AMCG00008132


Basic Information

Item Value
gene id AMCG00008132
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43292596 ~ 43305530 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008132
ACCCGTTCTCTCCTGATGGCGTCAGTCCCTGAGCATGTGTTGATGAATGAAGCACTGATAGAAGATCTGCAGAAGGTGGCTAAGGACACTGCCCTGCTTCAGGGGGTCCTGATGAGGACCAAGGAGACTCCCAATTCCTCAGAGGTTGTCAGCTATGCTCCGTTCACACTCTTCCCCTCTCCAGTACCCCGGTCTCTGTTCGAGCAGGCCCGCCAGGTCCAGACACACTTCAATCTGCTGGTGGACAGAATCAGCCAAGATGCAGAGTTCCTAGAGCAAGCACTAGCCAGCACAATCAAAGTAGATGACTTCACAGCAAAactgttcaacatctacagACAGGTTAAACAAGAGGGCTGTTCACAGCATATAGTTTTGGGTTTGAACCGCTCAGACTACATGCTGGATCCTGGAAAAGATGGCAATACATCCTTAAAGCAGATTGAGATTAACACTATAGCTGCCGGTTTGGGAGGGTTAACTTCACGGACTCCAGACGTTCATAGACACATCCTGAAGGTCGCAGGACAAGTcgaagaacagaagaaaatccTGGACAATAACCCGGTAGCAGGGTTTGCTGAGGCCATCGCCAAAGCCTGGGAGCTGTATGGCTCTGAACGGGCTGTGGTGATGTTTTTGGTTGGAGATGTTGAAATGATTCAATTTGACAATCGATTTGCTGAGTATGAGCTCTGGAGCAGAAATATCGCTGTCATACGCAGGAGGTTTGATGATGTGAGCAAAAGGGCATCCCTGGATCAGAACAAGAGGCTGTTTATaGATGGTAAAGAAGTTGctattgtgtatttttggaATGGGTACATGCCTCAGAACTACACAGAACAGGGCTGGGAGGCCAGTCTGATGATGGAGCGCTCCCGGGCAGTGAAGTGCCCTGATATCAGTACCCACCTGGCCGGGACCAAGAAGGTCCAGCAGGAAGTGTCTCGGCCAGGGGTTCTGGAGCGTTTCTTCCCTGACGATCCTAAGGCTGTCGCACAGATAAGAGCTACCTTTGCTGGGCTTTACAGCCTGGACATGGGAGAAGAAGGAGACAGAACAGTAGCTATGGCCATAGCTAACCCAGACCACTTTGTCTTAAAGCcccagagagaaggaggagGTAACAATATCTACGGTGAAGACATCTGCCAGGTGCTGGAAAGTGTCAAAGAAAACTCAGAGAGGTGCGCCTACATTCTGATGGACAAAATCCGGCCTCAGCCAGTGAGGAACTACCTGTTGAGATCAGGAAGCCCACTGAAGCTCAGCACCTGCCTGAGTGAGCTGGGCATGTTCGGAGCCTACGTCAGGCAGGGGAAGGGCATGGTGCTGAATGAATGTACAGGACATCTCCTGAGGACCAAGAGTGATGAACACTCGGATGGGGGTTTGACAGCTGGGGTGGCAGTGCTGGACAACCCCCTCCTTATCTGA
>TU35919
AATGAAGTAATGTGTTGCCCTCATGGATCAATGCTTTTAATgcaggtgtatgtgtgtgcctgtATCTTTGCAGACCCGTTCTCTCCTGATGGCGTCAGTCCCTGAGCATGTGTTGATGAATGAAGCACTGATAGAAGATCTGCAGAAGGTGGCTAAGGACACTGCCCTGCTTCAGGGGGTCCTGATGAGGACCAAGGAGACTCCCAATTCCTCAGAGGTTGTCAGCTATGCTCCGTTCACACTCTTCCCCTCTCCAGTACCCCGGTCTCTGTTCGAGCAGGCCCGCCAGGTCCAGACACACTTCAATCTGCTGGTGGACAGAATCAGCCAAGATGCAGAGTTCCTAGAGCAAGCACTAGCCAGCACAATCAAAGTAGATGACTTCACAGCAAAactgttcaacatctacagACAGGTTAAACAAGAGGGCTGTTCACAGCATATAGTTTTGGGTTTGAACCGCTCAGACTACATGCT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004363 glutathione synthase activity molecular_function

KEGG:

id description
K21456 GSS; glutathione synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008132 True 1440 mRNA 0.51 12 43292669 43305530
TU35919 False 477 TUCP 0.49 4 43292596 43301422

Neighbor

gene id symbol gene type direction distance location
AMCG00008128 NA coding upstream 33401 43252597 ~ 43259195 (+)
AMCG00008130 NA coding upstream 41070 43232310 ~ 43251526 (+)
AMCG00008127 NA coding upstream 69470 43219099 ~ 43223126 (+)
AMCG00008121 NA coding upstream 117470 43159569 ~ 43175126 (+)
AMCG00008116 NA coding upstream 236911 43052668 ~ 43055685 (+)
AMCG00008141 NA coding downstream 31411 43336941 ~ 43338038 (+)
AMCG00008143 NA coding downstream 86574 43392104 ~ 43410731 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding downstream 166120 43471650 ~ 43494202 (+)
AMCG00008140 NA coding downstream 191758 43497288 ~ 43507053 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding downstream 299727 43605257 ~ 43621143 (+)
G28678 NA non-coding upstream 91393 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 171815 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 670439 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 705928 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 791615 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 588579 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 748435 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1386011 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1463147 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1490394 44795924 ~ 44798463 (+)
AMCG00008120 NA other upstream 136524 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 184354 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 855368 42413632 ~ 42437228 (+)
G28395 NA other upstream 1299219 41992859 ~ 41993377 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 2570851 40663972 ~ 40721745 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1717618 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1841867 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 2035044 45340574 ~ 45343914 (+)
G29183 NA other downstream 2134983 45440513 ~ 45441064 (+)
G29353 NA other downstream 2962361 46267891 ~ 46268327 (+)

Expression


Co-expression Network