AMCG00008161 (lsm14a,lsm14b,LOC105018105)


Basic Information

Item Value
gene id AMCG00008161
gene name lsm14a,lsm14b,LOC105018105
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44743630 ~ 44748571 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008161
GCTTGCTGGGGTCTGTGTGAGTTTGGTGAGAGTGAAAGGTTGCACTAGGAGTCACGATTTTGTCATTTTCCACATCGTAAGCAAAGAAGGATCGAGAGTTTCGATTAAGAAACCAGTTAACCCAACCCAATCCAAGCCGGCCATGAGCTCCGGGACGCCATACATCGGTAGTAAGATCAGCCTGATATCCAAGGCCCAGATCCGGTATGAGGGCATTTTGTACACCATCGACACGGAGAACTCGACGGTGGCCTTGGCCAAAGTGCGGTCGTTTGGAACCGAAGGCCGGCCCACTGAAAGACCAGTGCCCCCCAGAGACGAGATCTACGAGTACATCATCTTCAGGGGAAGTGACATTAAAGACATAACGGTGTGCGAGCCGCCGAAACCGCACCTTGGTTTACCCCAGGATCCGGCTATTGTGCAGTCATCTCTTGGTGGTTCTTCAGCCTCTTACCAGCCCCAGGCTTCCTACAGCCCTTACAGAAGCATGATGTCCTCCTACAGCCAGTTGGCAGCCAGCTCTCTGCTCAATCAGCAGTATGCTGCAGCGCTGGGGGCAGGTCTTCATAGCCTGCAAGTGAGAAGGGCCCCTATGGTAGAGCAGGCTGTACAAACTGTCCCAACTGACAACTCTGCACAGAAAAagcccccaccaccaccaccagcagcacCGCTGCCCGGGGGGGAACCTACCAGGGCCTCCCAGCTACCGCCTCAACGTGCTGTAGCCCAGGATCTGGTGCCAGGCAATGATGTGAATAGAAGACCCCAGAGACGGAGACAAGCAAACCGGAGGTCCAGAAACCGTGGGAAAGGACAGATTCTGGTGGGAAGCTCAAAGCCCACTACCCTCCAGTTTGATGCAGACTTTGATTTTGAAAGTGCAAATGCTCAGTTCAACAAGGATGATCTTGAAAGGGAGATCCAAAACAAGCTGAACATTAAAGATGCAAAGACTGACCAAGAGGAGAAAGGGGACTCGGGGGTTGACACTCAAAATAGTGAGGGGACTGTGGAAGAGGATCCCTTGGGGCCAAACTGCTACTATGACAAAACCAAATGCTTCTTTGACAACATTTCCTCTGAGCTGAAGTCCAGACGAACTACGTGGGCAGAGGAGAGGAAGCTCAATGTGGAGACTTTTGGGGTTCCTGGCAGGTTCCTGAGGGGACGTGGGTTCAGAGGGGGATTCAGAGGGCGTAGAGGGCGAGGGGCAGCTCAGCGTTTACCCAGCATGCAAAAAGTGGGCAGTGGGAGGCTATAAAGAGTCCTTGGATGCCAGTGATTTGAGTTTACAGATGTGGTTGCTGGTGCAAATTCTCCCAACTACCATCCAAGACcaattgttttttgaaatgtttgcttTCCAGTGATTTGGATTAGTTTCTACTGGTTACACTATAGACTGCCATATTGAAGAGCCCCAATAGTCCTTATtcatcttagtttttttttttttttcccctctttatAATTGACTAGGAAGTGAATCTCAAGCGTTCTTGCTTTAACTTGCAAGTTTTTCCAAAATTACGACTCTTGAGCTTTTATTTCCAATAGAATTTTTtagaagcacttttttttttttaaacttgtattacTCAACATTTTTGCCTTGGACAGTGAAAGGATACAAACTACATTCTTTATCTTCATTCTATGATTAAATCTTGCCATTCGCTTCCTAaacaattttcaaaatattctCTTAAATGTCTGTAACTGCATAAAAAAGGCAATACTTGATCATCCTAAATTTACTGAACCttatttaatgcattgttttcaattttgtaaatagaaatgtgtatataatgtgGAACTTGAGCAATGGAACTTGTTAAAGATGGTTAAGACAACCTGAATGCATGTTGCTTGAAAAAGTGGGTGTCTTCATTCAGGACAGTTTGTATTAGTTTGGATTATACATTGGGAGATttcttttgtgcattttttttttttttttttttaaacattctgGAAATTGAACCTGAACCACTTTGTAACAGTCAGGAaatctttaatgtttttgatcCATTGCcaataaaactattttgttgCGTTAACTGAACATCTCGGTGTGTGGCGATTTTCAGAATGTATGATTCCCTTCAATGCTGTGCTGAAGGTCTTGCACAATTAAGGTCTGAATGTAAAGGATTCCAGTTTGTCTGTCAAGGTAATGTAAAATAACTGCACATCCATCTAAACTGTCAAGCTTTCCATTTACcttttaaccatttaaaaaaaaa

Function

symbol description
lsm14b Predicted to enable mRNA binding activity. Located in cytoplasm. Is expressed in kidney; liver; oocyte stage I; oocyte stage II; and ovary. Orthologous to human LSM14B (LSM family member 14B).
lsm14a Enables RNA binding activity. Involved in P-body assembly; mitotic spindle assembly; and negative regulation of translation. Located in cytoplasmic ribonucleoprotein granule; cytosol; and mitotic spindle.

NR:

description
PREDICTED: protein LSM14 homolog A isoform X3

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008161 True 2255 mRNA 0.44 9 44743630 44748571

Neighbor

gene id symbol gene type direction distance location
AMCG00008162 cdh4,LOC106571924 coding upstream 59930 44665636 ~ 44683700 (+)
AMCG00008167 NA coding upstream 89725 44577372 ~ 44653905 (+)
AMCG00008160 NA coding upstream 475307 44259975 ~ 44268323 (+)
AMCG00008157 NA coding upstream 611911 44106455 ~ 44131719 (+)
AMCG00008153 NA coding upstream 698820 44040778 ~ 44044810 (+)
AMCG00008169 ss18l1 coding downstream 4474 44753045 ~ 44760831 (+)
AMCG00008168 NA coding downstream 17574 44766145 ~ 44770112 (+)
AMCG00008170 NA coding downstream 24497 44773068 ~ 44774474 (+)
AMCG00008171 NA coding downstream 197181 44945752 ~ 44949206 (+)
AMCG00008179 NA coding downstream 249658 44998229 ~ 45012622 (+)
G28931 col9a3,LOC106571930 non-coding upstream 687022 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 847679 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1542427 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1622849 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 2121473 42621950 ~ 42622157 (+)
G28991 NA non-coding downstream 20106 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 47353 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 605145 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 629440 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 791198 45539769 ~ 45542206 (+)
AMCG00008132 NA other upstream 1438100 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1587558 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1635388 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2306402 42413632 ~ 42437228 (+)
G28395 NA other upstream 2750253 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 274577 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 398826 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 592003 45340574 ~ 45343914 (+)
G29183 NA other downstream 691942 45440513 ~ 45441064 (+)
G29353 NA other downstream 1519320 46267891 ~ 46268327 (+)

Expression


Co-expression Network