AMCG00008162 (cdh4,LOC106571924)


Basic Information

Item Value
gene id AMCG00008162
gene name cdh4,LOC106571924
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44665636 ~ 44683700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008162
ATGTTAGGAATACTTAAAGCATGTCATATCCCCTTACAAAGTGTCTGTGAAGGATTATGGCCGGTGGACTACGAGATGAACCGCGCCTTCATGTTAACCGTGATCGTGTCCAATCAGGCTCCTCTTGCCAACGGTATTCAGTCCTCCTTCCAGTCCACAGCAGGGGTCACCATCTCGGTCATGGACGTGAACGAGGCGCCTTTCTTCCCCGCCAACCCCAAACTCATTCGCTTTGAGGAGGGCGTCCCCGCTGGCACCACCCTTTCCACGTTCGCCGCCAACGACCCCGACCGCTTCATGCAGCAGATCATCAGGTACTCCAAGCTGTCAGACCCAGCAAATTGGCTGAACATTAATGCCACTAACGGTCAAATCATCACCACAGCAGTCCTGGATCGGGAGTCGGTctatgttaaaaataacatttatgaaGCCACCTTCCTTGCAGCCGACAATGGTTCTCCCCCAGCCAGTGGGACGGGAACCCTGCAGATCTACCTGATTGACGTCAATGACAACGCGCCCGAGCTCCTGCCCCAGGAAGCCCAGATCTGCGAGAAGATCAACACCAACTCCATCAACATCACTGCCTCCGATTCTGATGTCGACCCCAACATCGGGCCCTTCGTCTTCGAGCTGCCATCCTTCCCCCCCAGCGTGAGGCGGAACTGGACCATCTCCCGGCTCAATGGTGATTACGCCCAACTGAGTCTACGCATCCAGTACCTGGAGTCGGGGGTGTACGACGTGCCAATCATTGTCACCGACTCGGGCAACCCCCCGCTGTCCAACAGGTCCCTCATCAAGGTCAAGGTGTGCCCCTGTGATGAGAAAGGAGACTGCACCACCATCGGAGCCGTAGCCGCTGCTGGGCTGGGCACCGGAGCCATCATTGCCATCCTCATCTGTATCATCATCCTGCTCACTATGGTGCTGTTGTTTGTTGTCTGGATGAAGAGACGGGAGAAGGAGAGGCAGACCAAGCAGTTGCTGATCGATCCGGAGGATGACGTTCGGGACAACATCCTAAAATATGACGAAGAGGGTGGTGGGGAGGAAGACCAGGACTATGACCTGAGCCAACTGCAGCAGCCCGAGTCTCTGGATCACATCATCAGCAGTAAACCCACTGGCATCAGACGCGTGGACGAGAGGCCTGTAGTGGCGGAGTCCCAGTATCCAATCCGACCGGTCGTTCCTCATCCAGGTGACATTGGGGATTTCATCAATGAGGGCCTGCGAGCTGCGGACAACGACCCCACCGCCCCGCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCAGCGGCTCCACCGCTGGCTCAGTCAGCTCCCTCAACTCCTCCAGCACCGGCGACCAGGACTACGACTATCTCAACGACTGGGGGCCTCGCTTCAAGAAACTGGCCGACATGTACGGGGGCGGCGATGACGACTAACCCAGCCACAAGGCATACCCACAATGCATCACCACTTCAGAAATAGAATGGAACAACGATGACACCACGCAGAGTGAGGACTGTACAAAGAGGctgctttttaatgaaaaccccCTGCTGACtgtcaagaaaagaaaaaatacttttatttttagtgtcaagttttcagttgttttccaatgactttttttatgattattattatttccactCTTTTAGAACATAAGCTGTCTAAatagcatgaaaacaaaaagagaaatgctTCTAGTCTTTGCACCATTATTATGTTCCAGTGCAGCCAGCAGgggtgtgatttattttgcttgAAAAACCTTTGCTTTATCACTAAAGAGAGTGAAAGGCACTCTTTCTTAACTTGAATTCCTTAGAACAGAAGCACTGTTGTTAAAAAGTGCCTTTTTGGTGCGTTTTATCGGATTCCCACTATCTCAGGATTGGTTGCCATTCGAATGGATCGGGCGGCACgttccctctttccctctctcgctctctctctcgctctctctctgtcggtGACTCTAAAACTCTTTTTGGTCGGCAAcaagggaaaaagaaaacaaaagtaaaaatcagtgttaaaattatctgttttaattttgagGAACAAAAAGCTTATAGTTATGTTAGTGGAGCTCAGTGGTGTTTTCATTGTGAAATTATCCAAACTCAGATGCACAATCATAGACCGGGGAAGTCACCATATGGTTCAAGCTGCACTATAGCAAGTCAAATTGCCCCCAGTGTAGACGCCAATGAAAACATGCTCCTCCTCTTCACAGCACCTGTATAACTGCATAATCCTGTTACTTGCTTTattcttttgaaatgaaaaaaaaaaaaacacaagcatttgAGTTTGGATGACTGTTTAGCCGTATGGATTTTGAAAATGGGTTCCTATTTCTGTTGCTTTGTACAACTTAATCTCTAAACAGGCATGGAGGAtgtgggagggggagggcaggCGATGCTGCATTCATATTACTATCTTGGGTTTCCTGATAAACTGAGGAgtaacgagaaaaaaaaaaaaaaaaa

Function

symbol description
cdh4 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within cranial nerve development; regulation of eye photoreceptor cell development; and sensory system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Is expressed in nervous system. Orthologous to human CDH4 (cadherin 4).

NR:

description
PREDICTED: cadherin-4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008162 True 2499 mRNA 0.49 8 44665636 44683700

Neighbor

gene id symbol gene type direction distance location
AMCG00008167 NA coding upstream 11731 44577372 ~ 44653905 (+)
AMCG00008160 NA coding upstream 397313 44259975 ~ 44268323 (+)
AMCG00008157 NA coding upstream 533917 44106455 ~ 44131719 (+)
AMCG00008153 NA coding upstream 620826 44040778 ~ 44044810 (+)
AMCG00008156 NA coding upstream 629509 44034386 ~ 44036127 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding downstream 59930 44743630 ~ 44748571 (+)
AMCG00008169 ss18l1 coding downstream 69345 44753045 ~ 44760831 (+)
AMCG00008168 NA coding downstream 82445 44766145 ~ 44770112 (+)
AMCG00008170 NA coding downstream 89368 44773068 ~ 44774474 (+)
AMCG00008171 NA coding downstream 262052 44945752 ~ 44949206 (+)
G28931 col9a3,LOC106571930 non-coding upstream 609028 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 769685 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1464433 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1544855 43109050 ~ 43120781 (+)
G28548 NA non-coding upstream 2043479 42621950 ~ 42622157 (+)
G28956 NA non-coding downstream 7841 44691541 ~ 44749908 (+)
G28991 NA non-coding downstream 84977 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 112224 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 670016 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 694311 45378011 ~ 45378353 (+)
AMCG00008132 NA other upstream 1360106 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1509564 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1557394 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2228408 42413632 ~ 42437228 (+)
G28395 NA other upstream 2672259 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 339448 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 463697 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 656874 45340574 ~ 45343914 (+)
G29183 NA other downstream 756813 45440513 ~ 45441064 (+)
G29353 NA other downstream 1584191 46267891 ~ 46268327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003404 cdh4 coding NC_007122.7 CM002895.2 20371179 ~ 20826753 (+)