AMCG00008153


Basic Information

Item Value
gene id AMCG00008153
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44040778 ~ 44044810 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008153
GCCGCCGCCTCCGGAGCCCTGTCCCGACGGAGCGCAGGAAGTCGCCGTGGCGAGCGGGGGCGCCGTGGGCGGCAGTGAGCAGGGCCTGGCGCTGGGCGCGGAGCTGGGTCTGGTGGAGATGACCGAGGTGGAGTACACGCAGCTCCAGCATCTCATCTATGAGGTGCAGGTCGCCGAACAGGACGGGCCGGGGGAAGCGGGTTTACCCCCGGACGTTTATACCACAAGCCAGCCGGCCCAGCAGACGGGATACCAGAGCCCCCATCCGCACGGCCAGATAGAGTACGTGTCGGACAGCAGTCCCCCCACACCCGAGTGCGCCGCCCCCGCTCGGCAGCACGACCCCTGCGACGCGCCCGGCTGGTCTGCCACTGCCGACCCGGGGCCGGCGCACTTCCAGCAGTTGAAGATGATCGTGATGAGCGACCCCAGCTCGGCGGAGCGCACCCCGGCCGGCCGCGGACAAGTCGCCGGCTCTGTTTTTGCCCGAGTGAGGAATGCGACGGAGACGGAGCGAGAGATTAGAGGCGAGGCCGGCGAGAGCAGAAGGGCCGTCCCGGACACCAGAGCGCCCCCCGCCGCCCGAGTGCGCCTGGAGAGGAGGTTTAACAGCAGCCCGTCCCCGCTGTCCAGAGCCCCGGACTGCCAGTCCTCATCCGGCGCCATGAACAAtttcctgTCGATGCTTCACCATCCATCAGAGCTGCCGGGGGTGAGCATGCAGTCCCAGCAAAATAAGTACCTCAGGATGGGCAGGAGCAAGAGCGCCCTCTCTGCGGTGCCCCTGGAGTTCGCCCACCCCCTGTATGGTGCCAGCCTGTGCAGCTCATCAGGCAATATCAGTTCCTCTCAAGCACAGACAGTCGGAACCATTGCACAGATGCTGGAGTCCACGAATCCCAGAAACTGCACCTTTCATTATCAGCAAGAGAGAGATTCTTCAAAACCAGCAGTCCTTCAGCCAATTAAGTCTGTCGTTGAGCAAGTATGGGTTAAAGTAGAAGAAGACACATtgcagaaaaacatattgaacaAGCGCAGCCGGACCGGTGGGCGTCAGGTGGGCACTGAGCGGCCCGCTCTCAAAGATATCCAAAACATACCCAGGGCCCAGAGCAGCAGAGCGCCTGCTGGCACCCACAGGAAGGGCAGTGGGGAGGAGGAGAACTTGCGCAGAGAGAAGCACAACAGCATGGAGCGAGACCGGAGGCGACGCATTCGGATTTGTTGTGACGAGCTGAACTTGCTGGTTCCGTTCTGCACCCCCGAGACGGACAAGGCTACAACACTACAGTGGACAACAGCGTTTCTTAAATACATTCATGAGATCGATGGAGACCGCCTTAAAACGGAGTTTGAGAGTGTGTTTTGTGGCAAGACTGGCAAACGCATGAAACTTGCTAAAGCTGAACAGTTTGTTGCTCATGGAGAGGCTAGAGATCCACcaaacactgcactgctggAGCAGAAGTGATCTTTGTAAAAGGACATATGCACAAGCAGGATTTATTTGCAACAACGCCAAACTAATGCTCTGTTTGCTTTCATACAAACACAGGAAGAATGTAAAACAGTTGTGTAATCTAGTTTACACCCCGAAATACCTTTCCATCTTTACCTGGCTGGTAATTTACAGCCACAAAACAGCATTCAACAATTGTGTAGTTTAGTGTAAGATCATTTGAATGGTCTTAATATAGTATGTTAGTCCAATAAATTAAAACGCtatgattaaaaacaatgcagccATTACAACCCTGTTGAAAGCCCGCACATCTTATTTCGAAATGTCATTGGATCACATAAGAATGCTTCCATAGTCTAGTTCAGgggctttatttttaattttaataaaatattcaagaaCCCaacattagtttaaaataaggtTGATATCcctatgtattgttttacaacCCAAACCACACTAACCACAGTCAGCCGTTCCCAGGAGACCAGGTATTAGCTGTGAcagcactgtttttgttttgtatggctCCTATCATGGTATAACAGTGGCACCAACAAATCAAGTCCTGTCAGACTAAATAAAGGACATTTGATcttttattacaaaacacatttgaaactttattcgattttttttttttttttgtggaagaTTGTGATACTTTGTAAatgtcaaaaaagaaaagaaaattaaactggaaaataaaagtacatgGAACTGTTCTACAGAAAATGTTCCAGAGGTGGCACTGTTTCTCCATGATAGAtgcaaattgttaaaaaaaaaataaaaactgccagGTTTTCTCCAGTGGctcaatgcattattaatactCTAACTTGCATATGAACATGTACAGATAAAATGATTgaatttaatatgtaaatatatgagaTACCAAAATTAGTTGTTTGTTCCCTATCAAAGGTAGCTATTTCACCATCAATATCTTACCTGAGTTTAGTATTAGAAAaggatgttctttttttttccttgagagcatttgatttaaattattaagaGCATTGTGACGTGAGAAACGTATGTTTTCTAGTTTAATATTGccggtttgtttttcttcatttgtgcCTATATTTACA

Function

GO: NA

KEGG:

id description
K09092 TCFL5, CHA; transcription factor-like 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008153 True 2571 mRNA 0.49 6 44040778 44044810

Neighbor

gene id symbol gene type direction distance location
AMCG00008156 NA coding upstream 4651 44034386 ~ 44036127 (+)
AMCG00008155 NA coding upstream 6438 44001734 ~ 44034340 (+)
AMCG00008154 NA coding upstream 40945 43976301 ~ 43999833 (+)
AMCG00008149 LOC106572085,LOC107705722 coding upstream 147680 43854025 ~ 43893098 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding upstream 345214 43678115 ~ 43695564 (+)
AMCG00008157 NA coding downstream 61645 44106455 ~ 44131719 (+)
AMCG00008160 NA coding downstream 215165 44259975 ~ 44268323 (+)
AMCG00008167 NA coding downstream 532562 44577372 ~ 44653905 (+)
AMCG00008162 cdh4,LOC106571924 coding downstream 620826 44665636 ~ 44683700 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding downstream 698820 44743630 ~ 44748571 (+)
G28862 NA non-coding upstream 144827 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 839575 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 919997 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1418621 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1454110 42584232 ~ 42586668 (+)
G28931 col9a3,LOC106571930 non-coding downstream 9155 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 646731 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 723867 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 751114 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 1308906 45353716 ~ 45354079 (+)
AMCG00008132 NA other upstream 735248 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 884706 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 932536 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1603550 42413632 ~ 42437228 (+)
G28395 NA other upstream 2047401 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 978338 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1102587 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1295764 45340574 ~ 45343914 (+)
G29183 NA other downstream 1395703 45440513 ~ 45441064 (+)
G29353 NA other downstream 2223081 46267891 ~ 46268327 (+)

Expression


Co-expression Network