AMCG00008152 (ncoa3,LOC107090280)


Basic Information

Item Value
gene id AMCG00008152
gene name ncoa3,LOC107090280
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43897216 ~ 43922028 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008152
gaaGTAGCAGGCAATCAGACGGGTCCAACTGGAAAGGAATTGGCAGACTgcccacaaaaacaaactaagcCGTCACAGTGACAGATTATAGGCAAAGAAAAACCCAGAAGTCTTGCAAGAATCTTCCTGAACTGTTTCTATGGACGTCCATTTAAGTCGCTCTGATCTGGACTAAGGTGGGATGTGATGTCGAATACGGCTTGAAATCATAATTCTATACTGCTATAGAGGTGCTGATATGAGTTTAAGATGAGTGGACTGGGAGACAACTCCTTGGACCCTTTGTGCTCAGACCGGAAACGCAAGCTCTCCACCTGTGACACGCCAGGGCTGGGATGTGACAAAAGACGGCGCGAGCAGGAAAGCAAGTACATCGAGGAGCTCGCCGAGCTGATTTCAGCAAATCTCAGCGACATCGATAACTTCAATGTCAAGCCTGACAAGTGTGCCATCCTCAAAGAGACCGTTCGTCAGATCCGACAAATAAAGGAACAAGGGAAAGCATCCTCAAACGACGATGACGTCCAGAAGGCTGATGTGTCCTCAACTGGTCAGGGGGTCATTGACAAGGACCACCTTGGGCCCCTCCTCTTGCAGGCCCTGGATGGCTTTCTGTTTGTGGTTAACCGAGAAGGCAGCATAGTGTTCGTTTCGGACAATGTGACGCAGTATCTGCAGTTCAAGCAGGAGGAGCTCATCAACACCAGTGTCTACAATATCCTTCATGAGGAGGACCGCGAGGACTTCCACAAGAACCTGCCAAAGTCTAACCTGAATGGGGTTTCATGGAGTAACGAGGCGCCCCGCCAGAAGAGCCACACTTTCAACTGCCGCATGCTTGTGAAGTATGGCCTCAACCCCTCGGAGGAAGGCGCCGGGAGCCTGCGCTATGAAACCATGCAGTGCTTCGCCCTGACCCAGCCCAAGGCCATGATGGAGGAGGGGGAAGATCTGCAGTCCTGTATGATTTGTGTGGCGAGACGTGTTACTGCAGTCGAGAGGACGGAGAGTTTCATTACAAGACACGAGCTGTCCGGGAAGCTGATACACGTGGACCCCAATTCCCTGCGTTCCTCCATGCGGCCAGGCTGGGAGGACCTGCTGCGCAGATGTATCCAGATGTTCATGCATCACAGCGAGGGGCAGCCCTGGTCTCACAAACGCCACTACCAGGAAGCCTACATGCAGAATCACGCTGAGACACCTCTGTACCGGTTCTCTCTGTCTGACGGCACTCCAGTGACCGCACAAACCAAAAGTAAACTTTACCGCAATCCAATGACCAACGAGCCCCAATGCTTCATATCCACTCACCTGTTGCAAAGGGAGCAGAACGGATACCGTGCAAACCAGGGACCGGTGATGCAGGGCATGAGACCACCAGCGATGGCCAATGCCAACCCCAGTGCCCCCATGAACATGCCCCCTGCTCCAGGGATGGGCATGGGGATCAACAGGGGCTACGGCATGAGCGAACAAGGCCACGTGGGCCAGATGGGGGGCTCCATGTATGCGGGTGGCAACAGGATGATGCAGATGAACCAAGTGAATCAGATGAACTCCATGAATCCGATGAATCAGATGAATCCAATGAATCAGATGAACCAGGTCAACCAGATGTCTCAGATGAACCAGATGAATCAAATGAATCAAATTAACCAGATGAATCAGATGAATCAAATGAATCAGATGAACCAGATGGGCCACCCTGGCCCCAccatgcagcagcagcagcagcagcagcagcagcagcagccacctTACCAAGgtcTTCACTCTCCAATGGGTCCGGGCAGTGCTGGTGGAGCCGGGACTGGAGGAGGGGGCAGTAGCTACTCGAGCAGCTCACTCAATGCTTTGCAAGCGATCAGTGAAGGTGTGGGCAACTCCCTGCCCTCCTCTCTGTCCTCCCCTGCCCACAAACCCGACAACTCGCCCAGCATCAACTCttcgcagcagcagcagcagccgcctccaccacagcagcagcagcaacagagcCAACAGTGCAAGCCGAGTCGTGTGGACTCCCCGAGCCCAGCAGGCATTTACAACACCGGGGGGGATCATCACCACCACctgcaccaccaccaccaccaccacaacccACCCGAGAGTGCTGCGGACCGGCCCGACAGCCAGGCCAGCCTGAGGGGGAACAAGGAGAGCAGCGAGGCAGGGCCAGGTAACGCCGAGCCGCAGCGAAGGATGCCAGACAGTAAGGGCCACAAgaaactgctccagctgctgACGTCACCCACGGATGACATTAGCATGGTGGCCGGGGGCGTCCCCCCATCTGGCGCCACCACGCCCACCTCACTGGACTCCAAGGAGCCTGTGGGCTGTGTCACCAGCCCCTCGTCTACTGGcgtctcctcctcttcctcagctTCTGCAGGTCAGGCCCCTGGTGGGGTCTCGTCATCCTCTGCAGGGGCTCAGCATGCAGCCTCCTTGCAGGAGAAACACAAGATCCTCCACAAGCTGCTGCAGAACGGCAACTCCCCAGACGAAGTGGCCAAGATCACGGCCGAGGCGACGGGAAAGGAGAACGCTGGCCACGAGGCGGGATCGGCAGACATGGGGACCATGACGACAGCTGGCGCAGGAGGAGGGGCTGGGGCTGCAGGAGCGGGGGTATCAGACATCAAGCAAGAGCAGCCCAGCCCCAAGAAGGAGAAGCCCAACGCCCTGCTACACTACCTCCTGAACAAGGATGACTCCAAAGAGCCAGCTGATGTCAAGCCaaagctggaggagctggaggggAAGAACTCGCAAGGGACCTGCAGCAGCTCGGGCATCATGGCCTCGACTCCTGACAGCGGAGAGAACAAGATCAAGACCGAGCCGCCAGACGAGATCGATACCCTGGAGACAATCTTGGGAGGTCTCAGAAACCCCAACTCCAGCTTTTACCAAGAGTCTGGTGCGGGGGGAGGGAATGACGGCGGGAACAAGCAGAATAATTGTTCAGAAGATAGTGTGCATGCACTGAGGAGCTCTGATATGGCGCCTGGACCCCGGGCCCCCTTCCAGCGCACCATGTCTATGGACGGGAAACCACCCACGGGTGCAAACTCTGCCGGTCGGCGCAGCGCCCCCCTCACCATGCCCATTAAACAGGAGAGCTTGGACAGCCAGCGCATGATGGGGGGGCCAGAGAGCTTCCCAGTGAACATGGGCATGGTCAACAGAGGGATGGGCGTCCCTCAGCGCTCTCCCATGGGGGGCTCGGGGGAGTGGGGGCTGCCAAGGTCGAACGCCAGCCCTGTGGGCTCGGCTGGGCATCCCTCCATGATCCGCCCAGGAATGGACTACAGCTCCAAGGCCATGATGGGAGGTCCCCTGGTTGGCAGGTCAAACAGTGTGCCGGGCAGGGCGTCGAtgctgcagcagcagctgaTGGATATGGGACCGAACGATATCAACATGGGCATGAGTCCCTTCAGTCAGCAGGGGCATCCTAGCCAGTCCCCTTCCTGGCCTGACAACGTGATGGATCACGGGCCTCAGAGCAGCCAGAACAGGTACACCCAGTCTTCCCTGCAAAATACAGCCAAGACCCGGCCCAGGAGACCGTTCGGTAACCCCCTGGACGAGCTGCTGGTTCCACCTTCCACCAGCGAAGGGCAGAGCGACGAGCGCGCCCTGCTGGACCAGCTGGACTCGCTGCTCAACAACACCGATGGCATCGCACTGGAGGAGATTGACCGGGCGCTTGGCATCCCCGACCTTGTCAGCCAGGGCCAGGGAGTGGATCCCCAGGGTGATCCCTTCCCTGGGCAGGACCCATCCATGGTGATGGACCAGAAACCTCCCATGTACAGTCAAGGCTACCCCGGACCCCCAGGCATGGCAATGCAGCCCGCTTATAACAACCCCATGCAGGGGCAGCCCGCCGGCTTCAACCCCATGATGAATCCGATGAGCCAGCAGGGCAGCTTCCCCATGTCTGGGATGCACCCCCGCGCAAGCATGATGCGGCCGCGCATGATGAACGCCCCCAAACCGCTGCGGCTGCAGCTGCAGCAGAGACTGCAGGGCCAGCAGTTCATGAATCAGAGCCGCCAGGGCCTTGGGATCAAGATGGAGAACACAGCTGCGGGGAGCCCGGTGCTGCGGCCCGGCATGCAGCCCCCCATGGGGGGACAGCCTGGCTTCCTGAATGCTCAGATGATGGCCCAGAGGAACCGGGAGATCCTGAACCACCAGCTGCGGCGCCAGCGGATGATGATGCTCatgcagcaccagcagcagcagcagcaggcagcgGCCGCGGCCGCCGGGGGCTTCAGCCCTCCACCCAATGTCACCGCGCCCACCGGCATGGAGGCCCCCATGGTCCAGCCTGGTGCACAGTTCTCCTACGCCCCCAACTACGGGATGAACCAGCAGGGGGACCCTTCATTCGTCCGAGCAGCCAGCAGCCCCCCCAGCTCCATGATGTCTGCCCGCCTGGGGCCGCCCCAGAACCCCATGATGCAGCAGCACCCCCAGAGTGCGCCCATTATGATGATGAACGGCTCGATGCCCGTCAATGGCAGCGGGGCCCACATGGGGCAGCTGCAAGGGCAGATGAACATGAATCCCATGGCTATGGGGCGGATGCCAATGGGACCAGAGCAGGTGCGCCCTCTTCCCATTTGA

Function

symbol description
ncoa3 Predicted to enable nuclear receptor binding activity and nuclear receptor coactivator activity. Predicted to be involved in cellular response to hormone stimulus and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including margin; nervous system; neural plate; neural tube; and tail bud. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NCOA3 (nuclear receptor coactivator 3).

NR:

description
PREDICTED: nuclear receptor coactivator 3 isoform X1

GO: NA

KEGG:

id description
K11256 NCOA3, ACTR, KAT13B; nuclear receptor coactivator 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008152 True 4653 mRNA 0.59 23 43897216 43922028

Neighbor

gene id symbol gene type direction distance location
AMCG00008148 mrgbp,LOC106566471 coding downstream 220839 43666568 ~ 43676377 (-)
AMCG00008147 NA coding downstream 341183 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 457150 43432676 ~ 43440066 (-)
AMCG00008136 trpc4ap,LOC106582896 coding downstream 465130 43411209 ~ 43432086 (-)
AMCG00008139 NA coding downstream 488283 43396590 ~ 43408933 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding upstream 40050 43962078 ~ 43972300 (-)
AMCG00008159 col9a3 coding upstream 122905 44044933 ~ 44071985 (-)
AMCG00008158 NA coding upstream 151635 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 799711 44721739 ~ 44740915 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 827062 44749090 ~ 44752458 (-)
G28907 NA non-coding downstream 1265 43894179 ~ 43895951 (-)
G28900 NA non-coding downstream 3408 43863607 ~ 43893808 (-)
G28532 NA non-coding downstream 1302356 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1396220 42500677 ~ 42500996 (-)
G28509 NA non-coding downstream 1420226 42475720 ~ 42476990 (-)
G28914 NA non-coding upstream 74090 43996118 ~ 44000866 (-)
G28973 NA non-coding upstream 565182 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 744315 44666343 ~ 44666577 (-)
G28977 cdh4,LOC101161393 non-coding upstream 757788 44679816 ~ 44680042 (-)
G28978 NA non-coding upstream 759397 44681425 ~ 44681769 (-)
AMCG00008144 phf20,LOC107727854 other downstream 313803 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 777052 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1132562 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1496142 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1807723 42083474 ~ 42089493 (-)
G28970 NA other upstream 495846 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1227473 45149501 ~ 45228504 (-)
G29301 NA other upstream 2128667 46050695 ~ 46054346 (-)
G29361 NA other upstream 2558918 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3658111 47580139 ~ 47607012 (-)

Expression


Co-expression Network