AMCG00008164


Basic Information

Item Value
gene id AMCG00008164
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44721739 ~ 44740915 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008164
ATGGCGGCGGGCTCCGATCTGCTGGATGATGTTTTCTTCAACACAGAGGTGGACGAGAAAGTAGTTAGCGATCTGGTGGGGTCCCTGGAGTCCGAGCTTGCGGGTTCGGGTCACGGGAACTCCGAGGCAAGGGGCCAGGCAGTGGGCAACCACATTGCCAGCGCTGGAGTGACAGGCAATGCCAATGTCCAGGAGAGCAAAATGGGACTTGCACAAGAGCTGGCAAAAGCAGGGGCTGGAGTGCAAGGGGGTGTTATTAATAATACGAGGTCCCAGGGTTCAGCTATGGATGCAACAACAGGGATCACATCGTCGGCTGGGTCGGAGGCAGCGGCGGGGCTCAGCCAAGGCAAGACGGGGGCTGTCAGCGCCATGGCGAGCGCTGTGCCCGGCCACGGAGCGGACAGCGGGAAAACCGGGACGTCGGCTGTGCAAACTTTGAATGGGAGTAACGTAGTAATGAACTCTCACAATTCAGGAAGTGCTGCCGCTTTCCCCGGGACGCCAGCAGCAAGTACTACTACGAGCAGCAGCACCGCACCTGCTGTCACGGTGGTCAACAACGGACCCGGGTCGGTGGTCAAAGGAAATGTAAGCGCTGTTTTGCCTTCAGCCTCCAACACTGTCATACAGACCTCTTTCCCGAGCAGCCAGAATGTGCTCACCTCGACAGTCATTTCGTCTCAGGCGACAAGTTCGGGAAGTGGACCTACCGTCACACTCGTGAGGCCGCCTATGCACACAGCCGGACCGGCGACGACGCAAAACGGGAATAATAACTCGACTGTCAGTGTGGCGACCCTGGCTGTCCCGGCGGGCTCGGCGGCACCTGTGCAGGCTCCGCTTCTGAACAGCAGCCAGGCGGCGCCGGTCTCCGTGTCTGCCAGCGCCGGAGCGCAGGTCATCAAGTCCGAGTCGCCCAAAGCGGCCCCGCAGCCCACGCCGCCGGCAGCGGCAGGTGTGGTGGCAAACGCGGGTACCGTGTCTCTTGGCCAGCCTATGCAAACCGCTCTGCAGACCGCCCCTCCGCAGCAGCCCACCCCGGCCACCGCTATGGGAAAGAGCCCGGTGTTGCAGAGCATAACGCGGACTTCCACTCCAGCAGCAATCGCTGCCAGTCCCGGCGGAATACGAGCTATCGCCCCGCAGGTGTTGGCCCCTCGCCTCCCGCAGGCTCCGCAGAATCAGCCTAACATCCAGAACATCCAGCTTCCTCCAGGTATGGTTCTGGTCCGCAGCGACAGTGGCCAGTTGTTGATGATCCACCAGCAGACTCTGGCCCAGATGCAGGCTCAGTCCCAGTCCCAGAGTGCCATGGCTCCCCGCCCTGCCACGCCCACCAGCACTCCCCCAGTCCAGATCACCTCAGTGCAGGCCCCTGGCACACCAATTATCGCACGGCAGGTCACGCCAACGACGATAATTAAACAGGCCTCCCCTGCCCAGACGACAGTGCAGGCCACCACCACACTACAGAGGCCTCCCGTCCTGCAGAATCAAATAGTGCTCGGTGGGGCAGCCACGGCCACTCCGATAGGAACTCCATCCCCAGTGCAGCCAGGAGCCGCCCAGAGGACAGTAACAGGGGCCACTGGGGCCTCGTCTAACACTGCCACGGAAACCTTGGAAAATGTGAAGAAATGCAAGAACTTTCTCTCCACCTTGATTAAGCTGGCCTCGAGTGGGAAGCAGTCTTCAGAGACAGCAGCAAATGTGAAAGAGCTGGTACAAAACCTTCTGgaaggaaaaatCGAAGCAGAAGATTTCACAAGCAGATTATACCGGGAGCTCAATTCCTCACCTCAGCCATATCTCGTGCCTTTCCTCAAGCCCGTGGTCCTCACCTCATTGCCctctgttttcctgttttcctcCCTGCAGAGGAGTCTCCCGGCCCTGCGGCAGCTCACCCCCGACTCCACGGCGTTCATCCAGCAGAGCCAACTCCAGCAGCCCAGCACCCAGGCCACCACCACCCTGACCGCCATGGTGCTGGGCAGCACGGTGCAGCGGACTGCGGGCAAGACCACCGCCACTGTCACCAGCACCCTCCACCAGCCCGTCATCAGCCTGGCCCAGCCCGGCCACACCAAACCAGGGCAGGCCACTCCGCTGGTCCTGCAGTCACAGCAGCAGGGTGCCATGGTGCGGCCGCCCCAGGTCACGCTGACGCAGACGCCAATGGTGACACTCAGGCAGCCTCACAACCGGATCATGTTGAGTCAACAGCCGGTGCAGGTGAAGCAACTTCAGACAGTCCCTGTCGTGAAGCAGACGGTATTACCTGGTACAAAAGTGTCCCCGGCCTGTCCGACGCTGGCATTGGCGGCTCAGAAGAACAAACTGAAGGATGCAGGGGGGGGGTCCTTCCGGGACGATGACGACATTAACGATGTGGCTTCCATGGCGGGGGTCAACCTGTCGGAGGAGAGTGCGAGGATACTGGCCACCAACTCCGAGCTCGTGGGCACGCTGACCAGGTCCTGCAAAGACGAGGCTTTTCTCTTCACATCGTCACTACACAGACGGATTTTAGACATCGGGAAAAAGTATGGAATCACAGACCTTGGTCCAGAGGTTGTCAACTTTGTCTCGCATGCAACACAGCAGAGGCTACAGAATGTTCTGGAGAAAGTGACAGAGATCGCACAGCAGAGGAACATTTCATTCAAGGAGGACGACCGGTACGAGCAGGCCAGCGACGTGCGCTCCCAGCTCAAGTTCTTTGAGCAACTCGATCAGATTGAGAAGCAGAGGAaagaagagcaggagagagagattttgatGAAGGCAGCAAAGTCTCGATCAAGACAAGAAGACCCAGAACAGCTCCGGTTGAAACAGAAGGCCAAAGagATGCAGCAACAGGAGCTGGCCCAGATGAGACAGCGGGACGCCAACCTCACAGCGCTGGCTGCCATCGGGCCCAGAAAGAAACGAAAACTCGACTCACCAGGATCTGGGGCAGGAGCTGAGGGCTCTGGCTCCAGCGCCGCGCTCCCCGGCAGCTCCAGCGTCAGTGCGTCTCGGCAGTTCACTCGGCAGCGCATCACGCGTGTCAACCTCAGGGACCTCCTCTTCTGTCTGGAGAACGAGCGAAAAACCAGCCACTCGCACCTCCTCTACCGCGCCTTCCTCAAATAGCACTGGCTACGGGCACAGACTGTTGACTTTCTGTTGGCAGGACATGTTCACAGGacttcttttcccttttttccctactttaatgaatatatatatatatatatatttatctatatgtatgtatgtatatatacattttacagagagCGCCTTTTTTGTAACATGCAAATgga

Function

GO: NA

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008164 True 3317 mRNA 0.58 16 44721739 44740915

Neighbor

gene id symbol gene type direction distance location
AMCG00008158 NA coding downstream 638891 44073663 ~ 44082848 (-)
AMCG00008159 col9a3 coding downstream 649754 44044933 ~ 44071985 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding downstream 749439 43962078 ~ 43972300 (-)
AMCG00008152 ncoa3,LOC107090280 coding downstream 799711 43897216 ~ 43922028 (-)
AMCG00008148 mrgbp,LOC106566471 coding downstream 1045362 43666568 ~ 43676377 (-)
AMCG00008165 psma7,LOC106571922 coding upstream 8175 44749090 ~ 44752458 (-)
AMCG00008163 NA coding upstream 35738 44776653 ~ 44778533 (-)
AMCG00008166 NA coding upstream 37821 44778736 ~ 44786186 (-)
AMCG00008174 NA coding upstream 55011 44795926 ~ 44814080 (-)
AMCG00008173 NA coding upstream 111374 44852289 ~ 44872215 (-)
G28976 NA non-coding downstream 33564 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 39970 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 41697 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 55162 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 234320 44487210 ~ 44487419 (-)
G29081 NA non-coding upstream 293530 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 612892 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 678675 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 720864 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 749092 45490007 ~ 45490890 (-)
G28970 NA other downstream 303543 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1138326 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1601575 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1957085 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2320665 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 408586 45149501 ~ 45228504 (-)
G29301 NA other upstream 1309780 46050695 ~ 46054346 (-)
G29361 NA other upstream 1740031 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2839224 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2925727 47666642 ~ 47918462 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_03201861_03220295 TAF4A, TAF4 coding CI01000058 null 3200982 ~ 3220724 (+)