AMCG00008148 (mrgbp,LOC106566471)


Basic Information

Item Value
gene id AMCG00008148
gene name mrgbp,LOC106566471
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43666568 ~ 43676377 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008148
GAACCACTGGGTTTTAATGCTCAGGCACTGAAGGGACACATTCCAACTGATATGATTTTAACCCTGTTTcGGAAGAAAATGGGCGAAGCTGAGGCCATTCCAGCCGACGAAAAACAAGCGGATTCCGGCTCTAGTTCGGTCGAGGAATCGGTCATATGGAGCCAAGAGGTGGAGGTGTGCCTTTTCCATGCAATGCTAGGTCACAAACCCGTAGGTGTAAATCGTCATTTCCATATGATCTGCATTCGGGATAAATTCAGCCAAAATATCGGTCGACAGGTGTCATCAAAAGTGATTTGGGATCACCTGGGCACAATGTATGACATGCAGGCTTTGCATGAATCAGAAATCTTGCCTttccccaattctgaaaaaagTTTTGTTCTTCCAGAAGAAATCATTCAGGAAGTGAAAGAAGGTAAATTGGCAGTGGAAGAAGAAATCAAAGATGAAataaaggaagagagagacccGCCCGCAACAGTGGAAGAAGGCAGCAATTCCTCTGTGAAGATGGAAAAAGCCAACAGCAAAGACAAGGAGAAAGACAAAGAGAGGGGTTCAGGTGAGAACGCAGCGAAGGAAGCTGCGGACAAGAGGAAGAGGAACCGAGTGACTGAGAAAGTGCTGAATGCAAACAGTAACCCCTCCAGTCCCAGCGGGGCCAAGCGGCGCAGAACATAGCCCCCAGGCACCGCCACATGCCACTGCGACAGGCACGCACCGAGGCCCGGCAACGGCAGCCAGCACAGTTCTGCGATGCTGGGGACACGAAGGATGTTGTAAGATTATTTATCTGTGTAAGGCAGCAGTAAGTAGGGGGATAGAGTTGTACTCTGTCAGTGTATAGGTCTGTTTTTAAGGTTGAGCCACAGGAGAGATCGAATCGGGTCTTGTAtggtcttttgtttttacacaaaccCAAGAAAACTGTAATCTCATTCATCTGCTGGATTTTAAACTGGGTATTGAAATGGTCAGGCCAGGGTGAGTGGGCTGCAGGATTGATCGAAGCATCCCTCTCCTTGATCTGAGGGAAGTACAAGCAAGGACCTGATCTTGTGATGTTTCGTTTTCAGTGTTGTGTGAACTCGTCCTCCATACTAGGCCATCCAGCTCCAACTATTGGTTCTAAACACAGTAACACAAGCAGGGTGGAGATGTGACTGCCCTGAGGTTATGCAGTAAATTGAGAGACCTATACAAGGCAGTGGCTGCTGGGCAACAGGTCTGGCCTGGAATGTCTTGCGTTGGCCCATCTTTAGATTCCTGTTATCCATGTGGACGTTTTAGTTGATTCACAACTGCAGATATTTCATGCAAAGATCAGTTTTTACAATACGAAATTCTGAATTGGGCATTTttattcccagaatgcattcaactgtttatgtttttagtgtCTGATCACCCTCATCCCTTCCTTTCTTGATTACTGAAACTTAGATTGGATTATTATTAGCAATATAGTTCTCGTTAATGCAGGTCTGATTTCTACTCTTCGAGTTCAATCTCTGTCTTGTGCACAAGTGAGAATTttaactgtgtgttttgttagtAGCAGCATCTGTTGATGGTGTCTTTAACTGAATACGTTGAGAGGATCTAGCTACATGTCTAACTACCAGTGACCATCAGAACTACAAATCCTAAATTCATGAGTATTTCAGGCATGTacttctttgtttttgcttttgtattcggtttttattgcattttgtttaatttattgaagtTGTTCCCTTTTAAGactgttttattaaactgaGACAacattgtgctttgttttatttataatggcATTCATTCACAATGGCAAATGTATTTAGgtattgtattataaaac

Function

symbol description
mrgbp Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human MRGBP (MRG domain binding protein).

NR:

description
PREDICTED: MRG/MORF4L-binding protein isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
K11343 MRGBP; MRG-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008148 True 1846 mRNA 0.43 6 43666568 43676377

Neighbor

gene id symbol gene type direction distance location
AMCG00008147 NA coding downstream 110535 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 226502 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 234482 43411209 ~ 43432086 (-)
AMCG00008139 NA coding downstream 257635 43396590 ~ 43408933 (-)
AMCG00008137 NA coding downstream 284705 43367520 ~ 43381863 (-)
AMCG00008152 ncoa3,LOC107090280 coding upstream 220839 43897216 ~ 43922028 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding upstream 285701 43962078 ~ 43972300 (-)
AMCG00008159 col9a3 coding upstream 368556 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 397286 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 1045362 44721739 ~ 44740915 (-)
G28532 NA non-coding downstream 1071708 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1165572 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1189578 42475720 ~ 42476990 (-)
G28456 NA non-coding downstream 1364471 42301277 ~ 42302097 (-)
G28446 NA non-coding downstream 1376323 42283959 ~ 42290245 (-)
G28900 NA non-coding upstream 187230 43863607 ~ 43893808 (-)
G28907 NA non-coding upstream 217802 43894179 ~ 43895951 (-)
G28914 NA non-coding upstream 319741 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 810833 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 989966 44666343 ~ 44666577 (-)
AMCG00008144 phf20,LOC107727854 other downstream 83155 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 546404 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 901914 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1265494 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1577075 42083474 ~ 42089493 (-)
G28970 NA other upstream 741497 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1473124 45149501 ~ 45228504 (-)
G29301 NA other upstream 2374318 46050695 ~ 46054346 (-)
G29361 NA other upstream 2804569 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3903762 47580139 ~ 47607012 (-)

Expression


Co-expression Network