAGCCGAATTACAGCGAACTTGAAAGCCAAGCTGGGTCGGTGTCTCCTATTGTGCCAGAGCGGTACCCCCTGGCAGAGCTCCCTGCAGGGGAGAATGGACCAGTGGCCGCCTGCTACGCAGGTGGTCTGGTTTGGGACGTGGGGCTCCTCCCTGCCCTCTACACCCCAGTGACCATCCCTTCTCCAGCACACCCACTGGACCTGAGCtcccagtccagcagcagtgaggAGGACGAGGGACGCACTTCAGACCCTCCCAGCCCAGAGCCATCGGACCGATTCCACTGCCCCCACTGCAGCAAGTCCTACAGCAGCCCCTCAGGACTGTCCCGGCACCAGCTGTCCCACTGCGGCGAGACTGCTGTGGGTGCTACTGCTCGCCCAGCCTTCCGCTGTAAGCACTGCCCCAAGGAGTACAGCAGCCTGGGGGCCCTGAAGATGCACATCCGGTCACACACGCTGCCCTGCGTCTGCAACACCTGTGGCAAGGCCTTCTCCAGACCCTGGCTCCTCCAAGGACACATtcgcacacacacagGAGAGCGCCCATTTTCCTGCCCACACTGCAGCCGCGCCTTCGCCGATCGATCGAACCTGCGTGCTCACCTGCAGACCCACTCAGAGGTCAAGAAGTACCAGTGTGGCAGCTGCTCTCGGACCTTCAGCCGCATGTCCCTCCTGCACAAGCACACCGAAGCTGGCTGCTGCTCCACCTAAGAGAGAGATAggaggggggagaaagagagagagagagagaagaagagggGGGTGCTTTCCTGCCCAAAGACTTCA

Function

GO: NA

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008127 True 1112 mRNA 0.56 3 43219099 43223126

Neighbor

gene id symbol gene type direction distance location
AMCG00008121 NA coding upstream 43973 43159569 ~ 43175126 (+)
AMCG00008116 NA coding upstream 163414 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 200648 43012508 ~ 43018451 (+)
AMCG00008115 mafba,LOC107680735,LOC107562627,LOC107703617,LOC105904296 coding upstream 456554 42761526 ~ 42762545 (+)
AMCG00008111 NA coding upstream 505520 42704984 ~ 42713579 (+)
AMCG00008130 NA coding downstream 9184 43232310 ~ 43251526 (+)
AMCG00008128 NA coding downstream 29471 43252597 ~ 43259195 (+)
AMCG00008141 NA coding downstream 113815 43336941 ~ 43338038 (+)
AMCG00008143 NA coding downstream 168978 43392104 ~ 43410731 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding downstream 248524 43471650 ~ 43494202 (+)
G28678 NA non-coding upstream 17896 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 98318 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 596942 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 632431 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 718118 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 670983 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 830839 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1468415 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1545551 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1572798 44795924 ~ 44798463 (+)
AMCG00008120 NA other upstream 63027 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 110857 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 781871 42413632 ~ 42437228 (+)
G28395 NA other upstream 1225722 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2497354 40663972 ~ 40721745 (+)
AMCG00008132 NA other downstream 69470 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1800022 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1924271 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2117448 45340574 ~ 45343914 (+)
G29183 NA other downstream 2217387 45440513 ~ 45441064 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_00558429_00561268 SNAI1B coding CI01000021 null 557795 ~ 562087 (+)