AMCG00008140


Basic Information

Item Value
gene id AMCG00008140
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43497288 ~ 43507053 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008140
CAGGTCCTCTACATGCCTCTGTTATTTCACGTCATCTCACACCTGCACAATGCACTGCAAAGGATTAATTAAGAGGTGTATGTGAGCCTTCACACAGTACCAGACGACGAATGGAAGAGACTGgagcccacacacacacaaccacacacacgcacacaaggACAGGATCATTGTAGCAGCAGCCTCTATTTCACTCACATCTCTTTAAAGAGCAATTAACGAAAAGGAGTATCCTTTTTGCCAACAAGAGGTGGTAGCCAACTGAGAGACAGCAAAAGTATACAATGAGAACGAGCTGGTGAGACAGTTTTAAGGAACCCACTTAGACCCGATTGAAATGGGGAGCCGCCCTAGCAAAGGCCGACGCAACTCTTCCCAGCAGCCGAGTGTAACTAGACAGCCTGACACCCCTCAGCCAACTTTCGCTGATCTCAGCAAATATGTGGTGGTGTCCCTGTACAACTATCCAGCTGGGGGCCCTGGGGACTGCAGCATTCGAGTTGGGGAGCGACTCAACGTCCTAACAGAGGATGGCGACTGGTGGAAGGTGAGCTCCACAGCCACGGGAATAGAAAGCCACATCCCCAGCAACTACACTGCCAAAGTGTATCACAGGTGGCTATTTGAAGGCATCAGCCGGGAGAAAGCCGAAGAGCTGTTGCTGTTACCCTACAACCAGGCCGGCTCCTTCATGATCCGCGAGAGTCAGACGCGGAGAGgagGCTATTCCCTATCCGTGCGGAGGAACACCAGCTCCTCCTGGGAGTCTGTGAAACACTATCGCATCCATCGCTTACACAACGGCTGGTTCTACGTCTCCCCCCGGCTGACCTTCCCCTCGCTCATCCAGCTGGTGGATCATTATTCTGAGGTGAGTGAGGGTCTGTGCTGCCTCCTGAGGGAGCCTTGCTTCATTCAGGGCTCCAACAATGTCCCAGTCTTGAGCGGACCCCCACCGATGGCAGTCAGAAAGCCCACCCTCAACTGGAAAGATGTGGACAGCTCCATGCTGTTCAGTACAGACAAAGCGGAGTCAGGAGAGCCATTGGTGAGCGAGGGGCTTCGGGAGGCAATAAACTCCTACCTGTACATGACGGAGGAGCTTGACTGTGAGTCTTGCGGCAAGGGCTGGAAGACTTGAAACTAAAAGACGCCAGAAACCAGGGAAGAGACCTCGGGGATGAGCAACAGCACCAAAGACTGTCTCCTGTTGAGTCCTCTGACATTCTCCATTTgggattgttttttgtaattatttatcttCACTGCCTGGTGCAGTTTTATCTGACACTGAttttaacaaaatcaaactATCCTCCCGAGTGGAGCAGGACCATACTGTAACTGTGGTCCACGGAATGGCTGCACTCCCACCACCACGGGTCCCAGGGACACAAGGACAGTGGGAGATTGAGACGGGAGGCCCTCATTAACTTCCTCTCATTGTCGTTCTTCGTCAATGTAACTGACACCTTCACAAAGACAGGTGCTTTGATGCAGCTCGCATAGTGCAGGTTGAAATCAAGTGAAAAACAAGGAAGATTTATGACAAACTACAACACACAGGATCTGAAGCTGGGGAACCCTTCTGTTTGTAGACAGCGTTTGGCGATCACACAGGAGGATCTCATGACATTGCATCCCACACATGGACCACCCAGAGCGACCCATAAGTACATGCATCTGTCTTCCACCTTACAATATCTTATCAGTTGCTATTACAATTGGGTTGGGActtctatttatgttttatcttCTTAATACcgtttcattttacttttttatgcaCAGTGTAGAAGCGGTCCGACgattgaactttttttttctctccatttgcTTCGTGCCAACTGAGTATTTTCCATCGCAGTTTCCACTTCAGTcgaacactttatttttttattttccataatagAAGTTAGGAGAAAACGAATTGATTGCTGATAgccatgaaattaaaatatgaaaaaaaatcaaccaaaatcatttttttgcCCTGTtgtttaagaaataaacaatgcaagAGAGTTGTTAAaccattattatatattattattattattattattattattaaaaggacagcaaaaaaataaaatagctacCAAAGGAGATATTTGGTTATACTTCTCAAAAAAGTGagaatttgtaatttgcatattatgatcaataaatgtatgcattataaaCAATGTCAGACTTGTTGGGTTGtaatgaacaaaacaattgGGTTATTTTAAGCAATGTACTCATTTATTCAAGGTGACGCATGTGTTTGTTCTTAAAGTCTAGctaaggggagggggggtagaTGGACACAGGACGTGGTGGCTAAGTTGTGGCCATGGTATAGAAAGGCTGATGACACTTTTGTGTACTGAGACCTTGGTTTCAGCAACACCAGATCGATATAACAGATCGAGattaataaatgtttatgaaaacaacaacacaagtttGGACGCAAGTGTTTTGAGTTACCCAGATTATTTAAGCGTCTTTGTAGTgtaggagaaagaagaaaaaatactgtaGCACCATAGTAATCAGTGTGTATTGAAATGCTTACTctaaaattgtttttcattttcccccAAAGATGTGAAGTGGTTACGTTTTGCAATGCAGATTTTCAGCAGTTTCACAATCAAGgtcctgtttgtgtgtgccGTTTCATaacttgtaaataattaatacaaaataaattatttatggtGAATAGA

Function

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008140 True 2720 mRNA 0.44 8 43497288 43507053

Neighbor

gene id symbol gene type direction distance location
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding upstream 3086 43471650 ~ 43494202 (+)
AMCG00008143 NA coding upstream 86557 43392104 ~ 43410731 (+)
AMCG00008141 NA coding upstream 159250 43336941 ~ 43338038 (+)
AMCG00008128 NA coding upstream 238093 43252597 ~ 43259195 (+)
AMCG00008130 NA coding upstream 245762 43232310 ~ 43251526 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding downstream 98204 43605257 ~ 43621143 (+)
AMCG00008145 id1 coding downstream 155511 43662564 ~ 43663708 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding downstream 171062 43678115 ~ 43695564 (+)
AMCG00008149 LOC106572085,LOC107705722 coding downstream 346972 43854025 ~ 43893098 (+)
AMCG00008154 NA coding downstream 469248 43976301 ~ 43999833 (+)
G28678 NA non-coding upstream 296085 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 376507 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 875131 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 910620 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 996307 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 387056 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 546912 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1184488 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1261624 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1288871 44795924 ~ 44798463 (+)
AMCG00008132 NA other upstream 191758 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 341216 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 389046 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1060060 42413632 ~ 42437228 (+)
G28395 NA other upstream 1503911 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1516095 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1640344 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1833521 45340574 ~ 45343914 (+)
G29183 NA other downstream 1933460 45440513 ~ 45441064 (+)
G29353 NA other downstream 2760838 46267891 ~ 46268327 (+)

Expression


Co-expression Network