AMCG00008134


Basic Information

Item Value
gene id AMCG00008134
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43233233 ~ 43244258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008134
ATGAATCTCATTACTTCTGAACAGCATACGGACGAAGCTGGTGACATGGAAGTGGAGATGAAAGTATTTAATGATCCCATTCATGGTCACATTGCTTTGCCCGAGTTGCTAGTCCAGTTCATCGACACCCCGCAGTTCCAGAGACTGCGCTACATCAAGCAGCTGGGCGGAGCCTATTTTGTGTTTCCTGGAGCCTCACACAACCGCTTTGAGCACTCCATAGGGGTGGGGTACCTGGCTGGAAGGCTGGTCCAGGCGCTGCATGAGCGACAGCCGGAGCTCAACATCACCCAGAGAGACATGCTGTGTGTGCAGATCGCAGGCCTGTGTCACGACCTGGGACATGGACCCTTTTCTCACATGTTTGATGCAAACTTCATGAAGAAAGCCATTCCAGGTTCTACATGGAAGcATGAGGAGGCCTCCATCTGTATGTTAGATCACCTGATCAGGCAAAATAATCTTGAGAATGAAATGGTGGCAGCAGGCCTGGTTCTTCCTGAAGACCTGGTTTTCATCAAAGAACTGATAGACATTAATGCAGCACAGCATGTGGAAAATAATGGGGCTAGAGACGCTGAAGTAAATGGAGATCGGAGAATCAACAAGCCCTTCCTGTATGAGATTGTGTCCAACAAGAGAAATGGCATTGATGTAGACAAGTGGGATTATTTTGCCAGGGATTGCTCTTACCTGGGGATGGCAAACAACTTTGACTACAATCGCCTTCTGAAGTTTGCTCGTGTTTGTactgtacaagaaaaaaaacaaatctgcttcAGAGATAAGGAGAAGGGAAATTTGTATGACTTCTTTTACATGCGAAACTGCATTCACCGCAGAGCCTGTCAGCACAGGGTTGTGAAGATCGTTGAGGAAATGATATCAGAAGCTTTCTTGCAGGCTGATGGagtaattgaaataaaaggCTCTGAAGAAAGCACTTTCAGGATCTCCACTGCAAAAGATGATATGGAGGCCTACACAAAGCTGACAGATGTGATGTTTCAAAAGATACTGTACTACCCAATTCCTGAAGAGAATGCCCAAAATATAATGAATGCCCAGAATATCCTCAGAAATGTAATGCGCCATAAATTCTACATGTTTGCGCATGAAACAAAACCCTTCTGTTCAAAAATGaGTGAAGAAGAGATTACTGATCAGGTTGTGATATTCATAACTGAGAGAATCCTCATCAATCAGgatcCGCTCGATGTGACGAAAGTCATTGTTCAAGTTGTTACCATGAACTATGGTATGAAGGTAAATAACCCCATTGATGGGGTTAACTTCTACAGCAAAACTAACCCCAATGAAGCCCACCTAATTACTAGAGAAGAGGTGTCTCTTTTCCTACCTAACATGTTTGAAGAGAAACTGGTACGTGtttattacaagaaaataaaaggagaggaggcagagggcCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGCAGAGGGCCCGGAGGAGGGAGAGCGATTAAGGgaTGTAAACCTGGACTAA

Function

GO:

id name namespace
GO:0045088 regulation of innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06885 K06885; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008134 True 1542 mRNA 0.46 15 43233233 43244258

Neighbor

gene id symbol gene type direction distance location
AMCG00008131 NA coding downstream 22887 43205458 ~ 43210346 (-)
AMCG00008129 NA coding downstream 40737 43177736 ~ 43192496 (-)
AMCG00008126 NA coding downstream 89902 43133750 ~ 43143331 (-)
AMCG00008123 NA coding downstream 101553 43125754 ~ 43131680 (-)
AMCG00008125 plcg1 coding downstream 149551 43062834 ~ 43083682 (-)
AMCG00008133 NA coding upstream 24759 43269017 ~ 43270574 (-)
AMCG00008138 NA coding upstream 105841 43350099 ~ 43350744 (-)
AMCG00008137 NA coding upstream 123262 43367520 ~ 43381863 (-)
AMCG00008139 NA coding upstream 152332 43396590 ~ 43408933 (-)
AMCG00008136 trpc4ap,LOC106582896 coding upstream 166951 43411209 ~ 43432086 (-)
G28532 NA non-coding downstream 638373 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 732237 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 756243 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 931136 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 942988 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 619349 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 649921 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 751860 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 1242952 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1422085 44666343 ~ 44666577 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 113069 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 468579 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 832159 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1143740 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 1383279 41846933 ~ 41849954 (-)
AMCG00008144 phf20,LOC107727854 other upstream 266502 43510760 ~ 43583413 (-)
G28970 NA other upstream 1173616 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1905243 45149501 ~ 45228504 (-)
G29301 NA other upstream 2806437 46050695 ~ 46054346 (-)
G29361 NA other upstream 3236688 46480946 ~ 46481898 (-)

Expression


Co-expression Network