AMCG00008154


Basic Information

Item Value
gene id AMCG00008154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43976301 ~ 43999833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008154
AATTGCTCCTGCCTGCTTGAGCTGAACAAAGATAATTACTCAGGAAATGTTTCAGCCAATCCGCTGCCGCCTTACATCCTGGTAGTGAAAAGAGGCCATTCAGGTTTGgctgaagaagaaataaaaactgagCCAGATGTGGTAGAGGGAATGGACATCTCTACACGGTCCAAAGTTTCAGATCCCGGGTCTGCGGAGCGAGCAGCACAGAAACGAAAGCTTCCTAGTCCTCCACATTCTTCCAATGGCCATTCCCCTACGGACACATCACCAAGtccaataaaaaagaaaaagaaacctggCCTAGTTAACAGTAATAACAAGGAACAGTCAGAACTAAGACATGGTCCCTTTTACTATATGAAGCAGCCACTCACCACAGACCCTGTTGATGTTGTACCACAGGATGGACGGAATGACTTCTATTGCTGGGTGTGTCACCGAGAGGGCCAGGTCCTCTGCTGTGAGCTCTGCCCCCGGGTGTACCATGCAAAGTGTCTGAAACTGACAGCGGAGCCCGAGGGGGACTGGTTCTGCCCAGAGTGTGAGAAAATAACAGTAGCGGAATGCATAGAAACGCAAAGCAAAGCAATGACAATGCTAACAATAGACCAGCTGTCTTATCTCCTTAAGTTTGCACTACAGAAGATGAAGCAACCTGGGGACCAACCACGCTCGTCTCTCTCACCTCATGCAGCTGCCCACCAGAGAAAACCTATTAATTGgACAGAGCCATTTCAGAAGCCAGTAtctctggaacaacatcctgattacgcagaatatatttttcatcctATGGACCTCTGCACGTTAGAAAAGaatataaaaaaaaaaatgtatggctGTACAGAAGCTTTCCTCGCTGATGTGAAATGGATTTTGCACAACTGCATAATTTACAATGGAGgtAACCATAAGCTGACGGCAACAGCTAAAGTCATCATCAAAATCTGTGAACATGAGATGAATGAAATAGAAGTTTGCCCAGAATGCTATCTGTCAGCTTGCCAGAAGAGGGAAAACTGGTTTTGTGAACCTTGTAGTAACCCTCATCCTCTTGTATGGGCAAAACTGAAAGGATTTCCATTCTGGCCTGCTAAAGCATTGCGAGATAAAGATGGGCAGGTTGATGCTCGATTTTTTGGGCAGCATGATAGGGCCTGGGTCCCGATAAATAACTGCTACCTCATGTCTAAAGAGATTCCTTTTTCTGTGAAAAAGACTAAAAGCATCTTTAACAGTGCCATGCAAGAGATGGAGATCTACGTTGAGAACATACGTAAGAAGTTTGGTGTGTTTAACTATGCCCCCTTCCGGACACCCTACACTCCCAACAACCAGTTTCAGATGCTGCTCGACCCGTCCAATCCCAGTGCAGGGACAGTCAAGCCTGAGAAACAAGAGAAAATCAAGTTCAATTTTGACATGACGGCGTCTCCTAAAATCATTCTGGGGAAGACTATGCTTTCAGGCGGCACGGGCCGGAGGATATCTTTAACGGAGATGCCTCGTTCCCCGATGAGCACCAACTCTTCGGTTCACACGGGCTCTGATATTGAGCAGGAAGAGAAAGGCATCAAGGCCCCAACGAGTCACTACAGTGCTGGGGAGGAGTCAATGGACTACACAGCGTCACCGGCATCTGCAAAGACTGGACCTGCTGGCAGTGTGACGGAGAGCCCCAAGCCATTCTCTTCTCAATCCTCTACACCCCTCGCTACCAAACAAGAGAGGACTTCTACTACTGGAAGCATCCTTAACCTTAACTTGGATCGCAGCAAAGCTGAGATGGACCTGAAGGAGCTGAGCGAgtctgtgcagcagcagcagtccaCGCCCGTCCTGACTTCACCAAAGAGACAAATTCGGAGTCGTTTCCAACTGAATCTGGATAAAACCATTGAAAGTTGTAAAGCCCAACTTGGCATTAATGAGATTTCTGAAGATGTGTACACAGGAGGCGAGCACAGCGATTCTGAGGACTCGGAGAAATCGGACTCTAGTGACAGCGAGTATATGAGCGACGAGGAACAGAAGCTGAAAAACGGTCAGGAAGAGGGGGACGACAAGGAGAAAACCGAGCGGGACTTAAAGAAGAAGCCCAAAGCACCCTCCCAAAGCGACGAGAAGGAGAGCAACGCCGAGAGCACGGCGGCAGAGAAATCCACCGAACTGCCGCCGACGGAGAGGCCGAGCACGGATTCGGAGAAAGAGCCACCGGAGAAACCCAAAGCGCCCCAACATCCGGCGAAGGAGAAGTCCAAAACAAAAGAGGAGGGGAAGCAGACCTCGGTGGATGTGGACATGGACTCCGACTCGGACCGGGAACTAGTAATCGACCTCGGAGAGGACCCCAGCCGTGAACGCAAGAAGATCAAGAAGGAGGCAGGCTCTGTCAGCACGGCCAAGGAGGCGTCTGCAGTCAAGCTAGAGGGTAAAGCCCCTTCTTCCAGCACTGCTGCCCCACCTGCAAGCGATGTTTCCTCAGCTTCCAACGTCAAAGACCCCACTCAGGCTTCCATCACCATCCCGATTAACGTTGTGTCTTTCGCTGCTGCCTCTCTCGTCCCCAACACGGCTTCAGCTGCCGCGGTGAAGAAACAGCGCCCCCTGCTGCCCAGGGAGACGGCTCCGGCAGTGCAGCGGGCCGTTGTGTGGAACCCCACCAACAAGTTCCAGACGTCCTCACAGAAGTGGCATATGCAGAAGGTACAGCGGCAGCAGCAGAGTCAGTCGCAGAGCCAGGCGCAGAGCCCGACGCAAGGCCAGACCCAGACGCCAGGCCAGAGCCAGTCCCAGAGCCAAGGCCCGGGCCAGAACCAGGCTCCACAGAGTCAACCGAGCGCCCAGCCCCAGCGCAGTAGCCCTCAACAGCAGCCGCAGTCCCAACCGCAGCCGCAGTCCCAGCAGTCTGCACCTCAACAGCCTTCCCCCAGCACACGATACCAAACAAGGCAGGCCGTTAAAGCCGTACAGCAGAAAGAGGTCACTCAGAGCACGTCTACATCTTCTGTGACTTTGGTGACGAGCACTCCATCCGTTTCTATGATCACCACACCTGTCACGGTCAGCACGCCCTCCTCGTCGGTCACGTCTGACTTCCAGATCGCCACCACGTCGGCCGATGTAGCAGCAGATATCGCCAAGTACACCAACAAAATTATGGATGCAATTAAAGGCACGATGACTGAAATATACAACGATCTTTCAAAAAGTACATCGGGCAACACAATAGCAGAGCTCACGATGGCAGAAATGCGCCAGAGCTTGGAGCAGGAGCGAGAGCGGCTCATCGCCGAGGTCAAGAAGCAGATGGAGCTGGAGAAGCAGCAAGCGGTGGATGAGACGAAGAAGAAACAATGGTGTGCAAACTGCAAGAAGGAGGCAATTTTCTACTGTTGCTGGAACACTAGCTATTGTGACTACCCGTGCCAGCAGGCGCACTGGCCCGAGCACATGAAGTCCTGCACACAGTCGGCCACTGCTTCTCAGCAAGAACCTGAGACGGAAGTCAACACAGACATTGTTAGCAAAACCTCTGAACCACCCACTAGCGTTCAGTCACCGCCCACGGAGACTACAGCTGTACCAACTGAAAAGGACTCCACTGCAGAGAAATCCAAGGACAGTGCATCTGTTAGTGTATCCTAACCTTTATTTAACTACATTGCAAACATTTATCCTTGTATGTATTCAGTGTCAATGTCTAATTCAGGAAAGGCTTTTAAAAGCGAAGTTTCTTGTTATGCCAATCCGAGAATGCAAATGCTTTCTGACTTCAGTATTAACAACCTGAGAATCACCCTTCACCtcgccacccccccacccctctgctcATCACACAACGATGACTGAGGGCGTAATAGCAGTTGCTCCATAACAAGTAGAAGAACTGACTTAAGTACAATCAAACTGATGAGTCTTACACAATTCAGAGGAGATGACTTCCACTTTGAATCAGACTTTCCGATACTGCAGTTTCAGTGTCTCCTCTCGAGGTCACTGATTTCTTTTTCAGAATTTGAGAATGCTTCTCTTTCTGCTTCTGTGAATCGAGGGCCTCTTGTCCAAAGATACTTTGGAACGGGAGGCCTGGTTCCAGGGTGTAGGAGACCGCAATGCAAAATGCAATCAATACACATAACGAACCGAGAGGATGAGGCACTCTGCAATCTAAAGCAAGGATAAGGGAACGTGTGACTGTCTTGCCAGTTACATACACTGCCAGTCCCAGATCCTCAGGTCAACTGTTAATCCTGTGTCTGCAGTAAGGAGTAGATTTCAGCAACAGCAGCGCAACAGCTCCCGACAACGACAGAGCTGTTTAAGGATGAGCAAAGAAGTTTCTGGAGGTACCTAAGTGACGATTCCTTTCTGAGAAGTAATACTTGGTGGGGAAACCTTGATTATACAAACGACCTATACAGCCTTGATTTATTACAGCTGCATAATCCATGGCTTTCTCATTAACCTTTGGTACGCTCTCCGGTACCCCTATCATACGTGGAACGGTTGGAGTCCCTTTGCGGTTCAGTCTCACTATGAGTATATATTGTATCTGTATGTGCCTTGCAGATGTCAGTGGGTTAGATCCATCGGTGGCCGGTTTAGAACTGGCAAGGGTGGGCGGGGGGTTTATTTTGTAGATCTCCAATTTCTCTGTTAGATATATGTGAAATAAGCTGGCGATGGGCAAATGCAATTGAAATCCTATGATTTAATAGTGTGTAGAAAAGACCAATCCAATATTTCCAtgggggaagaaaacaacaccATTTTTCTAATTGTAGCTTGCGATGCAGCTTTTTGTAGACCTGTCTTGAAAGACCCCTTTCCTCAGTATACATGGCAAGGGACAGGCATGACCGGTCCAGATAGCACGACTCCTCCTTTTATACACACTTTTAAACCCACTATAGTGCGTACAGAACCGATCCACACTTACAGAAACTGTGCAGTATAAACCTTCCATAgagctaattatttttttgttttatttattttaatttataaggGATAGTGGCATCTCCAAAAATGGCATTACTGTGTAACTAGCTAAaaacttaatttacatttttaaattcagaatgaaagtttttttgtttttcttagggggggtactgtttttttttttttttctcccatttattttcttctgatctTCCTATTTGTATTCCCATGTACATTTGAATAGATACACATCTACTTCTGTTtaccagataaataaatatatataaattatatagagTTTAATGCATAGAGATTCCAAACTATTCAGACAGTCCTACAGATACAAGCTCATTTAAGTCtttataaaaccaaaatagTTTTACTCAGAGCATACTTTTCAGCCATGAACATGACCGCGCCATCAAATGTCCAAGTGCGAGGGGCTTGGGTCACGTGTTCCTGGAAACGTCTGTTCTATAGATAGATGCATTGTGAAAATACACTGGAATGTCAATAGAACCCTTTGTTCAAACTGCCTGTTACAATCTCTCTGAGTAGGGTCTCATAGTTCCATTGTGTTGACTGTTAATGATATACTTTATGTAATGGTATGATTCCTccctacagaaaaaaaagaaaacaaaaagtgactGTATACTTCACATGAACAAGCTGCCTTGCAGCTTTTGTGTTTACATTATGTAAATAAAGAACTGGGGGTCAAAAAGAACAGATCTGTCAAGAGCCTTATTCTCGTGATTGTATAGGACCATACCTCAGGATTGCTGAGACGGACGTGCTGATAATGATTTGGTATGCTTGCATGAGAAGACGTTTCGACGTGAACTGGCCCTTTTGCATAAGCTTTATTGTGCAGCACAAGTTATGAACACCACAATAGGCGACCTTGCCACAGTGTATTTATATGCAGTCcatttagatatttatatataatatgattcTACCAGAGGTCATTTAACACCAGACGTTCTAGAAACTGAATATCTTGATTTTCTCCATgctgtttgtttaattagaaTCTTGTACTGCTGCAGAAACTCCTTGTCTATTTTATTGTGGTGTTTTAGATTGGATTGCCTACaatttttacaatgttgcctTTTGTTTCGTTTTCATCTGTGcaacattgattttattatggCAAGCAATTTGAGTATAGCACATTTACAACTGTCTCTGTTCTCTGGAAACCAATGAACATTAAGTGTTGAAaacagtttatttctttaaaaatataaaaaataatacaaaagttaaAATGGGGAGCCACACCcacattcatataaaatgccTGACTTAACCTTAAAGAAATTATTGGCAGAGGAGACCCATTTGGagatttcaatgtatttacagGTGACATTTGGTGGGCTCATTTCGGAGTGACACACTCCTCTTCGCCTATCAGGTTGCAAGTGGTTTAGATGGCCGCTATTAATATAGCTTAACTGTTCAACAGTTTCTTGATGTATAAAAATGGTTTATGTTGCCCTCTGCAGGTCAGCCCATTTTCTTGGTTTTGCTTTTCAGCATTGTGAAAGTTGCTGTACTGTACCCTAACACTTCCACACTTTATATTTACAGTTagtttatacatgtatgtgttgCTTGttagggtaaaaaaaaatagaaggttaaaaaaaatgtaaataacaccccatatgattttattttagtatttttgtttggttttgttttgtttttgtttcatttttttcaagttaaaacttttttttaatgtacagacAATCCCAGTAGTTGTTGCCCAAAATGCTGGGACTGTAGGCAATACAAGCAGGAGTTGCGGATGTCCAGACCACAATGGCAATGTTCATTTCCACATAGAGTAGAGCTGTGTACACAGGATGGAAGAGccgagtgtgtgagtgaggcAGAGAGACTGAAatagaacaaattaaaaggtgaatatattatatgtgaaacatgtaaaaatgtgaacCTGCTCGTCTGTGTACTGACCTTGAGAGGATGTGAAGATTGTTAATTTGTGTATAAGAACATGGGCTACACTACATTGTATAGCATTAGCTCCCTTTTCTTAATGAGCAGGGCTCCTTGTGTTGTGTGCTTCATATCCTGtcgttttttattatattattttgtaaataatgtgcAAATGTTGGATGTCattaaacatactgtacatttcatTGTCACCTTCATTcatctgttttaattgtttattttgtttggtgttttttttttttt

Function

GO: NA

KEGG:

id description
K24630 ZMYND8; protein kinase C-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008154 True 7200 mRNA 0.45 20 43976301 43999833

Neighbor

gene id symbol gene type direction distance location
AMCG00008149 LOC106572085,LOC107705722 coding upstream 83203 43854025 ~ 43893098 (+)
AMCG00008150 eef1a2,LOC108429306,LOC107724190,LOC107551525,LOC107705720 coding upstream 280737 43678115 ~ 43695564 (+)
AMCG00008145 id1 coding upstream 312593 43662564 ~ 43663708 (+)
AMCG00008146 hm13,LOC106572089,LOC106566469 coding upstream 355158 43605257 ~ 43621143 (+)
AMCG00008140 NA coding upstream 469248 43497288 ~ 43507053 (+)
AMCG00008155 NA coding downstream 1901 44001734 ~ 44034340 (+)
AMCG00008156 NA coding downstream 34553 44034386 ~ 44036127 (+)
AMCG00008153 NA coding downstream 40945 44040778 ~ 44044810 (+)
AMCG00008157 NA coding downstream 106622 44106455 ~ 44131719 (+)
AMCG00008160 NA coding downstream 260142 44259975 ~ 44268323 (+)
G28862 NA non-coding upstream 80350 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 775098 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 855520 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1354144 42621950 ~ 42622157 (+)
G28527 NA non-coding upstream 1389633 42584232 ~ 42586668 (+)
G28931 col9a3,LOC106571930 non-coding downstream 54132 44053965 ~ 44056608 (+)
G28956 NA non-coding downstream 691708 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 768844 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 796091 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 1353883 45353716 ~ 45354079 (+)
AMCG00008132 NA other upstream 670771 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 820229 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 868059 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1539073 42413632 ~ 42437228 (+)
G28395 NA other upstream 1982924 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 1023315 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 1147564 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1340741 45340574 ~ 45343914 (+)
G29183 NA other downstream 1440680 45440513 ~ 45441064 (+)
G29353 NA other downstream 2268058 46267891 ~ 46268327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022166 prkcbp1l coding NC_007134.7 CM002907.2 9809540 ~ 9864166 (-)
grasscarp (Ctenopharyngodon idella) CI01000021_03594629_03615777 PRKCBP1L coding CI01000021 null 3594629 ~ 3616329 (+)