AMCG00008129


Basic Information

Item Value
gene id AMCG00008129
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43177736 ~ 43192496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008129
aacaagcGTAAAAACTGCAGATTTGTCAATAATATAACAGCATCAATGCCGTTTTAATGGAGCATTTCTTCTGAGAAGaaaagcctttttatttttttattatgttttaataactaCCTCATTTTAAGACAACCTAAAGCTGTGCTTTAAGAttaaattgtttgtgtgtttttaagtatttttggTCATTACGTTTACAActtaaataatacggcaaaggCAGgCCTTTGTTCCAATACCAAGTGAGACCTTACAATTGCACTACACACGTCTTGCCTCAACTGAGATTTCTGCCAACGGGATCAAGGAGGGCTCGGGCCGAGTGGACGAGAAGAAGCGCTGTAGACACGCAGTTCCTGACTCACTACTTCTAGTAGTAAGCTCTGCTGAGAACCCCAAcaacacacgcatacataccCACATATCCCCCTACTTGGGCCCGGTTCTCCTGCTTCTAGCCTAAGCTCAGCCTCTACAGCCCAGCCATGTTCCAGCGACTTACCAGCCTGTTCTTTGGAGAGGTGGAGGATGTGACCACGGAGTGCAAGGGACCCAAACCCTGTGTCTCAGACGCTGACGAGGAGGGCTGGCTACTGGTCAACCTACCTGAAGGCGCTACTCCTGAGGCCAGCCCCATGGAGGACCTCCTCATTGAACACCCTAGCATGTCGGTTTATGTCTCCACCGGAAACCAGTCCATAACCGAGGAGACGGCGAGCATTGTGCTCCAGGAAACCAGTCAGAGGGTGGAGCCCATGCCCTCGGCTGCACGCAGCGTCTCCGGCCGGCCCACGCGTGGCTCGGTCTCCCAGGTGACGGCCCTGGCCAAGGTGACACAGGTGAGCCGAGTGCAGCGGGCCAAGGCACGAGCCGAGCGGCGCCAACTGAGTCGCAGCCGTATCCAGCGGCAGAACCGTCTGCGGGAGGGAGTGCCTCGTCACAGCGGCCACACCCGCGGCAGCTTCCTGCACCAGCCCTGCCAGCGCCACTTCAACTACTGAGACCCGCCAGCCGCCCACACTAGGCAAACCCCAACCCTTTCCAGTTCTAGTCCTATTGTTTAGTTCACCTGAGTTGTTTAAActttagaaaataaaccatGTTTGTGTACAAGCACTTCTAACATTTTCTGGATTAGCACTCTTGTTATAATAGACTTAACctttccttctccctcccctccctctctgtcactCTTCCTCTGGAGCTAATCAGACCTTAACTGCCAgagtaaaaagtaattaaacaaaaactgctTAAGCCCCGCCCCCACAGCGCACATCTGGACACAATGGAGTGGTAATACTCTACATtgttaccatttatttttctgactaGAGGCCATCAAAGAGGTCACAAAATGAGATGGAGACAGCTAGACAAACTTAAAAATTGGAAAGGTTAAGTCTATGTCAAAGGTCTACCTCTTCACAAAAAAGGAATTTCATACGTTAATGTACACCTGAATGTAAATCTTAACCCTTTtatcagttttcacattttccattcgtttttttttctgtgtttgcaggTGTTGGAATcgtaaaaacttaaaaaaaacattttgatagtTGGTTTTGGGTAGGCCATTGGACAGGGCAGAGTAACTTTTAAGAGGAAGTCAAGTGTATCGCCACATGTTcaactttttttcccttttctattTCTGCCACTGCTCCAAATGTTGGAATGTGGCTTCATCTCAGGTTTAATTTGTCAACTGCTTCACCTCATATAATAGTGAAATAGTGCATAAGTCAAATGAATGATTCAACAGTACATCCTGACAGGCAGTGGTAGTATGAAGAGTTGAGCACTGTGGAGATAGAGCAAGTAGATGATGGTGAGAGAGGCATAAGATTTAAAAAGGCATAAgcagagagatggaaagagaacACAAAGGAACAGAAAAGTAACCATAGGGAAGAAATGACAAGGGTAACTTTAACACACTGTAAATGTCAGTGTCTATAAGctgaaatcaatataaaaaatgtaataggaTTTCTTCAGTAGGGGAACTAAGGACTAAAGGatccatttcaaaatatgttgagtagatatttacaaaaaatatcaaattccATTTTGGAAATCCAGcaataatataatgcaataacaGTAGTTGGGGGTGTTGGGGGGGCACTTAAGCCTTGTACGTACTTCCAAATAATGACTTATTTTTAAGACGTGGAAAGGTATATTTTTCAACAGCTCCATCCTGCATTCCTTTCCACTAATTGTATCTCCATCCCATATTCTGTaagttcaaataaatgtaacatttatgaaTAACctataacacaaaaaaacataattgtttgaTAATGGATCCTTAAGCATCTTGTCCATAAGAGttcaaagaaaatgcatttattgttcCATAGCTCCCAAGTCAAGGTATTTTAAGGACAAGGAAAGGTTAGATGGTGTAGGAGGCTACCCTttagagtttgtgtgtgtgtttcttttgttttatttaaaatacatttgtctgaGGTTGACCTTTACTAAAACGTCCAGCACCTGTGTGAAAAAATGGTTATCAGGCACTACATTACGTATGAAATCCTTTTTATTCCCAATATCAGGGGTTTGACCAATTGCACTACATAGCTGAACCTAACACACCAATGTCTGACTGTTTGAGCTGCACAGCTTTACAGGGGAACCACTATCAGAGAAGGGGACGTGGGAAAATGGCTACTTGGAAAAGGTTTTCCTTTAACCATGTGGCTTGTTTTAACACAGACcttgtttgttcttatttttgtaaCCTCTTTCTTTAAGCACAGGGGAGAACTTGATTTCTAACAGGTGATACTCTAAATGCACTGTCAAAagctgatatatttatttattaatactgattACACTTGAGTTAGCAGTATTAACAGGATGGGGAAGAAAGAAATGCCAATATAAGGCTTAATACACCTTCTTCAGTACTTCAGATATCCAGTTGCTGTTGCAGATCAGTGTTACTTTAAGTGAAGTTCTCCTGTGGCTCAAGCACGTTTGAAGCTTCTTATGTAAGAATCTTACAGTCTCATTCATTGCCTTTTTCTTCAGTAGCAGATCCAAATGTAACAGTGTCCTCCACCtaaagaaatgcatatatttaaatatatatatatacatatatataataactatGGTGCtgaagtatataaatatatatacttaagtTTGTAAATGATATAAGACATGGATGTAAGTTTGCATACTGTTTTAAATTTTTGTGAGTCGAGTTTTAGCGTGTGCCGTTACTTTTCTGAACAGTGAggtctgtgtgtgagaggaaTGTGCTGAAGTCTAAAAACCTAAAAGTTATTGAATTGCttgaaaatgttatcagtgatttttcagtgtaattgttttcatttgtttgtttgttttaaggtgGTTTAAGTCAAGGCTCTCAGGATTTTctggtcttttttctttttagtttaaCTCACCACATGGCGGCTTGCGTCAAAGCGCTAGGTGGGTTAATTCAGGTCAATCTACTACATGAAGGCTCCCTAATCTCtggctaattaaataattattgataaTTATCAACTAcagtacaaataattaaaattgctcAAAGACTCCCTCTAgtgacataaaaataaacactacaatGAAATCTGCATGGGATTTTCCCTTCTTGTCTCCAATCTGTTGGAGGAGGGCAGCTCATTAATAATGTTTGACTTGAGTGGCAGCTTCTGTGCATTATTCATGACAATCCTTCCTCTTATGTCTTATGTTAGTGAGACCCCATCTTTTCCTTAGAGCAAACTGAAAGGTTAGCTAAAACGCCATGTTTTGAGCTACTAACATCACGACCTTTCATTATGATGTCATACTTACATTAGTCTGGGTAACCACACTCAAAATCTAGAGATACTTGTGAAAGGCACTGTTGGAGACTCACAATTCCTTCTGTCAATGTCCTACCCTTTTAACACCCCATCTTTAGCCGTCCATCGATCGACAGTGAGGAGTTGGGCTAGAGAGAGGTggattttgtgcattttatttttaatcattttttattcttttcctggggattttaattttcttgaaaTGTAGATCAGATCCTAACCAGAATTTTCCTTTACACTTTTGTCAGTTCTTCTGTACAATAGTACACAGTAcccatgttgtttttcttttagcaATTATGTATTATGAAATGTTGGTTATAATCCTTTTAAGAAGCAGTGGTGAGTCCagcataaatatgtatttgcagtTACAGAGATGCATTTTGGGAAACCTTACAAAAGAGGATTAATGTAAGGAACACAACAATCCCTGCTCTCCAACACTTCACCCTGATTGCTAAACCACAGTGCCTCTTTGGTTGTCTGTATTCTAAGTACGGTTACAGAGATTTTACAGAATTTCTTGAAGCCAAAGGCATAGAGTACAGTAATTACAAAGTAACATCTAAACAAACAGGGTCAGTTTATGGATCCACCACTGAATCTtacatgtttttcctttcctcctTTTTTGTTCCACGATTAATAATTATGATTGTATGTTTGTGAATGGTGTTTTGGAAGTTCAGAGAATGGCCAAGGTACACTAGGGAGGGAGAATAATAGTGTGTAACTCATGTACAAATTGTGTGATGTGAAAAGGGAGGagttagataaaaaaaaaatggaaataaaaaaatttgcttgtattttttcatattgttaTTAGTAAGGTTGTTCACCTACAATGTTTATACCTGGGGGTTGAATTTTCAGGTTTATTTACTTTCCCTGGGATATAGGAAGgataaatggtaaaataatagATCATCTTTAAAGTCTTATATCATTGATATATAAGACATTCTCTtcccccacaccccacaccgCACACCCCATCcaagaaaatatgaaagaaaaagaaaaggaaagttcAATCCCCATGTGTACTGATGATCATGATGTATCTGATATCTATGGTGTATGTGCCTTTCACTCTTGCATGGTTTGTGATGTTCTGAATAAGTTTCCGTCCCTAAGGATACCAGTCCATGAACAGTAGAGACCTATGCAAATAAAGGATGGGGTTCCAGCATCCATTCTGAACTGCAGGTACCAGAGAAGAGATCAATAAACACTCAGGGTGAAACCTGAATCGTGTCTTCTTATTTGCATCCCTCACAACGTTGATAACCTCAGTTTATAGACTGACCTTggtgtttcaaattaaacaaacaacaaaatgttttccccTACACAGTTTCATCACTTTCCAAAGTGCATCATTCCATCCTACCAGGTATATGGCTCACTTAATATATCTAAGAaataaaattgtacattttaagtcaggaaataactgttttatttgtgatgTGCACCTGGTAGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008129 True 5373 mRNA 0.39 4 43177736 43192496

Neighbor

gene id symbol gene type direction distance location
AMCG00008126 NA coding downstream 34405 43133750 ~ 43143331 (-)
AMCG00008123 NA coding downstream 46056 43125754 ~ 43131680 (-)
AMCG00008125 plcg1 coding downstream 94054 43062834 ~ 43083682 (-)
AMCG00008122 clg20h20orf24,LOC105904298,LOC105926099,LOC104925093,LOC102790476 coding downstream 134106 43039398 ~ 43043630 (-)
AMCG00008117 NA coding downstream 141305 43029856 ~ 43036431 (-)
AMCG00008131 NA coding upstream 12962 43205458 ~ 43210346 (-)
AMCG00008134 NA coding upstream 40737 43233233 ~ 43244258 (-)
AMCG00008133 NA coding upstream 76521 43269017 ~ 43270574 (-)
AMCG00008138 NA coding upstream 157603 43350099 ~ 43350744 (-)
AMCG00008137 NA coding upstream 175024 43367520 ~ 43381863 (-)
G28532 NA non-coding downstream 582876 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 676740 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 700746 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 875639 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 887491 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 671111 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 701683 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 803622 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1294714 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1473847 44666343 ~ 44666577 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 57572 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 413082 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 776662 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1088243 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 1327782 41846933 ~ 41849954 (-)
AMCG00008144 phf20,LOC107727854 other upstream 318264 43510760 ~ 43583413 (-)
G28970 NA other upstream 1225378 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1957005 45149501 ~ 45228504 (-)
G29301 NA other upstream 2858199 46050695 ~ 46054346 (-)
G29361 NA other upstream 3288450 46480946 ~ 46481898 (-)

Expression


Co-expression Network