AMCG00008150 (eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720)


Basic Information

Item Value
gene id AMCG00008150
gene name eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43678115 ~ 43695564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008150
GTCTTTGCTGAATCACTGGGTCTCTCTCTTACTCTGTAATCGGCTCAGTTCTGCTGCAGTTGTCTCACTGCAGTCTTTGCTTTTCTTCCTCTGCTACCGCATTGCTGTATTACAGGGGTTGCCTGCATTGCGCAGAGGAGGCCAATTCTACAACCCCCTCCCAGGGACATAAAACTGCCTGGGCTGGAGCTCCTAGTCCCTGCTGTCTGAGATCGCAGCTACAGCCCTCACTCTGTGTTGACGTGCTTTGATTCCCGAATCCTCTGCCTTTGTTCGGCCCCTGTCCCAAAAGACCAGCTCTGCAGAATGGGGAAGGAGAAGGTGCACATCAACATTGTGGTCATTGGCCATGTGGACTCCGGGAAGTCCACCACCACCGGCCACCTCATCTACAAATGCGGAGGGATTGACAAGAGAACAATTGAGAAATTCGAGAAGGAGGCTGCTGAGATGGGCAAGGGCTCCTTCAAGTACGCCTGGGTGCTGGACAAATTGAAAGCAGAACGTGAGCGCGGCATCACCATTGACATCTCCCTCTGGAAGTTTGAGACGACCAAATATTATATAACCATCATCGATGCGCCTGGACACAGAGATTTCATCAAGAACATGATCACAGGAACCTCACAGGCGGACTGCGCTGTGCTGATCGTGGCCGCCGGGGTTGGGGAGTTTGAGGCCGGCATTTCGAAGAATGGGCAGACGCGGGAGCACGCCCTGCTGGCCTACACACTGGGGGTGAAGCAGCTGATCGTGGGCGTCAACAAAATGGACTCCACCGAGCCGCCCTACAGCGAGAAGAGGTACGACGAGATCGTCAAGGAGGTCAGCGCCTACATCAAGAAGATTGGCTACAACCCCGCCACCGTGCCCTTCGTGCCCATCTCCGGCTGGCACGGTGATAATATGCTGGAGCCTTCTCCCAACATGCCCTGGTTTAAAGGCTGGAAGCTGGAGAGGAAGGAGCACCATTCCAGTGGGGTGTGCCTGCTGGAGGCCCTCGACACCATCCTGCCCCCATCTCGCCCAACAGATAAGCCACTGCGCCTGCCCCTGCAAGACGTCTACAAGATCGGAGGCATTGGGACAGTCCCGGTGGGCCGAGTGGAGACTGGGGTCCTGCGACCTGGCATGGTGGTGACCTTTGCCCCCGTTAACATCACTACAGAGGTGAAGTCAGTGGAGATGCACCACGAAGCCCTGAGCGAGGCCCTGCCGGGGGACAACGTGGGCTTCAATGTCAAGAACGTCTCCGTCAAGGACATCCGCAGAGGAAACGTGTGCGGAGACAGCAAGGCAGACCCCCCCCAGGAGGCGGCCAGCTTCACAGCCCAGGTCATCATCTTGAACCACCCTGGGCAGATCAGTGCTGGCTACTCCCCTGTCATTGACTGCCACACTGCACACATCGCCTGCAAGTTCGCCGAGCTCAAGGAGAAGATCGACCGCCGCTCTGGGAAGAAGCTGGAGGACAACCCCAAAGCTCTCAAGTCTGGAGATGCAGCCATCGTGGAGATGGTTCCTGGCAAGCCCATGTGTGTGGAGAGCTTCTCTCAGTACCCACCCCTGGggcGCTTCGCCGTGAGGGACATGAGGCAGACAGTGGCAGTGGGTGTCATCAAGAACGTGGAGAAGAAGACAGGTATTGGGACAGTCCCGGTGGGCCGAGTGGAGACTGGGGTCCTGTGA

Function

symbol description
eef1a2 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in central nervous system; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 38; developmental and epileptic encephalopathy 33; and ovarian cancer. Orthologous to human EEF1A2 (eukaryotic translation elongation factor 1 alpha 2).

NR:

description
PREDICTED: elongation factor 1-alpha 2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008150 True 1689 mRNA 0.57 9 43678115 43695564

Neighbor

gene id symbol gene type direction distance location
AMCG00008145 id1 coding upstream 14407 43662564 ~ 43663708 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding upstream 56972 43605257 ~ 43621143 (+)
AMCG00008140 NA coding upstream 171062 43497288 ~ 43507053 (+)
AMCG00008142 ndrg3,LOC107705728,LOC107696989,LOC107693556,LOC108429301,LOC103029397 coding upstream 183913 43471650 ~ 43494202 (+)
AMCG00008143 NA coding upstream 267384 43392104 ~ 43410731 (+)
AMCG00008149 LOC106572085,LOC107705722 coding downstream 158461 43854025 ~ 43893098 (+)
AMCG00008154 NA coding downstream 280737 43976301 ~ 43999833 (+)
AMCG00008155 NA coding downstream 306170 44001734 ~ 44034340 (+)
AMCG00008156 NA coding downstream 338822 44034386 ~ 44036127 (+)
AMCG00008153 NA coding downstream 345214 44040778 ~ 44044810 (+)
G28678 NA non-coding upstream 476912 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 557334 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1055958 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1091447 42584232 ~ 42586668 (+)
G28511 NA non-coding upstream 1177134 42500674 ~ 42500981 (+)
G28862 NA non-coding downstream 198545 43894109 ~ 43895951 (+)
G28931 col9a3,LOC106571930 non-coding downstream 358401 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 995977 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 1073113 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 1100360 44795924 ~ 44798463 (+)
AMCG00008132 NA other upstream 372585 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 522043 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 569873 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1240887 42413632 ~ 42437228 (+)
G28395 NA other upstream 1684738 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1327584 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1451833 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1645010 45340574 ~ 45343914 (+)
G29183 NA other downstream 1744949 45440513 ~ 45441064 (+)
G29353 NA other downstream 2572327 46267891 ~ 46268327 (+)

Expression


Co-expression Network