AMCG00008142 (ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397)


Basic Information

Item Value
gene id AMCG00008142
gene name ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43471650 ~ 43494202 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008142
CTTAAATCCAATTAGAGCAGCACACAGTCCAGACAGCCCCTGGACGCATTGTGCTTACCAAGTGGGAATtgcagtttctctctctttctcgcgCTGCACCTCTCTCTGGCTCGCTagttggctggctggctggctgactctctctctcgctctcttacTCACTCTGCTCTCTCGCACTCTCTCCTCCCATCTCCTGGAGGGACACACTGCTGGGAACTCACTAGTTTTATTTCTCGGCTGACAGGGCAGATTTTGTTTCCAGGCTCCTTCCTCAGTGCAAGATGACAGCCGTTTTAGATCTAAATCCCATCGCATGTGCCGTAGTCGAAGTGGAGCATGACATCGAGACCCCACATGGCGTCCTCCATGTCACCCTGAGAGGCACTCCTAAGGGGAACAGACCCGTCATCCTCACCTACCATGACATTGGACTCAACCACAAGTCCTGCTTTAACACGCTCTTCAACTTCGAAGACATGCAGGAGATCACGCAGCACTTCGCAGTGGTCCATGTTGATGCCCCTGGACAGCAGGAGAATGCTCCTCCATTCCCTACCGGGTACCAATACCCCACTATGGATGAACTGGCTGAGATGCTGCCTTCGGTCTTACTGCACCTGAAGATAAGCAGTGTCATTGGGATCGGCGTGGGAGCCGGTGCCTACATTCTCACCAGACTTGCACTCAACCAGCCCGACCTGGTTGAAGGCCTGGTGCTCATCGATGTTGACCCGTGTGCGAAGGGCTGGATGGACTGGGCAGCTTCGAAGCTTTCCGGATGGACAAGCAGCCTGGTGGACATTGTCATGGCTCATCATTTCAGTCATGAGGAGCTTCAGGACAATCAGGAGCTGATCCAGACATACCGCCTGCACATTGCACAGGACATCAACCAGGACAACCTGAATCTCTTCTGCACTTCCTACAATGGccgTCGAGATCTGGAGATTGAGAGACCTGTAACTGGTCTGAATGAGGACACAGTTAGCACACTCAAATGCCCTGCGTTGCTGGTTGTTGGAGACACTTCTCCAGCAGTGGAAGCTGTGGTTGAGTGCAATTCTAGACTAAACCCTTCAAAAACAACCTTGTTGAAGATGGCGGACTGTGGAGGGTTGCCTCAAGTCGTCCAACCTGGCAAGCTAGCAGAGGCCTTCAAGTACTTTGTTCAGGGAATGGGCTACATGCCCACAGCAAGCATGACCCGTCTAGCCCGCTCTCGCGCACACTCCTCGTCCAGCGTGGGCTCCGGGGAGGGGAACCGCAGCCACTCCCTCACCAACAACCAGCTGGAGGGGGCGACCGCCGCAGCCGCCAACGACAACCAGGCTAGGCCTCAAACCATGGAGGTGTCCTGCTAAACGCACCGCTCTTTCCACTTGCCAGGCAGCCTGTcaccccctccctcttcctcctgtgtctccctcccttccctttCCCCGCTCAAAACCAGAGCAAGTCCTGTAACGAAccatattataaattatacatatatatatatatatatgtcacaagAGCAAGgggacaaaaagaaaaaaggttaacAGCTTATGATCCTCCACCAAGTATCCAGTTATTCTTTTTTTCTAGCAGTGTAAGCATGCATCCCTTGGAAATTCAGTCattgcttattttcttttttttctttttgttgatatcttttttctttgttttgcaaattgtatttattttttacagtgggTTGATCTTTGTTTTTTAGGCACCTAGGTGATGaggttttttttggggggggaagtGGAAAATGGCACAGCCATAACACACAAAGACACGCAAATGGATGATCAGTTCCCACCATCGCTGTCTTGTCCTTCAGCTGCATTCTTCCCTTGCAGTGTGCACACAATACAAAACCAGTCactcttttcccttttctgtgtgTGACTCTCCATCCTTCTCCTCTCCATCCCcagacactacacacacacacacacaatgtatttcttATCTTGTTGTCATTTGTGCGCATACAGTAATTCAGTGCTTCTCTTTCGATCTACTGTGACATCTTGTTCTAGTACAGTATCTTTATTTATGATGGATTTATAGCATGATTTAACATGAGAGTGTAGGAGCAAAATGCTGggattctgtgtgtgtatataaaaaactaaaataaataattacaaaataaataaaaagattgcTTCTGTTTAGGTGTCTCTGATTTGGGAGCGTCTAGTACCAAAGGAGGAAACCTGAGAGCTTACCAAACTTTGTGTTAAATCTACAGGTTTTCAAAAAAGTTGACTGAAATTCGCATCAAAAGCAGGAAACTAACATACAGTGAAGCCTGGGTTAAAAGGCATCAGCAATGGGAGAAACCAGAATTATTCTATCTAGGCCTTTAGTGGCAGAGTTGTTCCATTTGGATAAACTGGACACGTTCAATCACACTGTCTCGCATTAAAATCGTCCCGGTACTGCCTTTCAATGTGACAGAGGGCTTTTCACCTGTCTTGTTGTTTGCCTTTATTGAAGTGTACTGGTTCTTCACGTGGCTTCTCCACTCTAACTACATgagcaggagaaaaaaacactattacaataataatggaTAATAACATGTTGTGTCCAGACAAAACCTTTACGTTTTTAATGAACCCCCACATTAATGAACCGAAAGAGACAAACACaatgaatggggaaaaaaaaacattgtcccTGTGGGTTTGCATGCGGTTTACACGGGTTGCACTGCAGTAGCAAAGCTATGCACAGGATTTGCTTTGAGTGAAGGGGATATGTAGGTAGAAATTCAGCTATTCTTATGTACTTAAACCTAGACTGTTAGTAGAGCTTTCCTTACTAGGAGATGCAGGAAAGCCAACCTGCTGTTCTTGTCGTTTATTATGGGACCTTATACCTTGTAACATACAGGGCAGGGGTGTGgtaaatgggggaaaaaattgtCATCCGGAGAATTTAAtccattatatacatttttggtgTACGTTTTGAAGCTTtgcattgtaatgtttttaaagtcaGGACCGGAAACTGTACAGTGGTTACTTTTGTGTTgatgaaacctttttttttttttggacagttCCTTTTTAGGGTTTAACTGTGCTATCCTCCTCCGTATAAAGATATGGTCATCTCCTTCAGtacattttggtttggttttgttaattttcttaTGTAGTGGATACCAtagtacatttttcaattattgtttTCCCCCGAGTGGATATTCACTGCTGTTCCTGACTGGATTAAAGCCTGGGTGAGCTTGTGATGATGCTACACTGTTGTCTTCAAACAGGGAACATATAATTCTCACTGTCTGCTGATTATATCAATTTGTACTGATTATTAAATAAAGCTAGAAGTTGTAAATGAGAAA

Function

symbol description
ndrg3 Predicted to be involved in signal transduction. Located in cytoplasm.

NR:

description
PREDICTED: protein NDRG3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008142 True 3370 mRNA 0.45 14 43471650 43494202

Neighbor

gene id symbol gene type direction distance location
AMCG00008143 NA coding upstream 60919 43392104 ~ 43410731 (+)
AMCG00008141 NA coding upstream 133612 43336941 ~ 43338038 (+)
AMCG00008128 NA coding upstream 212455 43252597 ~ 43259195 (+)
AMCG00008130 NA coding upstream 220124 43232310 ~ 43251526 (+)
AMCG00008127 NA coding upstream 248524 43219099 ~ 43223126 (+)
AMCG00008140 NA coding downstream 3086 43497288 ~ 43507053 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding downstream 111055 43605257 ~ 43621143 (+)
AMCG00008145 id1 coding downstream 168362 43662564 ~ 43663708 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding downstream 183913 43678115 ~ 43695564 (+)
AMCG00008149 LOC106572085,LOC107705722 coding downstream 359823 43854025 ~ 43893098 (+)
G28678 NA non-coding upstream 270447 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 350869 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 849493 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 884982 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 970669 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 399907 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 559763 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1197339 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1274475 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1301722 44795924 ~ 44798463 (+)
AMCG00008132 NA other upstream 166120 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 315578 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 363408 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1034422 42413632 ~ 42437228 (+)
G28395 NA other upstream 1478273 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1528946 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1653195 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1846372 45340574 ~ 45343914 (+)
G29183 NA other downstream 1946311 45440513 ~ 45441064 (+)
G29353 NA other downstream 2773689 46267891 ~ 46268327 (+)

Expression


Co-expression Network