AMCG00008144 (phf20,LOC107727854)


Basic Information

Item Value
gene id AMCG00008144
gene name phf20,LOC107727854
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43510760 ~ 43583413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008144
GGGACACAGGcgctgcgctctctctctctctctctctctctctctctctcacacacgggGAAACAAACTGCGTGGGCTGCCGACGCCGAGCGAAGGTGGCGGTACATGCGAGGCTGGAAGGACCAACTGTACATGCATCATCACCGGGGGAGGACGTTCACAGATACGAGATTTTTGATGTCAGCAGAATGAGCAAGACACCCCCGAACAGGAGAGGAATAACTTTTAAGGTGGGAGCCCAGCTGGAGGCGAGGGACAGCCTGAAGAACTGGTATGCAGCGAACATTGAGAAGATTGACTACGAGGATGAGAAGGTGCTGATTCACTACAGACAGTGGAGTCACCGCTACGATGAATGGTTTGACTGGGCCAGCCCTTATCTGCGGCCAGTGGAGAGAATCCAGCTGAGGAGGGAGGGActgcaggaggaggaggtgcAGCCTGGTTTCCGGGTGAATGAGAAGGTTTTGGCCAGTTGGTCTGACTGTCGATTCTATCCTGCCAAGGTCCTAGCAGTCAATAAAGATGCTTCGTATACTGTGAAGTTTTTCGATGGTGTTATTCAGACCGTCAAAGGAATCCATGTCAAGCCATTTTACAAAGAGAAAAGTGGAGGGAAATCTAAGAAAGAAGATAAAAACCGAGagaaatattgtttcaaaaAGGAGAGGATCTCTCGCGATGTGAGCGGGGAAGAGAACGGAAAAGACAcgagagaagagaaagagaacgGCACCATGAAAAGCAAGAAGATCAAGCGCAGCGCGAAGGAGCTGGGGAGAGACACCGACAGAGAACGGCCCGAGGAGCACAGCGACCATAAGGAGGAGAGCAAGAAACCCAAACGTGGCTTCCCTGCACAAGACGATCGCAAGTCCCAGGGTACAAAATGGGCGGACGAGAAACAGGTGATTGAGAAGTGCAAGAAGAACGAGCCAAACCCTGTGATCCCAGCAGAGAAGGACGGTGAGCGGGACGGGTCCGAGTGGGGGGAGCCGCTGCAGTGTGACCCCATGGAGCAGTCCAGAGACACGGGAGAAGAAGTGGAATTGGAAATCGATGACACAGAAAGGCAGAGCGAGAGGAGGGAAGAGATGGAGCGAAGCCAGGACAAGAAGGTGCGGGCAGGAGCCGAGGATAAGCTGGAGGCAGAGCTTGGAGGACCtggcgaggaggaggagggagcagagcaggcCGCTGCGAAGGAGGGTGCAGAGAAAGACTGCAAGATCAGCGAAGCAGGAGAAACGACCAAAGAGCCCCCAGCAGGCACTCAGCCCGGTGGACGGGAGTCCGAGGCAGCGGAACAGACCCCTACCCcagtgaggaggaagaggggcaGGCCTTCCTCAGCATCGGCCAGAAAGGTGAGTCAGGTGAACGGCAGGGCGGCAGACAGGAGCCGGAGGAGGTCATCCAGGCACGAGCCAGCATCCCCTCGCACTGCCTCGGAAACCACTGAATCCAAGCACAAGACCCGTTCTGAAAGCCAGCTTAAGGAGCCCTCAGCAGacAACAGCAATCCTTCAGAGCCCAAGCCTGCAACTGAGGCCTCGACTCCGAACCAGAACCAAGAGGCTGCTGATGCCATCCCAGAGTCCCTAGCTATCTCGTCAACTAATCCAGAGCTGCAGGAGGGTGGAGATGGGCAGGCTGAGACCACCATGACACCCGCAGAGCCAGGAAGCATCTCCGCTGAACAAGCTCCTGTTGTGAAACGTCAGCCTCACCCTCCAAACCCCAACAAGTTCAGCAGAGAGCCTTTGTACACGGCAATTAAACAGTCCCCGACAGCTCTTGCCATTGATCTCGACCATAACACCTTCAAGTGCAAGGTGCCTGACTGCCTCAAGTCCTTCCGCAAGGCCAAGCTGTTGCACTACCACATGAAGTATTACCACGGGGTGGACAAGACTTCCGAGGGTGAGCAGAGCCCCAAGAGGAGCATCCAGACGCGGGCCTCTGAGAAGCAGGCGGCCCTGGAAAACCCCAAAAGGAGACGAACCATTTCCGCCTCGTTGCACCTCCCACTGCACAGTACTCACAGGACCCTGCAGTCCCCCCGCAGCGACGGCAAGGCTGGGAGACTGAACGAGAAGAGAAGGACGTCCGCGCCCCCTGCTGTGAACACGCTGAACAACCACCGGCCCTCCCTGCGCGAGAAGAGCAAGGAGAACCAGATTGAGAAGTCAAACcgcaaacagcagcagcagcagcagcagcagcaggagaaaGAGAAGACCTCTGTGGAGACTGTTGTGAAAGATaaagagaagttaaaagagAAGAAACACAGGGACTTTCTCAGAATTaagctgaaaaagaaaaagaagaagaaaaagaagtcCAAATCTGCAGACGAGGACACGCTTAGCGACTCGTCCACAGACAGTTTGCTGTGGAGCGAGGATGAGTATGGCCAGGACGTGGACGTCACCACCAACCCAGAGGAAGAGGGACCCGTGCTGAGACAGCGGGAATTTGAGATCGTGCGCTGCGTCTGTGAGGTGCAAGAGGAGAACGACTTCATGATCCAGTGTGAGGAGTGCTTGTGCTGGCAGCATGGGATCTGCATGGGGTTATTAGAGGACAATGTTCCAGAGAAATACTCCTGCTACATATGCAGAGATCCCCCAGGGCAGAGGCAAAGCTTGAAGTACTGGTATGACAAAGACTGGCTGAGTAGCGGCCATATGTACGGCTTATCCTTCGTTGAGGAGAACTACTCTCACCAGAATGCCAAGAAGATTGCCGCCACCCACCAGCTCCTGGGAGACGTCCACAGAGTCATCGAGGTGCTCAACGGCCTACAGCTGAAGATGAGCATCTTGCAGAGCCAGGCTCACCCAGACTTGAAGCTGTGGTGCCAGCCTTGGAAGCAGGTGGACTCGTGGGAGAAGCCCTGGAAGAAGGGAGCCGGGACAGGAGTGGCGGCGGCGGCGATGGTGGCGGCTGATGACGGGGAAGAGCGCGAGAAGAGCAGCATGTGCCGGGCCGTGGAGGCGGTGGTGGAGAAGCCCTGCCGCATCCCCTCCTTCCAGCACTCCTACATCACCAGCGAGCACTGCTACCAGAAGCCCCGCACCTACTACCCCGCCGTTGAGCAGCGGCTCGTGGTGGAGACGCGCGGCACAGATCTGGAGGACAGTCTGAGGAGCACCGAGGACCTGCTGGCTCTGGGGCAGCGCTATGGCCGCAGCCTGGACTCTGACCGAGTCAGGACACACAGCCAGTTGCAGCTGGATAAGAACACGCACAGCAAGGAAGCTGAGGTGCCTAAGAAAGGCAGCCTAGAGAAGGGCACTGAAGCAAAGGCCGAGCCAGGGGCGGAGAGCACTGACAGTTTCCAGCAGCAGTGGCAGATCAACCTGCTGGACCACATTGAGGCTGTGCAGGATGAGGTCATCCACAGGATGGACTTCATCGAAAGGGAGCTCGATGTTCTTGAGAGCTGGCTGGACTACACCGGAGAGCTGGAGCCCCCAGAGCCCCTGGCCCGACTGCCCCAGCTCAAGCACCGGATCAAGCAGCTCCTGACCGAGCTGGGGAAGGTGCAGCAGATCGCCCTGTGCTGCTCCACCTGAGGAGCTGCCCCCCGCCCCGCCTCCGAAATAACCGTTGTGTAAAAGAATGAGACGAGAACCGACCGATTGAACCACTTGGAAGGACGGAAGCCAAGACCTGGCACTGCAGGACTGGGCAGCTTGGGTGCTCTGGACCTGTTTCCCACTGGATCCTTTCTCCTCCTGCGGGGTATCGCGATGCTCCAGGAGTGCTGACAAGGGCAGGAGCACATTGCAGTCTGCTTTAGAGACGGCAACACCCGAGGGCAGCCGTGCCACCAGAGACTGAAGAGGTGGAAGAGaaactgtaaagaaaaatgagaaaacgaataaacaaaaagcaaacaaacaactgttGTAGATCTTACAGTTTTCCAGGTAGTCATCTTtttgacaagtttttttttttttttttttttttttcctttttt
>TU36079
ttttaaaaattttttttttttttttttttttttttccttttttaagtaATCAGTCCGCATGTCTCCCGTTTGTAATAACCACAGTCTTACAGTCAGCATAACAAGAAGTATATCTTTGTGTTCAGAAGCTTGTGTATCACAGATGACACTGGAAGTTTGtggctaaaaaaaataaacaggccgtaatatttgcaagaaaacgTGCTGGTGCTGAAGTACGCTGTGGAAAACTTCacattgtaattaataattaagagtctttaggtatttattttgttaatcagaAATACTGAGAAATAAAGCAATCGTTGCCCAGCTTTTCTTatcaattttatataaaaacaaatctttgaaAAGGAATAATGGTTAAAACAAAGGCATGAGGtaacttgaaaatgttttttcatcatgggtgtgtgtgggggggggttgaatAAGTGAAAGTAAAAGGTGGTACTGAACTTCTCTGGGACAAGAGAGAAACAGGAACAGTAAAAATGCCACAAGACCCTGACATGATCGGAAACGTGCACTCGCATTGCATAGACTGTACATTACATACATGACACATGTAGGTAATGTAGTATGAGTCTGTTCTGACTCCATATGTTCAGCGATGCAAACGGCCTTCTCCCACTCGGCCACTTTTcgtatttcaaataaatgttggtTTATGGACAGCAGGGGGTGTTCGAATGGCCCGCAGTCTGTGTAAGATGGCACGTTGAgacaatgtatgttttaatctcTGCCACCCAAAAAAACCCAACCTTGTTTGCAGTCCTTACActgcttttttattgtaatgtacattttataaaattgttAGCTTTTCTTTTGTCTGTGATTTCCTGTCTTAGCTCTAATTGTACAGTACTCTGCCGAATTTCTggtttatgattttgttttctggccATTTATTGTCcacattattcttatttattaaagaaCAGACAAATAATTTCaccattttatttccttcttgggctgtacctttttttttgggggggtgggggggtattgTTGAACAAGCCATTGTGTAGTATAAAATGCACCTCCTTGGTAAAAGCTAATGCTAAACACTGTTGGAGGAACTGCAACTCTGTGCAGTGAAAGAAAGCTCTGTTATTTTTACTACTTTTCTGGGATATTCCGTTCCCTCAGTTGGTCGTATTTGTGTTAGCCCTCCACAGACATCTTTCTGAAGCAGCAGTCTTATCTAGTGCTCCCATCCATCTACTTATTTTCTTGCCAATACTTTGTCTACTTCACTGCACCTTTTTTAtgtgattttctatttttgtttgttgcctcctaaatgtgtatttttcaagCTTTCCAATTTATTCTTCTTTCAAGTTActgagggggttgggggggttctCAAATCCCAGCAACATCTATCCTGCTTGTGGCTCATCAACAAGCCAGGACCTTTTATTCCAATCTAATGAAAATATTTCTagagtaaatgttttttctgctcTGCATCTTGAGCTGTTCAAAGATagatgctgctgctgtttttgtgcAGTAGTGTATTATTGCCAATAACTTTTCTCCTGCCCGGATTCCGAACATTTGTTTACTTCCTTCATTTTACCTGCTACAAAGGTTGTCTAAAACTGATTGTGGGGGCCTACAATTAGGCTATTGAGAATGGAGTGAAAATGGAGCCAGCAGAAAAGTGGAGCCCCTACCCCTCTAAAACCACTTTCCCTCTGCACTCAACACCGTTTTTTCCTTTGTGAAAATTATAGGCTTTGTTTATCTATCCAAGACGAGGGTGTGCGACTATGCAGTCAGCTCCATGAAAAGCAATATACTTCAGGCAAACTGCTTATTCACTGGAGCCGCTACTGAGAGTAGTATTTtcgcaaaacaaaaatgttatattctggactaagaaagaaaataaacaatctttttcttaaagcatgtgtgtgtctgttgagTGAATCACAAGGGCTTTTAATACAGGTTTGCCTATTGCTCAGGGCCTTACAGTTTATTTCCCACTGCTGGAATAGTAACTATCCTAGTGTGTGGCAAAAGAGTGTGCCCCTgcttattttgcaaaataaggtccactgtatttttgttgtacATTTACAAAGCCAGCGTATCTGCATTTACAAATGGgc

Function

symbol description
phf20 Predicted to enable DNA binding activity and metal ion binding activity. Involved in histone H4-K16 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Located in cytosol; nuclear membrane; and nucleoplasm. Part of MLL1 complex and histone acetyltransferase complex.

NR:

description
PREDICTED: PHD finger protein 20 isoform X3

GO: NA

KEGG:

id description
K18402 PHF20; PHD finger protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008144 True 3994 mRNA 0.56 18 43512861 43530087
TU36079 False 2144 lncRNA 0.38 2 43510760 43583413

Neighbor

gene id symbol gene type direction distance location
AMCG00008135 edem2,LOC107697010 coding downstream 70694 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 78674 43411209 ~ 43432086 (-)
AMCG00008139 NA coding downstream 101827 43396590 ~ 43408933 (-)
AMCG00008137 NA coding downstream 128897 43367520 ~ 43381863 (-)
AMCG00008138 NA coding downstream 160016 43350099 ~ 43350744 (-)
AMCG00008148 mrgbp,LOC106566471 coding upstream 83155 43666568 ~ 43676377 (-)
AMCG00008152 ncoa3,LOC107090280 coding upstream 313803 43897216 ~ 43922028 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding upstream 378665 43962078 ~ 43972300 (-)
AMCG00008159 col9a3 coding upstream 461520 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 490250 44073663 ~ 44082848 (-)
G28532 NA non-coding downstream 915900 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1009764 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1033770 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 1208663 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 1220515 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 280194 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 310766 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 412705 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 903797 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 1082930 44666343 ~ 44666577 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 390596 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 746106 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1109686 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1421267 42083474 ~ 42089493 (-)
AMCG00008085 NA other downstream 1660806 41846933 ~ 41849954 (-)
G28970 NA other upstream 834461 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1566088 45149501 ~ 45228504 (-)
G29301 NA other upstream 2467282 46050695 ~ 46054346 (-)
G29361 NA other upstream 2897533 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3996726 47580139 ~ 47607012 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02835681_02847361 PHF20 coding CI01000306 null 2835681 ~ 2849257 (+)