AMCG00008151 (LOC106519038,LOC106571933,LOC103357347,LOC104951675)


Basic Information

Item Value
gene id AMCG00008151
gene name LOC106519038,LOC106571933,LOC103357347,LOC104951675
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43962078 ~ 43972300 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008151
CGGCGCTgacgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtttGTGTATCCCTTTATCGCTGAGCCAAAATTGCAGCTTTTTAACAGTTAAGTGgcggggggaggaggggggggcgaGAAACAGAGGTGTGATCTGCGAGTGCCAACTAGGATCCGTGAGTGTCAGCCATGGGTTTCCGCAAGAAGAACAAGAGCCCGCCGGTACTGAGCCACGAGTTCGTGATCCAGAACCACGCCGACATGGTGTCCTGCGTGGCCATGATCATCCTGCTGGGACTCATGTTTGAGGTGACTGCAAAGTATGCCATTATGTTTATCACTGTGCAGTACAATGTGACACACGCTACTGATGACAGACCTGAACCAGTCAATGTCTATCAGTATGGACCAAAAGACATGGCAACTGTTTTCTTCTATGTGCTAATTGCAATTATTCTTCATGCCTTGATCCAAGAGTACATTCTCGATAAAATCAACCGACGGCTTCATTTATCGAAAACTAAGCACAGCAAATTCAATGAGTCTGGACAGTTGGCTGccttttacttattttccttcatttgGGGCTCAAGCATCCTGACTGCAGAGGAATTTGCAACAAACCCCACACTCTTATGGGAGGGCTATCCTCATAATCATATGTTTTTCCAGGTGAAGTTCTTCTACATTTGCCAGATTGCCTATTGGCTTCATGCCCTGCCGGAGCTCTACTTTCAGAAAGTGCGCAAGGAGGATATCCCTCGTCAGCTCTATTATATATGCCTTTACGTTTTCCATATTGCTGGTGCCTATATATTAAAtCTTCACCGCCTTGGCCTCATTTTACTCGTGCCACACTACCTTGTCGAGCTCCTGTTTCATGCCTCGCGACTCTTCTACTTCAGCGACGAGAACAAGCAAAAAGGGTTCACTCTGTGGGCCCTGCTGTTCGTCATAGCTCGTctcctcaccctcaccctctctGTCCTCACCTTCGGGTTCGGTCTGGCGAGAACAGAAAACCAGGGCTTCTCGATAGCAGATGGAAACTTCAATGTTCTGACTATTAGGCAAGTCTGGGTGATTAGTTGCTTGGCTGCTATCTGTCTAACTCAAGCCTGGATGATGTGGAAGTTCATCAATTTCCAGCTGAAGAAATGGAGAGAACACAGCCAGAACCAGGCAACCAAAAAGAAAGCTACTAGCCCAAAGAGCAAACCTTCGAAAAAAGAATCGGGCAGGGGGAATGCAGCCAATGGAGTCATGAAATCCGATGAAAGGACTTCACCCCGTTCAAGAAAACCAAAAGCGTCGTAAAAAGCACTCTCTTTTAGACcagtcagagagagagcgagttcAAAAAGCAGAATACTGTCTTTTTCTCACTTAAAACATGATCACCTTTTTCTTGGTCCCAAAAGAACTTACAACAAGAATGATATTAGAAATTGAGTACAACAAAAGCATATTGTATGCTTTGGAGATTTTATACTTTGTTCTGGTTTGTTTActtgaacatttttctttaatagaATTTTTATAGATTCTCAAGGGTTTGTGAAtgcatttgtgtgcattttgaaTAACATTGGACCTTGTGGGGTTTTATAAACAAGGTGCCCTTGAACTCAATGGTTTGAAGTGgtaacacttttaaaatgaatgagttAGGTGGCTTATTGAGGCAAAATCTTTTATATACCTTTACCAATAATGGTCATAAACGCCAGGCAGTAAAAGCAGCACGCATTGATTACTGTGATCTTGGTATAAATCGTATTTGTAGTTAAAATAAACCTGCTCAATTCCACTAATCTGTTTGGAAGCAAAGGAAAGTGTGTGGTGTTcagcaggccctgtgggagaCTCACTATCTGCTGTGATTTCGGAGCTCAGACGTGACGCACATTGCGGATCTCTTGCCTGTCTTGGGCACCTGAACTCTCGCCAGTGTGCATTAGAATACCTTCCTGCGAATGCTGGTTTGTAATGCTGTAATAGTAAAGGAAGCTAAACTTGCTTGGGAGAAATGTGACGGAATGGGGTTTTCATATGAAATGgctttaaattatacataacgTTTTAATAAGCCTTTGTAGATGGTCTATGAATGCTCTAAAGAATAATATGCCTAAAATGGAAGCTGTCGAGGGGTGAAGTGAAAAACCCCCAGGTGAGGTGAGGGCCTGTTTTTCCATCCAAGGCTAGATAATGTGGTTTCTAGTTTGCATTGCGATTTTTGCCTTGGATGTATTTGTCAGACACACTTTGCATCAAGATGACATTCAGTAACTAAATCCTAGGATCCCTAGAAAAGCAGAGAGGTCCTGCTGGACAGAGCTGCCAATACGCAGCAGATTGTCAAAGATAGTGTAAGCATTGAGTGGCCTTTAAATGTCCTGGTGATTTCTTTATAGTGCTTTGCTCGAGTCATAGTACTTGACCAGCAACGCAAAGCCGCTTAGAATATGATCCAAACACAATTCTTAAAGTGTCCTTATATGAATTGTATGAACCATTAATCTGCAATTTGGGATTGAAGGTTGGAACCGTTTTAAACCGGCCTCTTGAACGACTGACTAACTGTCCGTCCTTGTAGGCGTTTGGCCAGctcctcagtgtgtgtgcgtgtgggggTTGTGCTTTGTGTTAGGTGCATGGATTGTGTGGCTGTGCCTCCGCTTTCCAGATTATGTCAATGGATGTACAATGCAGGAGAAACGGTGTagtctgtgtttgtcagtgtctgtcttttgtttttgtttaatctttgaaGTATTGTTCATGCTAATAGGGGTACAGCTGCAACCAGGAACTAAGTTGTTACACTTTGAATGTCCTCTGCAATTACAATCATTCTCTCTTCTTCCCCCCAGCCCTTCTCTTAAGAGCTGTGATAACTGTATCAGGAAACGATTTGAGGTCCCTTGGCCAAATGGTTTAAGACCTGCCTTCCCAGTGATTTTGATTGCCATTTACAAGCAGTGTACCTCTCGGCTCATAATTTATGCAATCCCCTGACATTCACTTCAACGAATATTCAAAAAGCATCTTATGCTTCCTGAAATGTCAGATCGGATGTGCCCATAACTGTATTGGTCAGGGTTCAAGGTTTCCCTCCATGACCATGAGAGAGAATAGTTTTGCAAGGTTTCCATGGCAAAAAGAGGGAAGGGAGGGAAGACAACATCGAGGAATCTTTTGGATCTAGCCTAAACTTTAACGGTTAATGTATTAGTGTATATCTGTAATGCATCTCTGCAAATCTGCTATAacaaattggttttattttttctttaataaattattccCGATGTTCTGCAAGATTCTGTCTGTAAAAATGAAGTACAGATTTCCTttatagtgttttgtttttagttgtgGAACTAGTGCATCCAGTAACTTTAAAacctgtattattttctgttctttagtATCTTAGTATTTTCTGTTCCTTTACTTCCTAAAACGAAAGTGAATGGGGGGAAATGAATTATGACTTGAGTGACGGTATCATTTCCTGGTGATTTTTAATTGGTTCAACAAAGAACTTTTCTTGTGGCAACTTCTTAGGAGGGAAGGGTTACTAATTTCCAGCCtgttatattcaaaataatatatatacagcaagacaacattcagtttattttaatattttcttaaactatttttatacatttaaaaccacttTAGAAAATGCAGCTGCATTAAACTTTCTGAGTTCACTGCCACACtaattctaatttaaaaaaaaaataatgtataatatataaaatcatgtataaaacaatgcaaacataCTACTTTGTCTGAAGCTATGGGTccaaatggtaaaataaattcataatctAAGTAGAGAGCAGATTTAATATGaatcacaatacaaaaataatgttacttattaaatactatttaaacAGTTCTGTTTAAAGGAGCTATTGGCAGGCCTGCAAACAAACCTGTGTTCATGCCTTCCTTTCTATCCTTAAggcttaaaatacatttggcaAAAGGTGCTTTAGACTAaatattctgttatttatttttctaataaagcTTGAATAAAGTTTTGTTCAGCAGCAGATTTGAGAGGTGCGCAACAGAATTGATTATTGCCTTGTTGCACCTCTTGGGTATTTTTTCAATATGCGAAGCAGCACAAACAACTTGAGATTTAGGACTATTCTTCTGCATTTTCTAATGGAAAGGTCCTAAATTTGTCGTATTTATATCAAAATCATGATCCTTTTCATGTAGGGACAATAATGAGATGTTAATTTGAGCTGTGTACTCCTTGTGCAAGAAACTTTCAGATTGAACTATTTCACCACATTTTAAATTCCACAGTCTACAtttaaaattcattatttttttatttttttcgtttgtttttttgttattgtgataCTTTACCTAGCACTGTTGTGTTTTAGTTGCTCGCTTAGATGtccaaatgtattgctttttataaaGGTGGTGACACTGATATGTTCTGGAGATATCTTCGTATGTATTTATGCAAGTctttatgtgattttttttttggtt

Function

NR:

description
PREDICTED: translocating chain-associated membrane protein 1-like 1 isoform X2

GO: NA

KEGG:

id description
K14010 TRAM1; translocating chain-associated membrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008151 True 4528 mRNA 0.40 11 43962078 43972300

Neighbor

gene id symbol gene type direction distance location
AMCG00008152 ncoa3,LOC107090280 coding downstream 40050 43897216 ~ 43922028 (-)
AMCG00008148 mrgbp,LOC106566471 coding downstream 285701 43666568 ~ 43676377 (-)
AMCG00008147 NA coding downstream 406045 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 522012 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 529992 43411209 ~ 43432086 (-)
AMCG00008159 col9a3 coding upstream 72633 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 101363 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 749439 44721739 ~ 44740915 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 776790 44749090 ~ 44752458 (-)
AMCG00008163 NA coding upstream 804353 44776653 ~ 44778533 (-)
G28907 NA non-coding downstream 66127 43894179 ~ 43895951 (-)
G28900 NA non-coding downstream 68270 43863607 ~ 43893808 (-)
G28532 NA non-coding downstream 1367218 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1461082 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1485088 42475720 ~ 42476990 (-)
G28914 NA non-coding upstream 23818 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 514910 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 694043 44666343 ~ 44666577 (-)
G28977 cdh4,LOC101161393 non-coding upstream 707516 44679816 ~ 44680042 (-)
G28978 NA non-coding upstream 709125 44681425 ~ 44681769 (-)
AMCG00008144 phf20,LOC107727854 other downstream 378665 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 841914 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1197424 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1561004 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1872585 42083474 ~ 42089493 (-)
G28970 NA other upstream 445574 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1177201 45149501 ~ 45228504 (-)
G29301 NA other upstream 2078395 46050695 ~ 46054346 (-)
G29361 NA other upstream 2508646 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3607839 47580139 ~ 47607012 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021429 zgc:113278 coding NC_007134.7 CM002907.2 4226341 ~ 4243553 (+)