AMCG00008149 (LOC106572085,LOC107705722)


Basic Information

Item Value
gene id AMCG00008149
gene name LOC106572085,LOC107705722
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43854025 ~ 43893098 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008149
CTTTATTTCCCTCTGACTTGCCTTGCATGCTGAGCAGTGGGAGAGTGCAGGAGGGGGTTGGAGCAGGCAGACATTAGGCTGGTAAATTGAAAACAGCAGACCTCAAGGTTAGAGCACATCAATCCTCTGAGATTGGATGCTGGGGAAGTGAAgagcagaaattaaagcagaaGACGCACAGCTGTTGAAGAGtgagagagccagagagagagagcgtgagagagagaaagtgtgtgagggagagaaagagagagagtgtgtgagggagagagagagagagagaggagagaacaaCCTACTGAGAGACTCTCTCACTGACTGCACGTTGCTGGTAGGATTACACTGACAGCAATGGTACCTTAGTTTCCCGGGTGTTGTTGTATTCCTCTGAAATGGACAGCCGGATGGCAATTCATCTTTGGGAGAGCTGTGCATCACCATAATGAGGATATCTGAGAGCAGTGAAGAAGGAGCCCTGCAGCGAAAGTGAACACTCATCTCAGTGAGATGGCAGCGTGGGGGCTGTGGGCCGGGCTGCTGGTCCTGCTGGCATCCCTGTCTCTGGTTGATGGCTCCGTCTTCCTGTCCAACCAGCGCCTGAAGGGACGTTTCCAGAGAGACCGCCGAAACATCCGCCCTAACATCATCCTCATCCTCACCGATGATCAGGACATTGAGCTGGGCTCCATGCAGGCCATGAACAAGACACGGCGCATCATGGAGCAGGGTGGAACCCACTTCTCCAACGCCTTCGTCACCACACCCATGTGCTGTCCCTCGCGCTCATCCATGCTAACGGGGAAGTACGTCCACAACCACAACACCTACACCAACAACGAGAACTGCTCCTCCCCTTCCTGGCAGGCGCAGCACGAGCCGCGCACCTTCGCCGTGTACCTCAACAACACTGGCTACCGCACAGGTTTCTTTGGCAAGTACCTCAATGAATACAACGGGACATACATCCCCCCTGGCTGGAAGGAATGGGTGGGCTTGGTGAAAAACTCCAGGTTTTACAACTACACTCTGTGCCGAAATGGCATCAGAGAGAAACATGGGTTCCAGTACCCCAAGGACTACCTGACCGACCTCATCACAAACAACAGCATCAACTACTTTCGCACATCCAAGAAGCTGTACCCTCACCGACCTGTGATGATGGTCCTGAGTCACGCTGCCCCCCATGGGCCGGAGGACTCGGCTCCCCAGTATTCGGAGGCCTTCCCCAACGCCTCCCAGCACATAACGCCGAGTTACAACTACGCCCCGAACCCAGACAAGCACTGGATAATGAGGTACACCGGCCCCATGAAGCCAATCCACATGGAGTTCACCAACATGCTGCAGAGAAAGCGCCTTCAGACACTCCTCTCTGTGGACGACTCGGTGGAGAAGGTCTACAATATGCTGGTTGAGACGGGCGAACTGGAGAACACCTACGTGATCTACACAGCCGACCACGGCTATCACATTGGGCAGTTCGGGCTGGTGAAGGGCAAATCTATGCCATATGAGTTTGATATCCGTGTGCCCTTCTACATCCGGGGACCCAACGTGGAGGGAGCCGCCATcaATCCACACATTGTGCTGAACATTGACTTGGCACCGACCATTCTGGACATTGCGGGGCTGGACATCCCCCCTGACATGGATGGCAAGTCTGTCCTCAAACTCCTAGACACCGAGAGGCCAGTGAACAGACTGCAGTTTAATAAGAAGGGAAAGGTGTGGAGAGATTCCTTTCTGGTAGAAAGAGGGAAGCTACTGCACAAGAGGCCTGATGGGAAGGAGGTCACCCAGGAGGAGAACTTCCTGCCTAAGTACCAGCGAGTGAAAGACCTCTGCCAGCGCGCAGAGTACCAGACGCCCTGTGAGCAGCTGGGCCAGAAATGGCAGTGTGTGGAGGACCAGACTGGGAAACTGCGGCTGCACAAGTGTAAAGGAATGGCAAGTCTCTCGGTCGCCCGGAAACCGGGCCTGGCCAGCATGAAGGCCCAGTTGTACGGGCAGAGCTCAGATGGCTGTGACTGTGACGTCCCCGATCTCAGGATGAGCCCCTTCAAGAAGAAGAAGCTGCTGTCCAAGAAGAAGTTCAAAGCCAGCAAGAACTACCCTCGCAATCGCTCTTCGCGCTCGGTGTCTGTGGAGCTCAACGGGGAGGTCTTCACCGTGGACCTGGAGGACGGCTACCAGCCCATCACCCCCAGGAACCTCAGCCGGCGCCACAGTTTCGGGGAGGAAGGCGAGGATGGGCTGGAGGGGCAGGAGGACGATGATTTCAGCGGGATGGGCGGCACCAGCAGCCCCAGCACCAACAACGACCTCCTGGTGCCCTCATCCATCAAGGTCACACACAGGTGCTCCATCCTGGCCAACGACACAGTGAAATGTGATGTAGGCTTGTACAAGTCCCTCCAGGCCTGGAAGGATCATAAGCTGCATATTGATCACGAGATTGAAACTCTGCAGACTAAAATCAAGAACCTGAGGGAGGTCCGAGGGCACCTGAAGCGAGCCCGACCCGAGGAGTGCGACTGCAACAGATTCAGCTACCAGTCTAAACACAAGggaaaactgaaacacaaaggaGCCGGCCTCCACCCTTTTAGGAAAGTGGTTCAGGAGAAGGACAAGAAGCAGTGGCTGCTGAAAGAGCAGAAGCGCAGGAAGAAGCTGCGCAAGCTGCTGAAGAGGCTGAGGAACAACGACACCTGCAGCATGCCCGGCCTCACGTGCTTCACACACGACAACCAACACTGGCAGACCGCCCCCTTCTGGACAATGGGGCCGTTCTGTGCCTGTACGAGTGCCAACAACAACACTTACTGGTGCCTGAGGACGATCAACGAGACCCACAACTTCCTGTTCTGCGAGTTTGCCACAGGCTTCCTGGAGTACTTTGACATCAACACTGACCCCTACCAGCTCCTGAATGCGGTGAACACGCTGGACCGCCACGTCCTCAACCAGCTGCACATCCAGCTGATGGAGCTGCGCGGCTGCAAGGGCCACAGGCAGTGTAACCCCCGCACGCGCAACCTGGAGATCGAGGGCAGATCTGGGAGGGATGGGAGGGCTAGGTCCTGGGAGCCCCTGCCTGTGGACTTCTCTGGGGAGACGAACTGGTTAGAACTTGAAACCTTGTACAGACTGGAAGAGCACGCCTTcgatctcaaattgaattttaaCGTGAGCCTGGAAGACTGGATCAATTTTGAGGGTGCTGTAGACCGCATGTTTGCCCTGCTGGGCCATTCCGACCCCTCGGACAGACGCCACGCCCACCGGCGGCCCCCCGGGGCTCACCTGGGGCCGCAGGGAGGGGAGGCAGCCCGGGCGTCAGCTGCCCCGTCTGCCTCCGCCCTCTACCTGACCACGCTGGCCACGCcggccctgctgctgctgcggggCGCCCTGGGGCTCTGCCACGAGCGGGGCGTCTCCTCTGTCCTCGGCTTCCTGGACAGGGGGGAGGCTTTTCTCAACGAGCTGCTGGAAGACAGCGAGTGCAgtgtggaggaagaggaggaggaggagccccAGAGCCACAATCCCCGAAGAGTGAGCCGAGGGCCTTGCACCTGCAGCGACTTCACCGGAGACAATTCGCACGGGGTTCCCATCTGAAATCTTTAGAACATTAGGCCTCACAAAAAGCTATACAGTAACTATACAGTCCTCACCCCCCTTAGTCTCCAACCCCCATTTCAAGttgaccaaattaaaaaaaaaagtctcctaCGACTCTTCCCCCATCAGACAGACCGCTTTGTGGCACCTTCAAATGGAGACGTGAATGAAGTTCACGACTAACAGACTTGACCAGGGCTTCAGTGCAGTACCTTGTTTATATCAATGgactccaaaagaaaaaaaagtttaatattcACATGGTGACATGGGAAGGGTTAGTATTGTGTTCGAAcccaatttttattttgcagtttgttttttagattgtGGCTCATTTTATTTTCGCTGTAGTGTTCTTGGTACTTAgttttttgtagattttgtctcttttatttaattctggCATTAGGCTGAGACTGACCTGTGTTGTAATCGGATGACGAGTGACAAAACGCATCAGATCTCACCCCTCCACTCTGGCCCGTGGGTTAGTGCTGCAGCGTCTCTTGACATCGATGTGCCGCCAGCCGCGGACTTGGGTTTTCTTTCACTGCCATTTAGGTTTTTGAGGACGGTGGTCATTTGGTTCTATGTATTATTCCAGAAGCTTCTCCCGTGTATTTCATTCTGTCACAGGAGTCTTTCTGCAGGGGGGTATTACTCATGAAGCAATAGTATTCCAGTCATGCACTCAGCCTCTTATAATGGAGagattaaacatatatacatttattttttagcagttGATATTGAATGCCTAGATTAACCGTGTAACTCCTTCCTGGTTCACCCAAACCACGGCCCCTgccagaattaaaaaaaaatgggcaGAGAACTATAGTTTGGGCGCCACCTGCTGGTGACACCAGGCTGATAGATCATTGCCATCCCCGATTTCCCGACTGTTCTTTCTCTGAAAGATGATATAAAATACCAAGCACAACATACTGTAACCACACTTGTCAAATTTCATATCTTTCTTAGCAGgagttattattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: extracellular sulfatase Sulf-2-like isoform X6

GO: NA

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008149 True 4667 mRNA 0.53 19 43854025 43893098

Neighbor

gene id symbol gene type direction distance location
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding upstream 158461 43678115 ~ 43695564 (+)
AMCG00008145 id1 coding upstream 190317 43662564 ~ 43663708 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding upstream 232882 43605257 ~ 43621143 (+)
AMCG00008140 NA coding upstream 346972 43497288 ~ 43507053 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding upstream 359823 43471650 ~ 43494202 (+)
AMCG00008154 NA coding downstream 83203 43976301 ~ 43999833 (+)
AMCG00008155 NA coding downstream 108636 44001734 ~ 44034340 (+)
AMCG00008156 NA coding downstream 141288 44034386 ~ 44036127 (+)
AMCG00008153 NA coding downstream 147680 44040778 ~ 44044810 (+)
AMCG00008157 NA coding downstream 213357 44106455 ~ 44131719 (+)
G28678 NA non-coding upstream 652822 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 733244 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1231868 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1267357 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 1353044 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 1011 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 160867 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 798443 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 875579 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 902826 44795924 ~ 44798463 (+)
AMCG00008132 NA other upstream 548495 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 697953 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 745783 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1416797 42413632 ~ 42437228 (+)
G28395 NA other upstream 1860648 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1130050 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1254299 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1447476 45340574 ~ 45343914 (+)
G29183 NA other downstream 1547415 45440513 ~ 45441064 (+)
G29353 NA other downstream 2374793 46267891 ~ 46268327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_02005120_02042997 SULF2B, SULF2 coding CI01000021 null 2004826 ~ 2043167 (-)