AMCG00008146 (hm13,LOC106572089,LOC106566469)


Basic Information

Item Value
gene id AMCG00008146
gene name hm13,LOC106572089,LOC106566469
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43605257 ~ 43621143 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008146
GATCCTGGCGCCCGGTCTTGTGTAACCTCGTACATCTTCTCGGGGGTAACTTGACATTCGAGCAACACGCATAAAAAATGGCCGATGTTGACCAGGGATCGGCGTTTGCCAGTGAAAGCTCCCCGGCTCTCGACAGTCTTAATAATGACACCGTATCGAATGGCACCGACTCCACCAACGCCACCGTAGCCAAGTTTGTCTCCACGCCTGAAGGCACGGCTCTGGCGTACGGCAGCCTTGTGTTCATGGCCCTGCTGCCCATCTTCTTCGGAGCGCTACGATCAGTCAGCTGCGCCAAGAACAAGaATTCCTCGGATATGCCCGAGACCATCACCAGCCGAGACGCAGCCAGGTTCCCCATCATTGCCAGTTGCACTCTTTTCGGACTGTACCTCTTTTTCAAAATATTTTCTCAAGAATACATCAATTTGTTGCTGTCAATGTACTTCTTTGTGCTGGGGATCCTAGCACTATCACATACTATCAGTCCGTTCATGAATAAGGTATTTCCTGCAACCTTCCCCAATAAGCAGTTTCAGCTGCTCTTTACACAGGGATCTGGGGAAAACAAAGAAGAAATTGTCAATTATGAGTTTGACACCAAAGACCTTGTGTGCCTGTGCTTCAGCAGTGTGGTGGGAGTTTGGTATGTCCTCAAAAAGCACTGGATTGCCAATAATCTCTTCGGATTGGCTTTTGCTCTCAATGGGGTCGAGCTGCTCCATCTGAACAATGTCAGCACTGGCTGCATCCTCCTGGGAGGCCTCTTTGTATATGATGTCTTCTGGgtTTTTGGCACCAATGTTATGGTGACGGTGGCCAAATCATTCGAGGCACCAATTAAATTGGTTTTCCCTCAGGATCTCCTGGAGAGGGGACTTGGGGCCAGTAACTTTGCCATGTTGGGTCTCGGAGATATTGTAATACCAGGTATCTTTATTGCTTTACTTCTGCGTTTTGATGTCAGTCTGAAGAAGAACACCCGCACCTACTTCTACACCAGTTTCTTTGCCTACGTCTTCGGCCTGGGTCTGACTATCTTTGTCATGCACACCTTCAAACACGCTCAGCCTGCCCTCCTGTACCTGGTTCCAGCCTGCATTGGGTTCCCCGTACTTGTTGCTCTCATTAAAGGAGAGCTGACCGAAATGTTTAGgtATGAAGAAACCTCCCCTCTACCAGAGGAGGACTCCAAGGATGAGACAGAGAccgagaaaaaagaaaaatagcgACCACACAGTTGAGCACATCTTACTGCCTCTGCATTTCACAGCCCTTTGTATGGAGGGGGGTGTTGGCATTTGTTCTGAATGCGTTTGTTGTACACGGAAACGactaatatattaaatacctttaatttgatattttgtaacACATACATGGTTTGtttaaagaaagataaaagTACAACGGTGTATTGGTGCCTCCttattccattttttaatttattacaatttgcCTTGCATTCTCATAGgcttttttattacttatttttaaggccagaattttaaatttgttaaagTTTTTCCTAAACAAAGGaagaatattcatttttataaagaCCTCAAAACCCAGCTGCTGAAGGCTTTGCAAAATAATTGTTGATGTATTCTTAGTTTTGTTCtagtttaaatactttaaatttctttatactttttttcttgttaagtgattttgtttgcttttaacgATTTGAGCATTTTACTATGTGACTGCACAGCAGGATTGTATAAGTATCATGCACAGTTCTGAGTCGTGTATATCTTAGTCCTGTTGTATCCTTTTGTAGGATAATTGATTTTATATCCTTCCTGTATTCAGATTTTGTAAATTAGCTAAACATGCATGCAGGTCTTTAGTTATCAAATTCCTAACATTAGCAGGAAGGTGGATATTTAGTTCTTTATGCAGACATTAAGGAAGCAATTTTATCTTAAGGGAAGTCTAATTTGATTATATGAAATTGAATTGTGAGCTATCGGTTATTGCATTAATGATAGTGATTTGATATTTGATTAATTGTCATGCTTATCTTACATCATTTTGAATAGTAAGAGTTCCTGGAACTCTTTTTAAagtggatttatatatttaaagagcGCAGCTGAGCTTTATCTAAAGTCTTTATCTAAATATGTTTGTTGTCCTCTTTGTATTGATTGTGTAGCAGTGAACTGACACTGTGGCATACAATTGCAGTTACACTTTTTTTCAGAAAGGCTGTGCCAAACAAtggaacattattattttgtattttttactctATACTCGCTGTATCCATTGTTAAACCTGTCTAGTATTTGTGATGGGGATCAGGCTATATATATCatggtttattgttttatttaatttttttgttccCAGCATTAAAATGCTGTAACACTGATTCTATTCTTGAATCTGTAATATAGTCGGATATATCCAGTTTTTGATTTGTAGCTAATTTCCAATCTTTCTATATAATGTGCACTCGCAGTGGTTTTATGCTGGAAGGTAAGAGTATTAACAGACATTTTCTGATTCCTAACTTTTATCACAACTTACAAATGACAAGATCACTGTACTGTTACAGATCTAAAATTTAATGTTCTGGCCTTTTCAGAAAAAgggtgtgtggggaggggggtggggtgctGGGGGTGCAAGTAAGGGTGActggattttatatatatatatataaacatttatgtCCATGCTTTGCTTGGTGTACATTTAAGTATCttatttgcaatttgtttcCTATTGTACCAATGCAAGTTCATTCTGGCTTCTTTGTGGAGCAGCTGTTCCATTCTGCAATAAATTGTGGTGTACACCACTGTAGAGAAGCATACATCTCCAGTGTACAAGTGTTTCTTCTTGATCGATTTTGATTTGTTATTGGATCATAGGAGTTGCCAGTTCCTGGAATGGACAGGGCCCATGTTTCTGGGTACAACGTTAGGATGGCTGCCTCTGTTTGACCCTGCTGTAACAAACTTCATTACCATTCTCTGAAGAGATTCATTGTGAAAGCCCTTCAATTTTTaccaatttaataaaaacagaaatggctGAAGCGTAGAAAAAATTTTCTGATCATAAATTAAACCGTAAAAgagtacaagtttgtaatttgctatttgCCGAAAAagctgttttgatttggtctaggcatTTGCATGTGTGATGATCGTCAATACAAAAGCAACTCATCTGTGTTGCAATTCAGAGTGCTTTCTCATTCTCTTGACTTCTTctaattggggaaaaaaaatgaagtttgaACTGTACTCCTTAAACTGTTAACAAGTTAAACAATTCTCTGCTAATAAATCAATCCCATAAAATTCCCTAAAAACCTTTTTAAAGTTATTCTTGACATCATTTTGGATGCCATGTGTGCACAAATAAAGAATACGTCAGTGAGGAGCCTCATATTGTTTGAAGCTCACGAgagaatttatataaatacaaaatattgaaatgggCCCCATGCAGTGTATAAATGCATGGAAATTAACTTCACGTTTGgaagacatttttgttattcaCCTGGGTTTACTACATGTCTAAAAATGGACGTGTGAAATGTATCAGGCTTTATTAGAATTGCATGAGCTCGATATAAAATGAT

Function

symbol description
hm13 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

NR:

description
PREDICTED: minor histocompatibility antigen H13-like isoform X4

GO: NA

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008146 True 3616 mRNA 0.39 12 43605257 43621143

Neighbor

gene id symbol gene type direction distance location
AMCG00008140 NA coding upstream 98204 43497288 ~ 43507053 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding upstream 111055 43471650 ~ 43494202 (+)
AMCG00008143 NA coding upstream 194526 43392104 ~ 43410731 (+)
AMCG00008141 NA coding upstream 267219 43336941 ~ 43338038 (+)
AMCG00008128 NA coding upstream 346062 43252597 ~ 43259195 (+)
AMCG00008145 id1 coding downstream 41421 43662564 ~ 43663708 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding downstream 56972 43678115 ~ 43695564 (+)
AMCG00008149 LOC106572085,LOC107705722 coding downstream 232882 43854025 ~ 43893098 (+)
AMCG00008154 NA coding downstream 355158 43976301 ~ 43999833 (+)
AMCG00008155 NA coding downstream 380591 44001734 ~ 44034340 (+)
G28678 NA non-coding upstream 404054 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 484476 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 983100 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1018589 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 1104276 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 272966 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 432822 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 1070398 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1147534 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1174781 44795924 ~ 44798463 (+)
AMCG00008132 NA other upstream 299727 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 449185 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 497015 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1168029 42413632 ~ 42437228 (+)
G28395 NA other upstream 1611880 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1402005 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1526254 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1719431 45340574 ~ 45343914 (+)
G29183 NA other downstream 1819370 45440513 ~ 45441064 (+)
G29353 NA other downstream 2646748 46267891 ~ 46268327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_05693567_05698301 NA coding CI01000021 null 5693173 ~ 5698301 (-)