AMCG00008159 (col9a3)


Basic Information

Item Value
gene id AMCG00008159
gene name col9a3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44044933 ~ 44071985 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008159
CCTGCTCAAATGTGTGTGACTTTGAGTTCAGCCCCTCCAGCTGGAGACTCGGGTTTATCTGGATTCAAAGTGCACTCATTCACGGGCTCCGAGCTGCAAGGTGAAGGACCGGTCCGTTTTAAAACGGGAGGAGAGAGctaaaaggagagagaaaggggtaaccccttttttaacatattaaaatcGGAGCTGAGAGGACGGGAGCCATGGCTGCTTTCTCGGCTCTTGGGCTGCTCTTTCTTTGCCAGCTGTTGACATCCTCCTCAGCCCAGAGACCTGGCCCCCGAGGACCGCAGGGCCTGCCAGGACCTCCGGGACCCCTAGGGAAGGACGGCACTGATGGCAAACCTGGTCCACCTGGACTGCCTGGCAAGCCTATCAGCTCCAAAGAGGTACCCTCAAAAAGGGACCCAAAGGGAAAGCAGGGGCACCTGGGTCTGCTGGAAATGCAGGGCTGCCTGGACTTCCAGGAGTGGATGGGGATGCAGGACCTCCAGGCCCAGGGGGACCTCCGGGCAGAGGGAAACCTGGACCACCAGGCGCACCAGGAGCCACTGGGTTGTCAGGAGGATTGGGGCCACAGGGGCCGACGGGACCTGAAGGGCCTTCTGGTCCTATTGGTCTTCCCGGGCCTCCTGGTCCCCCAGGTTTCTCCGGGGCTTTCCCTGATGGAAATGGCGATGCTTTGTGTCCTGCTATCTGTCCTCCTGGCCCCGCTGGGCTTCCAGGAATGCCAGGGTTCAAGGGTCACACCGGCCACAAAGGTGACAAAGGAGAAGCTGGAAAAGATGGAGAAAAGGGAGACCCAGGCCCTCCAGGTCCACCTGGCATTCCCGGAACAGTTGGCCTCCagGGTGATGCTGGAGAGAAAGGACCAGAAGGGTTCAAAGGACCAAAGGGTGACATTGGAAAACCAGGTCCGAAAGGAGTGCCAGGGGGATCTGGGCCTAAAGGAGAGCCAGGCATTCCTGGTCGGGATGGAAAAGATGGGACTCCGGGAACAGACGGAGAGAAAGTATGTCATCTTTTATCACGGAATTTGTCCGGTGTCTGTAGAGGTGGGTGCTGATGTTATTAACGGGTTCTTCTCTGGTTTCAGGGGGATGCCGGGCGACCTGGAGTCCCAGGGGAGAAAGGTCCCAATGGCCTTCCTGGATTACAAGGAAAGGCTGGAACCAAAGGATCGAAAGGGCAGAGTGGTGACCAAGGAAAAAGTGGAGAGCCCGGCCCGTCTGGAGAGCCAGGTATTCCAGGAGGGGTTGGACCTCAAGGAGATATGGGACTTCAAGGGGTTAAAGGCTTCCAGGGACCAAAGGGCGCTCTGGGAGATGCAGGGCTTCCTGGGCCGACAGGAATCCGCGGATTATTTGGTGAAAGGggtCCAGTCGGAGCTTCAGGCTCCAAAGGAGACCCAGGTCTCGCTGGAAGTGATGGCCTTCCTGGAGAAACAGGAGAGCCGGTATGGTCCATTTGGTCCTGTTGGACAAAAAGGAGAGcctGGCAAACGTGGTGAGCTTGGTCTGAAAGGATTCACCGGCCCTCAGGGGGAGACCGGGGCCAGAGGGGCTCCTGGGAAACCAGGCTTCATGGGCTTCCAGGGAGAGCAGGGCCTGCCGGGTATCGCAGGAAAAAATGGCGTTCCTGGTAAACTAGCAAGTGAACAGCACATCCGGGAGTTGTGTGCTGGAATGATCGATGGAGGCCCTTGGCCCCTGGCATGGTGGGTCGTCCCGGTCCTGCTGGGCCCCCAGGGCAGCCAGGAGAGGCCGGGTCAATGGGACACCCAGGAACACGCGGACCACCCGGATACAGAGGACTTCCCGGAGAACTGGGAGACCCCGGCCTCAGAGGCGACGTTGGTGAGGCAGGTGACAAAGGGCCGGTTGGCAAAGCTGTTGACGGACCTACAGGAGACCAAGGGCATCAAGGGCTTCCCGGGGTGTCTGGAGTCAGCAAAGACGGTCGCGATGGTGCCCCGGGTGATGCAGGCTATCCTGGCGAGGCTGGCAGGGTGGGTAGGACTGGCTCTCAGGGGTCCCCTGGAATCTGTGACACGTCGGCCTGCCAGGGAGCTGTGGCGGCAGGAAAATCAACCAATCCCAAGAAGCATTAAACCAGGAGGAGACTCAGATATTTTTTTGGAAGGACGTGACTGAATAtttaaggaaaagaaaagacaatgggaaggaaggaagagaaACTACGAAGAAATCAGACTTTACCAAGACGAACGGACAGAGGTCACAGACATACACGATCGAGCGCACGAACACCGGTATCGCTCCTGACAAcgaaattttaaataaaacagtctCCCATGAATGGCTTTACTGAAAAGGTGcttaaagacatttttttttaatgtatgttttttttttccctccccatGACATCCAGCTACACACCCCTCCTGCAAAACAGAGGCCCTTCTACCTACAGTAACTTTCTGAATGTCTTGGCAGTAGTTTTAGAGCACGAATGCAGCTCTACGCATTTGTGGTCCATGGTGTCTTCTCTTCAGGCAAGCTTACCTCACTAAATGTTTCTCATAATACAATTTCAGTGCAAGAGCTGTAATTCTGTGAAGGggctttgtatatatatataaatatcacaaaATGTGTTCAGGTATTTTGTATAGTTCAGTATACCTGGAATTAGGTCCATTTTCAACACTTGCTAGTATAGACATTATTTGAAGCAGcttgtgaagtgtttttttcattttgtttttctaaaagtgttttatactttttaattatttgttaaacTCTAAGATCAAACTCCCCTTCAAACatgtaaagaaataataataaaataaaaaggctatGTGGATGCTACAGCAACTGTTACAATGACGCAGTCCTTAGTGAAATGTGTGCTTACTCCTCTCCGTTTTACTCCTCTTAAATGAAAATCCACATCCACTATGTAATGGTGCTGTAACTATTAAATACACATGATTTgaaatactatttattatttgtgggTGACTGTTGTATGTATAGTAAAGCGCTATAGCACCATATGTTGtaagaaataatgaataaagcCACTTTTCAGTAAATCGCTA

Function

symbol description
col9a3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including head mesenchyme; hypochord; mesoderm; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 3 and osteochondrodysplasia. Orthologous to human COL9A3 (collagen type IX alpha 3 chain).

NR:

description
PREDICTED: collagen alpha-3(IX) chain isoform X2

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008159 True 3073 mRNA 0.52 28 44044933 44071985

Neighbor

gene id symbol gene type direction distance location
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding downstream 72633 43962078 ~ 43972300 (-)
AMCG00008152 ncoa3,LOC107090280 coding downstream 122905 43897216 ~ 43922028 (-)
AMCG00008148 mrgbp,LOC106566471 coding downstream 368556 43666568 ~ 43676377 (-)
AMCG00008147 NA coding downstream 488900 43533559 ~ 43556033 (-)
AMCG00008135 edem2,LOC107697010 coding downstream 604867 43432676 ~ 43440066 (-)
AMCG00008158 NA coding upstream 1678 44073663 ~ 44082848 (-)
AMCG00008164 NA coding upstream 649754 44721739 ~ 44740915 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 677105 44749090 ~ 44752458 (-)
AMCG00008163 NA coding upstream 704668 44776653 ~ 44778533 (-)
AMCG00008166 NA coding upstream 706751 44778736 ~ 44786186 (-)
G28914 NA non-coding downstream 44067 43996118 ~ 44000866 (-)
G28907 NA non-coding downstream 148982 43894179 ~ 43895951 (-)
G28900 NA non-coding downstream 151125 43863607 ~ 43893808 (-)
G28532 NA non-coding downstream 1450073 42522805 ~ 42594860 (-)
G28512 NA non-coding downstream 1543937 42500677 ~ 42500996 (-)
G28973 NA non-coding upstream 415225 44487210 ~ 44487419 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding upstream 594358 44666343 ~ 44666577 (-)
G28977 cdh4,LOC101161393 non-coding upstream 607831 44679816 ~ 44680042 (-)
G28978 NA non-coding upstream 609440 44681425 ~ 44681769 (-)
G28976 NA non-coding upstream 610452 44682437 ~ 44688175 (-)
AMCG00008144 phf20,LOC107727854 other downstream 461520 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 924769 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1280279 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 1643859 42359900 ~ 42401074 (-)
AMCG00008095 NA other downstream 1955440 42083474 ~ 42089493 (-)
G28970 NA other upstream 345889 44417874 ~ 44418196 (-)
AMCG00008192 NA other upstream 1077516 45149501 ~ 45228504 (-)
G29301 NA other upstream 1978710 46050695 ~ 46054346 (-)
G29361 NA other upstream 2408961 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 3508154 47580139 ~ 47607012 (-)

Expression


Co-expression Network