AMCG00008128


Basic Information

Item Value
gene id AMCG00008128
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43252597 ~ 43259195 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008128
ATGGAAAACCTAAAGCGTCCAAGAGAGGATAGCTTCCTCTCCGATATGTGCAAGACGCCAGAAAAGCGGGTTTCTGAAGCCCCCCGGTCGCATGAAGATTATAAGGACTGGGGTGTCGAGGAGACGTGCAGGTACCTGGAGCAGGAGGGCTTCGGCCAGTGGCAGCAGAGATTCAGAGATGAACAGATTACAGGTGTGGGTTTGCCCTACATCACAGACTCGCATATGGAGAAAATGGGCATCAGCCCATTGGGGGTCCGCTTACAGATTCTTCACTGCCTAAAAAAGCTGTGGCAGATTTCTGTCCACAGGATGAAGGTTTTCAATGACCCCATTCACGGGCACATAGAGATGCACCCATTGCTGGTGCGTATCATCGACACCCCGCAGTTCCAGAGACTGCGCTACATCAAGCAGCTGGGCGGAGCCTATTTTGTGTTTCCTGGAGCCTCACACAACCGCTTTGAGCACTCCATAGGGGTGGGGTACCTGGCTGGAAGGCTGGTCCAGGCGCTACATGAGCGACAGCCGGAGCTCAACATCACCCAGAGGGACATGCTGTGTGTGCAGATCGCAGGCCTGTGTCACGACCTGGGACATGGGCCATTTTCTCACATGTTTGATGGAATATTCCTCCCAAAAGCCCGTGCAGGCCACCAGTGGAAGCATGAGACTGCCTCCGTCGATATGTTTAATCACCTGATCGCCGTCAACAAACTGGAGTCGATGATGGAACAGTTCGGCCTGGTTCTTCCAGAGGATCTGTTCTTCATCAGAGAGCAGATTGCTGGCCCAAAGCACACAAGCAAAGGCGTACCAGACAGCCAGGACCAGTCATCGTGGGCCTACAAGGGTAGGGCAGAAGAGAAGGGCTTCCTGTATGAGGTGGTGGCCAACAAGAGAAACGGCATCGATGTGGACAAATGGGATTACTTTGCCAGGGACTGCCACCACCTTGGGATCCAAAACAATTTCGACTACAAGCGCTTTCTGAAGTTTGCCCGGGTGTGTGAGGTGGAGAAAAAGAAACTCATCTGCACCCGAGACAAGGAGGTAGGGAACTTGTACGACATGTTTCACACCCGGAACTGCCTTCACCGGAGAGCCTACCAGCACAAAGTTGGCAATATCATTGAGACAATGATAACGGAGGCTTTTGTGAAGGCTGATCCACACATTCAAATAGAGGGCTCCGCAGGACAGATGTTCACAATCTCCACAGCAATTGATGATATGGAGGCCTACACCAAGCTGACCGATCACATCTTCCAGCAGATTCTGTACTCCACCTCTCCAGAGCTGGCCGAGGCCCGGACCATCCTCCACAACGTGATGTACCGCAGACTTTACAAGTGTATTGGACAAACGCAACCCACATCCCAAATTATCACACCAGATGACTTGGTGAATTTGCCCAGAGAAGTTGCGAATGCATCTCCAGAGAATGCCACTGTTATGCTGAAACCTGAAGACTTCATTGTTAATATAATTAACATGGATTATGGCATGAAGGAAAAGAACCCCATCAACAATGTGCGTTTCTACTGCAAAAATGACCCGACTAAAGCCATCAAAATCCGTAAAGACCAGGTGTCTCAGCTCCTGCCTGAGAAATTTGCTGAGCAGCTGATTCGCGTTTATTGCAAGAAGACAGATGAGGGGAGCATTGCAGCAGCCAAGAAAAACTTTGTGAAGTGGTGTTTCGACAGAGACTTCGTCCAACCTCAGGACGGGGACATTATTGCCCCGGAGCTGACTCCTCTGAAAGAAAGCTGGCTTCGtaatgatgacgatgatgacgACAATGGAAAGGGAGGAAGATCCATGAATGGAGTCCCTATCCATTTGAAGAAAAGGGCCAGGAAAGAACTCTTCTAG

Function

GO: NA

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008128 True 1878 mRNA 0.51 16 43252597 43259195

Neighbor

gene id symbol gene type direction distance location
AMCG00008130 NA coding upstream 1071 43232310 ~ 43251526 (+)
AMCG00008127 NA coding upstream 29471 43219099 ~ 43223126 (+)
AMCG00008121 NA coding upstream 77471 43159569 ~ 43175126 (+)
AMCG00008116 NA coding upstream 196912 43052668 ~ 43055685 (+)
AMCG00008119 NA coding upstream 234146 43012508 ~ 43018451 (+)
AMCG00008141 NA coding downstream 77746 43336941 ~ 43338038 (+)
AMCG00008143 NA coding downstream 132909 43392104 ~ 43410731 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding downstream 212455 43471650 ~ 43494202 (+)
AMCG00008140 NA coding downstream 238093 43497288 ~ 43507053 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding downstream 346062 43605257 ~ 43621143 (+)
G28678 NA non-coding upstream 51394 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 131816 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 630440 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 665929 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 751616 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 634914 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 794770 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1432346 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1509482 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1536729 44795924 ~ 44798463 (+)
AMCG00008120 NA other upstream 96525 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 144355 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 815369 42413632 ~ 42437228 (+)
G28395 NA other upstream 1259220 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2530852 40663972 ~ 40721745 (+)
AMCG00008132 NA other downstream 33401 43292596 ~ 43305530 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1763953 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1888202 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2081379 45340574 ~ 45343914 (+)
G29183 NA other downstream 2181318 45440513 ~ 45441064 (+)

Expression


Co-expression Network