AMCG00008160


Basic Information

Item Value
gene id AMCG00008160
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44259975 ~ 44268323 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008160
ATGGATATGGAAGGGAATGACTTGCTGGCAGAATTGACAGACCATCTGCAGTTCATCGACCTGCTGAAGAGGATGCTGAAGATGGATCCAGATGACAGGATTACCCCCATCCAAGTCCAGAACCATCCATTTGTCACCTTGACACATCTATGTGAGTTCCTCCCCAGCACATATGTCATGTCTTGTGCCCAGGACATGGAGGTCTGCTATAGTCGAGTCAATACCAACACAGCCCCCAGAACGACCTCCAACAGTCAGCTCAACACTGCCCCCAACACGACATCCAACAGCCAGCTAAACACAGCCCCCGACACAACATCCAACACCCAGCTCAACGCAGCCCCCAACACGACGACCAACAGCCAGCTCAACACTGCCCCCAACACAACATCCAACAGCCAGCTAAACACAGCCCCCGACATGACATCCAACAGCCAGCTCAACGCAGCCCCCAACACGACGACCAACAGCCAGCTCAACGCTGCACCAAACCAGGCACAGCAACTCATGGCTGCAGAGGGGAACAAAGGGCACCGCAGACAGATCATTTTGCTGATGCTCCAGGCGAAATCGGCAGCAAAGGGCCTGAATTCTGCAACTCAGCAGCGGTTTAAGTGGGTGAGCAGACCAAGACAGCTTATGAGGATGGTGCTTGCTGACATGAGCCGGCCCTTTGACAGAATAAACCATCAGCTTCTTCTTAATATCCTGATCTCCTACGGGATTTACACAACTGCTCTCTATGTTGCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008160 True 753 mRNA 0.53 2 44259975 44268323

Neighbor

gene id symbol gene type direction distance location
AMCG00008157 NA coding upstream 128256 44106455 ~ 44131719 (+)
AMCG00008153 NA coding upstream 215165 44040778 ~ 44044810 (+)
AMCG00008156 NA coding upstream 223848 44034386 ~ 44036127 (+)
AMCG00008155 NA coding upstream 225635 44001734 ~ 44034340 (+)
AMCG00008154 NA coding upstream 260142 43976301 ~ 43999833 (+)
AMCG00008167 NA coding downstream 309049 44577372 ~ 44653905 (+)
AMCG00008162 cdh4,LOC106571924 coding downstream 397313 44665636 ~ 44683700 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding downstream 475307 44743630 ~ 44748571 (+)
AMCG00008169 ss18l1 coding downstream 484722 44753045 ~ 44760831 (+)
AMCG00008168 NA coding downstream 497822 44766145 ~ 44770112 (+)
G28931 col9a3,LOC106571930 non-coding upstream 203367 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 364024 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1058772 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1139194 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 1637818 42621950 ~ 42622157 (+)
G28956 NA non-coding downstream 423218 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 500354 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 527601 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 1085393 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 1109688 45378011 ~ 45378353 (+)
AMCG00008132 NA other upstream 954445 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1103903 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1151733 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 1822747 42413632 ~ 42437228 (+)
G28395 NA other upstream 2266598 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 754825 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 879074 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 1072251 45340574 ~ 45343914 (+)
G29183 NA other downstream 1172190 45440513 ~ 45441064 (+)
G29353 NA other downstream 1999568 46267891 ~ 46268327 (+)

Expression


Co-expression Network